BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=60 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr3S 37.4 0.10 lcl|Jr2S 37.4 0.10 lcl|Jr1S 37.4 0.10 lcl|Jr7D 35.6 0.35 lcl|Jr5D 35.6 0.35 lcl|Jr4D 35.6 0.35 lcl|Jr2D 35.6 0.35 lcl|Jr1D 35.6 0.35 lcl|Jr8D 33.7 1.2 lcl|Jr7S 33.7 1.2 lcl|Jr5S 33.7 1.2 lcl|Jr4S 33.7 1.2 lcl|Jr3D 33.7 1.2 lcl|JrScfU0001 31.9 4.3 lcl|Jr8S 31.9 4.3 lcl|Jr6S 31.9 4.3 lcl|Jr6D 31.9 4.3 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 37.4 bits (40), Expect = 0.10 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTAGGTCTT 39 ||||||||| ||||||||||||| Sbjct 25281029 TTTAGTAATTATTATTAGGTCTT 25281051 Score = 35.6 bits (38), Expect = 0.35 Identities = 27/32 (84%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 2 TATCATATAAAATTCTTTAGTAATAATTATTA 33 ||| |||||||| | || || ||||||||||| Sbjct 6340113 TATAATATAAAAGTATTGAGAAATAATTATTA 6340082 Score = 35.6 bits (38), Expect = 0.35 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 6 ATATAAAATTCTTTAGTAATAATTATT 32 ||||| ||||| | ||||||||||||| Sbjct 24423893 ATATATAATTCCTCAGTAATAATTATT 24423919 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 3 ATCATATAAAATTCTTTAGTAATAATTA 30 |||| | | |||||||||||||| |||| Sbjct 24757696 ATCAGACACAATTCTTTAGTAATCATTA 24757723 Score = 31.9 bits (34), Expect = 4.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTAGGT 36 |||| ||||||||||||||| Sbjct 2230543 TTTAATAATAATTATTAGGT 2230562 Score = 31.9 bits (34), Expect = 4.3 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 23 AATAATTATTAGGTCTTAAGAAATA 47 |||||||||||| | |||| ||||| Sbjct 6046022 AATAATTATTAGATTTTAAAAAATA 6045998 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 23088468 TTTAGTAATAATTATTA 23088452 Score = 31.9 bits (34), Expect = 4.3 Identities = 27/33 (82%), Gaps = 4/33 (12%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATTAGGTCT 38 |||||||||| || ||||||||||| |||| Sbjct 23755929 ATATAAAATT----AGAAATAATTATTAAGTCT 23755901 Score = 31.9 bits (34), Expect = 4.3 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 23 AATAATTATTAGGTCTTAAGAAATA 47 |||||||||||| | |||| ||||| Sbjct 26151694 AATAATTATTAGATTTTAAAAAATA 26151670 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 37.4 bits (40), Expect = 0.10 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 5 CATATAAAATTCTTTAGTAATAATT 29 ||| ||||||| ||||||||||||| Sbjct 16595907 CATTTAAAATTATTTAGTAATAATT 16595931 Score = 35.6 bits (38), Expect = 0.35 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAA 24 ||||||||||||||||||| Sbjct 2808691 ATATAAAATTCTTTAGTAA 2808673 Score = 35.6 bits (38), Expect = 0.35 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 23 AATAATTATTAGGTCTTAAGAAAT 46 |||||||||||| | ||||||||| Sbjct 13168366 AATAATTATTAGATTTTAAGAAAT 13168343 Score = 33.7 bits (36), Expect = 1.2 Identities = 30/36 (83%), Gaps = 4/36 (11%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATTAGGTCTTAA 41 ||||| |||| ||| |||||||||||| |||||| Sbjct 9525494 ATATATAATT--TTATTAATAATTATTA--TCTTAA 9525463 Score = 31.9 bits (34), Expect = 4.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 19 TAGTAATAATTATTAGGTCT 38 |||||||| ||||||||||| Sbjct 4027340 TAGTAATATTTATTAGGTCT 4027359 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 16 CTTTAGTAATAATTATT 32 ||||||||||||||||| Sbjct 11111203 CTTTAGTAATAATTATT 11111219 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/26 (88%), Gaps = 2/26 (8%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAATAATTATTA 33 |||||| ||| |||||||||||||| Sbjct 25934560 ATAAAAATCT--AGTAATAATTATTA 25934583 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 6 ATATAAAATTCTTTAGTAATAATTATT 32 ||| | |||| ||| |||||||||||| Sbjct 34762361 ATAAACAATTTTTTTGTAATAATTATT 34762387 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 0.10 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATTA 33 |||||| ||| |||| |||||||||||| Sbjct 17494670 ATATAATATTATTTAATAATAATTATTA 17494643 Score = 35.6 bits (38), Expect = 0.35 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 23 AATAATTATTAGGTCTTAAGAAAT 46 |||||||||||| | ||||||||| Sbjct 1266927 AATAATTATTAGATTTTAAGAAAT 1266950 Score = 31.9 bits (34), Expect = 4.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAAT 25 ||||||| |||||||||||| Sbjct 4291887 ATATAAATTTCTTTAGTAAT 4291868 Score = 31.9 bits (34), Expect = 4.3 Identities = 27/31 (87%), Gaps = 2/31 (6%) Strand=Plus/Minus Query 3 ATCATATAAAAT-TCTTTAGTAATAATTATT 32 |||||||||||| |||| | ||| ||||||| Sbjct 23202620 ATCATATAAAATATCTTAATTAA-AATTATT 23202591 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 1 GTATCATATAAAATTCT 17 ||||||||||||||||| Sbjct 27633809 GTATCATATAAAATTCT 27633793 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 35.6 bits (38), Expect = 0.35 Identities = 28/34 (82%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 7 TATAAAATTCTTTAGTAATAATTATTAGGTCTTA 40 ||||||||||| || || |||||| | | ||||| Sbjct 7898148 TATAAAATTCTATATTATTAATTAATGGTTCTTA 7898181 Score = 35.6 bits (38), Expect = 0.35 Identities = 27/31 (87%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 3 ATCATATA-AAATTCTTTAGTAATAATTATT 32 || ||||| |||||| |||||||||||| || Sbjct 17426991 ATAATATACAAATTCATTAGTAATAATTTTT 17427021 Score = 33.7 bits (36), Expect = 1.2 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 12 AATTCTTTAGTAATAATTATT 32 ||||||||||| ||||||||| Sbjct 23750208 AATTCTTTAGTTATAATTATT 23750188 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 35.6 bits (38), Expect = 0.35 Identities = 27/32 (84%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 2 TATCATATAAAATTCTTTAGTAATAATTATTA 33 ||| |||||| ||| ||| |||||||||||| Sbjct 2821932 TATAATATAATATTATTTTTTAATAATTATTA 2821963 Score = 35.6 bits (38), Expect = 0.35 Identities = 27/32 (84%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 3 ATCATATAAAATTCTTTAGTAATAATTATTAG 34 ||||||||||||| |||| | ||||| |||| Sbjct 30684843 ATCATATAAAATTGTTTATCATTAATTGTTAG 30684874 Score = 33.7 bits (36), Expect = 1.2 Identities = 26/30 (87%), Gaps = 2/30 (7%) Strand=Plus/Minus Query 7 TATAAAATTCTTTAGTAATA--ATTATTAG 34 ||||||||||| || ||||| |||||||| Sbjct 23912045 TATAAAATTCTGTACTAATAACATTATTAG 23912016 Score = 33.7 bits (36), Expect = 1.2 Identities = 27/32 (84%), Gaps = 3/32 (9%) Strand=Plus/Minus Query 3 ATCATATAAAATTCTTTAGTAATAATTATTAG 34 ||| |||||||| |||||||||||||||| Sbjct 24756359 ATCTTATAAAATC---TAGTAATAATTATTAG 24756331 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 4 TCATATAAAATTCTTTA 20 ||||||||||||||||| Sbjct 6601206 TCATATAAAATTCTTTA 6601190 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 35.6 bits (38), Expect = 0.35 Identities = 27/32 (84%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1 GTATCATATAAAATTCTTTAGTAATAATTATT 32 ||||||||| |||| ||||||||||| ||| Sbjct 8571152 GTATCATATTTAATTTGTTAGTAATAATAATT 8571183 Score = 35.6 bits (38), Expect = 0.35 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 1 GTATCATATAAAATTCTTTAGTAATAA 27 ||||||||||||||| |||| || ||| Sbjct 33876303 GTATCATATAAAATTATTTATTATTAA 33876277 Score = 31.9 bits (34), Expect = 4.3 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 2 TATCATATAAAATTCTTTAGTAATAATTATTA 33 ||||||||||||| ||| | | || ||| ||| Sbjct 1821867 TATCATATAAAATGCTTAAATTATCATTTTTA 1821898 Score = 31.9 bits (34), Expect = 4.3 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAATAATTATT 32 || ||||| |||||||||||| ||| Sbjct 8670896 ATTAAATTTTTTAGTAATAATAATT 8670920 Score = 31.9 bits (34), Expect = 4.3 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 3 ATCATATAA-AATTCTTTAGTAATAATTA 30 ||||| ||| |||| || ||||||||||| Sbjct 22868624 ATCATTTAATAATTATTAAGTAATAATTA 22868596 Score = 31.9 bits (34), Expect = 4.3 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 11 AAATTCTTTAGTAATAATTATTAGG 35 |||||||| | ||||||||||||| Sbjct 33851649 AAATTCTTAAAAAATAATTATTAGG 33851673 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 35.6 bits (38), Expect = 0.35 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 23 AATAATTATTAGGTCTTAAGAAAT 46 |||||||||||| | ||||||||| Sbjct 8490789 AATAATTATTAGATTTTAAGAAAT 8490812 Score = 33.7 bits (36), Expect = 1.2 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 14 TTCTTTAGTAATAATTATTAGGT 36 ||||| || |||||||||||||| Sbjct 23113239 TTCTTGAGAAATAATTATTAGGT 23113261 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/27 (89%), Gaps = 3/27 (11%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAATAATTATTAG 34 |||||||| |||||||||||||||| Sbjct 30093009 ATAAAATT---TAGTAATAATTATTAG 30093032 Score = 31.9 bits (34), Expect = 4.3 Identities = 28/35 (80%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 12 AATTCTTTAGTAATAATTATTAGGTCTTAAGAAAT 46 || ||||| | || ||||||||||| | | ||||| Sbjct 5191735 AAATCTTTTGAAAGAATTATTAGGTTTGAGGAAAT 5191769 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 20 AGTAATAATTATTAGGTCTTAAGAAAT 46 ||||| ||||||||||| | || |||| Sbjct 22026774 AGTAAAAATTATTAGGTTTAAACAAAT 22026748 Score = 31.9 bits (34), Expect = 4.3 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Plus Query 19 TAGTAATAATTATTAGGTCTTAAGAAATA 47 ||||||||||||||| | |||| ||||| Sbjct 28008741 TAGTAATAATTATTA-GAATTAAAAAATA 28008768 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 40293812 TTTAGTAATAATTATTA 40293828 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 2 TATCATATAAAATTCTTTAGTAATAAT 28 |||||||||||| |||| || | |||| Sbjct 40681126 TATCATATAAAAATCTTAAGCACTAAT 40681152 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 35.6 bits (38), Expect = 0.35 Identities = 31/39 (79%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 3 ATCATATAAAATTCTTTAGTAATAATTATTAGGTCTTAA 41 || || ||| ||| ||| |||||||||||| |||||| Sbjct 33542485 ATAATTTAATATTTATTATTAATAATTATTAATTCTTAA 33542447 Score = 33.7 bits (36), Expect = 1.2 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 18 TTAGTAATAATTATTAGGTCTTA 40 ||||||||||||||||| | ||| Sbjct 21943302 TTAGTAATAATTATTAGTTTTTA 21943280 Score = 31.9 bits (34), Expect = 4.3 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 23 AATAATTATTAGGTCTTAAGAAATA 47 |||||||||||| | |||| ||||| Sbjct 3190287 AATAATTATTAGATTTTAAAAAATA 3190311 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 16 CTTTAGTAATAATTATT 32 ||||||||||||||||| Sbjct 12749489 CTTTAGTAATAATTATT 12749473 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 13 ATTCTTTAGTAATAATT 29 ||||||||||||||||| Sbjct 14619123 ATTCTTTAGTAATAATT 14619139 Score = 31.9 bits (34), Expect = 4.3 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAATAATTATTAGGTCTT 39 || ||| ||| || |||||||||||| || || Sbjct 43465680 ATTAAACTCTATAATAATAATTATTAAGTATT 43465711 Score = 31.9 bits (34), Expect = 4.3 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 15 TCTTTAGTAATAATTATTAGGT 36 |||||| ||||||||||| ||| Sbjct 45613463 TCTTTACTAATAATTATTTGGT 45613484 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 14 TTCTTTAGTAATAATTATTAGGTCTTA 40 || |||| |||||||||||||| ||| Sbjct 49707720 TTTTTTAAAAATAATTATTAGGTTTTA 49707746 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 33.7 bits (36), Expect = 1.2 Identities = 27/33 (82%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1 GTATCATATAAAATTCTTTAGTAATAATTATTA 33 ||||||||| | |||||||||||| | |||| Sbjct 32304324 GTATCATATGTATTTCTTTAGTAATTAACATTA 32304356 Score = 31.9 bits (34), Expect = 4.3 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 3 ATCATATAAAATTCTTTAGTAATA-ATTA 30 ||||||||||||| |||| | ||| |||| Sbjct 7901260 ATCATATAAAATTATTTAATTATAGATTA 7901232 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 33.7 bits (36), Expect = 1.2 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 8 ATAAAATTCTTTAGTAAT 25 |||||||||||||||||| Sbjct 2460574 ATAAAATTCTTTAGTAAT 2460557 Score = 33.7 bits (36), Expect = 1.2 Identities = 32/39 (82%), Gaps = 4/39 (10%) Strand=Plus/Plus Query 6 ATATAAAATTCTTTAGTAATAATTATTAGGTC--TTAAG 42 ||| ||||||||||| ||| || |||||||| ||||| Sbjct 20910364 ATAAAAAATTCTTTAATAAAAA--ATTAGGTCATTTAAG 20910400 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 12 AATTCTTTAGTAATAAT 28 ||||||||||||||||| Sbjct 1470057 AATTCTTTAGTAATAAT 1470041 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 2301961 TTTAGTAATAATTATTA 2301977 Score = 31.9 bits (34), Expect = 4.3 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 12 AATTCTTTAGTAATAATTATTA 33 |||| |||| |||||||||||| Sbjct 2738759 AATTTTTTAATAATAATTATTA 2738780 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 33.7 bits (36), Expect = 1.2 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTAGGTC 37 ||| ||||||||||||||||| Sbjct 8998414 TTTTGTAATAATTATTAGGTC 8998434 Score = 31.9 bits (34), Expect = 4.3 Identities = 31/40 (78%), Gaps = 4/40 (10%) Strand=Plus/Plus Query 12 AATTCTTTAG----TAATAATTATTAGGTCTTAAGAAATA 47 ||||||| || || || |||||| |||||||||||| Sbjct 3650155 AATTCTTAAGAATTTATTACTTATTATTTCTTAAGAAATA 3650194 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/26 (88%), Gaps = 2/26 (8%) Strand=Plus/Minus Query 22 TAATAATTATTAGGTCTT--AAGAAA 45 |||||||||||| ||||| |||||| Sbjct 8600114 TAATAATTATTATGTCTTCAAAGAAA 8600089 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATTA 33 |||| | || ||||||||||||||||| Sbjct 11885120 ATATGATATAATTTAGTAATAATTATTA 11885093 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 18 TTAGTAATAATTATTAGGTCTTAAGAAA 45 |||||| || || ||||||||||| ||| Sbjct 28817793 TTAGTATTATTTTTTAGGTCTTAAAAAA 28817820 Score = 31.9 bits (34), Expect = 4.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 12 AATTCTTTAGTAATAATTAT 31 |||| ||||||||||||||| Sbjct 2318198 AATTATTTAGTAATAATTAT 2318217 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 14256055 TTTAGTAATAATTATTA 14256039 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 14259652 TTTAGTAATAATTATTA 14259668 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 33.7 bits (36), Expect = 1.2 Identities = 23/25 (92%), Gaps = 1/25 (4%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAATAATTATT 32 |||||||| |||| ||||||||||| Sbjct 674347 ATAAAATT-TTTATTAATAATTATT 674370 Score = 31.9 bits (34), Expect = 4.3 Identities = 24/27 (89%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 3 ATCATATAAAATTCTTTAGTAATAATT 29 |||| ||||| ||||||||||||||| Sbjct 1437288 ATCA-ATAAATCTCTTTAGTAATAATT 1437313 Score = 31.9 bits (34), Expect = 4.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 10 AAAATTCTTTAGTAATAATT 29 ||||||||||||||| |||| Sbjct 1487208 AAAATTCTTTAGTAAGAATT 1487227 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 1 GTATCATATAAAATTCTTTAGTAATAA 27 |||| |||||||||||||| ||| || Sbjct 10843585 GTATTCTATAAAATTCTTTACTAAGAA 10843559 Score = 31.9 bits (34), Expect = 4.3 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 14 TTCTTTAGTAATAATTATTAGG 35 || ||| ||||||||||||||| Sbjct 11181957 TTTTTTTGTAATAATTATTAGG 11181978 >Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 Length=1158772 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 327466 TTTAGTAATAATTATTA 327482 Score = 31.9 bits (34), Expect = 4.3 Identities = 23/26 (88%), Gaps = 3/26 (12%) Strand=Plus/Minus Query 8 ATAAAATTCTTTAGTAATAATTATTA 33 |||||||| ||||||||||||||| Sbjct 657509 ATAAAATT---TAGTAATAATTATTA 657487 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 31.9 bits (34), Expect = 4.3 Identities = 25/30 (83%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 16 CTTTAGTAATAATTATTAGGTCTTAAGAAA 45 |||||||||||||| || || |||| ||| Sbjct 662771 CTTTAGTAATAATTGTTTTGTTTTAAAAAA 662742 Score = 31.9 bits (34), Expect = 4.3 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 2 TATCATATAAAATTCTTTAGTA 23 |||||||||||||| || |||| Sbjct 18834315 TATCATATAAAATTATTGAGTA 18834294 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 31.9 bits (34), Expect = 4.3 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 9 TAAAATTCTT-TAGTAATAATTATTAGGT 36 ||||| ||| || ||||||||||||||| Sbjct 12291288 TAAAAACCTTATATTAATAATTATTAGGT 12291260 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 19 TAGTAATAATTATTAGG 35 ||||||||||||||||| Sbjct 15488246 TAGTAATAATTATTAGG 15488262 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 19054527 TTTAGTAATAATTATTA 19054511 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 31.9 bits (34), Expect = 4.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTAGGT 36 |||||||||||| ||||||| Sbjct 10693291 TTTAGTAATAATCATTAGGT 10693310 Score = 31.9 bits (34), Expect = 4.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 3 ATCATATAAAATTCTTT 19 ||||||||||||||||| Sbjct 18024183 ATCATATAAAATTCTTT 18024167 Score = 31.9 bits (34), Expect = 4.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 12 AATTCTTTAGTAATAATTAT 31 |||||||||||||||| ||| Sbjct 24665763 AATTCTTTAGTAATAAATAT 24665744 Score = 31.9 bits (34), Expect = 4.3 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 9 TAAAATTCTTTAGTAATAATTA 30 |||||||||||| |||| |||| Sbjct 33756297 TAAAATTCTTTAATAATTATTA 33756276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17644108614 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2