BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=60 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm7D 39.2 0.028 lcl|Jm8S 37.4 0.099 lcl|Jm5D 35.6 0.35 lcl|Jm2S 35.6 0.35 lcl|Jm1D 35.6 0.35 lcl|Jm8D 33.7 1.2 lcl|Jm7S 33.7 1.2 lcl|Jm6D 33.7 1.2 lcl|Jm5S 33.7 1.2 lcl|Jm4D 33.7 1.2 lcl|Jm3S 33.7 1.2 lcl|Jm2D 33.7 1.2 lcl|Jm1S 33.7 1.2 lcl|Jm6S 31.9 4.2 lcl|Jm4S 31.9 4.2 lcl|Jm3D 31.9 4.2 >Query1 on lcl|Jm7D| Query1 on lcl|Jm7D Length=26765518 Score = 39.2 bits (42), Expect = 0.028 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 7 TATAAAATTCTTTAGTAATAATTATT 32 ||||||||||||| ||||| |||||| Sbjct 7270054 TATAAAATTCTTTTGTAATTATTATT 7270029 Score = 35.6 bits (38), Expect = 0.35 Identities = 28/34 (82%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 7 TATAAAATTCTTTAGTAATAATTATTAGGTCTTA 40 ||||||||||| || | |||||| ||| ||||| Sbjct 7655092 TATAAAATTCTATATCATTAATTAATAGTTCTTA 7655125 Score = 31.9 bits (34), Expect = 4.2 Identities = 28/34 (82%), Gaps = 1/34 (3%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAATAATTATTAGGTCTTAA 41 ||| |||| ||| ||||||||||| ||||||| Sbjct 1962991 ATATAATTTTTTT-TAATAATTATTTTGTCTTAA 1963023 Score = 31.9 bits (34), Expect = 4.2 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 18 TTAGTAATAATTATTAGGTCTTAAGAAATACA 49 ||||| || |||||| | |||||||||||| Sbjct 7269542 TTAGTTTTATTTATTAAATATTAAGAAATACA 7269511 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 9 TAAAATTCTTTAGTAATAATTATTA 33 || |||| || |||||||||||||| Sbjct 7718643 TATAATTATTGAGTAATAATTATTA 7718619 Score = 31.9 bits (34), Expect = 4.2 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 7 TATAAAATTCTTTAGTAATAATTATTA 33 ||||||||||| | |||| ||||||| Sbjct 15038474 TATAAAATTCTATTATAATTATTATTA 15038448 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 37.4 bits (40), Expect = 0.099 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 7 TATAAAATTCTTTAGTAATAATTATTAGGTCTTAAGAAATACA 49 |||| || || | |||||| | | || ||||||||||||||| Sbjct 7661914 TATAGTATGCTATTGTAATACTCAGTACGTCTTAAGAAATACA 7661956 Score = 33.7 bits (36), Expect = 1.2 Identities = 27/33 (82%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 13 ATTCTTTAGTAATAATTATTAGGTCTTAAGAAA 45 ||| |||| |||||||||||| | |||| ||| Sbjct 17844277 ATTATTTAATAATAATTATTATTTTTTAATAAA 17844309 Score = 31.9 bits (34), Expect = 4.2 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Plus Query 2 TATCATATAAAATTCTT-TAGTAATAATT 29 |||||||||||||| || || | |||||| Sbjct 2822548 TATCATATAAAATTATTCTATTTATAATT 2822576 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 17329732 TTTAGTAATAATTATTA 17329748 Score = 31.9 bits (34), Expect = 4.2 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 12 AATTCTTTAGTAATAATTATTA 33 ||| | |||||||||||||||| Sbjct 17379744 AATGCCTTAGTAATAATTATTA 17379765 Score = 31.9 bits (34), Expect = 4.2 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 12 AATTCTTTAGTAATAATTATTA 33 ||| | |||||||||||||||| Sbjct 17379911 AATGCCTTAGTAATAATTATTA 17379932 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 35.6 bits (38), Expect = 0.35 Identities = 27/32 (84%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 3 ATCATATAAAATTCTTTAGTAATAATTATTAG 34 ||||||||||||| |||| | ||||| |||| Sbjct 32556437 ATCATATAAAATTGTTTATCATTAATTGTTAG 32556468 Score = 33.7 bits (36), Expect = 1.2 Identities = 32/40 (80%), Gaps = 2/40 (5%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATTAGGTCTTAAGAAA 45 ||||||| ||||| ||||||||||| ||||||| || Sbjct 8138525 ATATAAATAACTTTACTAATAATTATT--TTCTTAAGTAA 8138488 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 3 ATCATATAAAATTCTTT 19 ||||||||||||||||| Sbjct 3788266 ATCATATAAAATTCTTT 3788282 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 4 TCATATAAAATTCTTTA 20 ||||||||||||||||| Sbjct 6802603 TCATATAAAATTCTTTA 6802587 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 8968180 TTTAGTAATAATTATTA 8968164 Score = 31.9 bits (34), Expect = 4.2 Identities = 35/47 (74%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 7 TATAAAATTCTTTAGTAATAATTATTAGGTCTTAAGAAATACAGTAG 53 ||||||||||| ||| | || | |||| |||||| ||||| || Sbjct 11274937 TATAAAATTCTGTAGCTCTTATAAGTAGGGTATAAGAATTACAGGAG 11274891 Score = 31.9 bits (34), Expect = 4.2 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 18 TTAGTAATAATTATTAGGTCTT 39 |||| |||||||||||||| || Sbjct 30231518 TTAGCAATAATTATTAGGTATT 30231497 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 35.6 bits (38), Expect = 0.35 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 10 AAAATTCTTTAGTAATAATTAT 31 ||||| |||||||||||||||| Sbjct 31912200 AAAATACTTTAGTAATAATTAT 31912221 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/27 (89%), Gaps = 3/27 (11%) Strand=Plus/Minus Query 8 ATAAAATTCTTTAGTAATAATTATTAG 34 |||||||| |||||||||||||||| Sbjct 20412105 ATAAAATT---TAGTAATAATTATTAG 20412082 Score = 33.7 bits (36), Expect = 1.2 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 26 AATTATTAGGTCTTAAGAAATAC 48 |||||||| ||||||||||||| Sbjct 23434952 AATTATTACCTCTTAAGAAATAC 23434930 Score = 31.9 bits (34), Expect = 4.2 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 2 TATCATATAAAATTCTTTAGTAATAATTATTA 33 |||||||||||| | |||| || | | ||||| Sbjct 4386992 TATCATATAAAAATATTTAATATTTAATATTA 4387023 Score = 31.9 bits (34), Expect = 4.2 Identities = 24/27 (89%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATT 32 ||| |||||| ||||||||||||| || Sbjct 6149815 ATAAAAAATT-TTTAGTAATAATTTTT 6149790 Score = 31.9 bits (34), Expect = 4.2 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 28 TTATTAGGTCTTAAGAAATA 47 |||||||||||||| ||||| Sbjct 7739295 TTATTAGGTCTTAAAAAATA 7739276 Score = 31.9 bits (34), Expect = 4.2 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 9 TAAAATTCTTTAGTAATAAT 28 |||||||||||| ||||||| Sbjct 11972768 TAAAATTCTTTATTAATAAT 11972787 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 28813838 TTTAGTAATAATTATTA 28813822 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 35.6 bits (38), Expect = 0.35 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 14 TTCTTTAGTAATAATTATT 32 ||||||||||||||||||| Sbjct 39147525 TTCTTTAGTAATAATTATT 39147543 Score = 33.7 bits (36), Expect = 1.2 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1 GTATCATATAAAATTCTTTAGTAATA 26 || |||| |||| ||||||||||||| Sbjct 12364769 GTTTCATGTAAACTTCTTTAGTAATA 12364794 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 20096935 TTTAGTAATAATTATTA 20096919 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 21831748 TTTAGTAATAATTATTA 21831764 Score = 31.9 bits (34), Expect = 4.2 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAATAATTATTAGGTCTT 39 || ||| ||| || |||||||||||| || || Sbjct 41259089 ATTAAACTCTATAATAATAATTATTAAGTATT 41259120 >Query1 on lcl|Jm8D| Query1 on lcl|Jm8D Length=36225362 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATTA 33 || ||| || ||||||||||||||||| Sbjct 21773842 ATCTAATATAATTTAGTAATAATTATTA 21773815 Score = 31.9 bits (34), Expect = 4.2 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 7 TATAAAATTCTTTAGTAATAATTATTA 33 |||||||||||| |||| || || ||| Sbjct 20211640 TATAAAATTCTTAAGTATTATTTCTTA 20211666 Score = 31.9 bits (34), Expect = 4.2 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 9 TAAAATTCTTTAGTAATAATTA 30 || |||| |||||||||||||| Sbjct 31348404 TATAATTATTTAGTAATAATTA 31348383 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 31572352 TTTAGTAATAATTATTA 31572336 >Query1 on lcl|Jm7S| Query1 on lcl|Jm7S Length=21889424 Score = 33.7 bits (36), Expect = 1.2 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 13 ATTCTTTAGTAATAATTATTA 33 |||||||||||||||| |||| Sbjct 8580878 ATTCTTTAGTAATAATAATTA 8580898 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 12 AATTCTTTAGTAATAAT 28 ||||||||||||||||| Sbjct 1476560 AATTCTTTAGTAATAAT 1476544 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 33.7 bits (36), Expect = 1.2 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 2 TATCATATAAAATTCTTTAGTAATAA 27 ||| ||||| || ||||||||||||| Sbjct 10388101 TATTATATAGAAATCTTTAGTAATAA 10388076 Score = 33.7 bits (36), Expect = 1.2 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 9 TAAAATTCTTTAGTAATAATTATTAG 34 |||||| | |||||||||||||||| Sbjct 18323088 TAAAATCATCTAGTAATAATTATTAG 18323063 Score = 33.7 bits (36), Expect = 1.2 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 38 TTAAGAAATACAGTAGTT 55 |||||||||||||||||| Sbjct 31111531 TTAAGAAATACAGTAGTT 31111548 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/24 (92%), Gaps = 1/24 (4%) Strand=Plus/Minus Query 8 ATAAAATTCTTTAGTAATAATTAT 31 ||||||||||||||| ||||||| Sbjct 20814180 ATAAAATTCTTTAGT-TTAATTAT 20814158 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 3 ATCATATAAAATTCTTT 19 ||||||||||||||||| Sbjct 22396477 ATCATATAAAATTCTTT 22396461 >Query1 on lcl|Jm5S| Query1 on lcl|Jm5S Length=32113326 Score = 33.7 bits (36), Expect = 1.2 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 22 TAATAATTATTAGGTCTTAAGAAATA 47 || ||||||||| |||||||||||| Sbjct 3616539 TATTAATTATTATTTCTTAAGAAATA 3616564 Score = 33.7 bits (36), Expect = 1.2 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTAGGTC 37 ||| ||||||||||||||||| Sbjct 8936320 TTTTGTAATAATTATTAGGTC 8936340 Score = 31.9 bits (34), Expect = 4.2 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 4 TCATATAAAATTCTTTAGTAAT 25 ||||||||||| |||||| ||| Sbjct 6873832 TCATATAAAATGCTTTAGAAAT 6873811 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 4 TCATATAAAATTCTTTA 20 ||||||||||||||||| Sbjct 11568102 TCATATAAAATTCTTTA 11568118 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 14329497 TTTAGTAATAATTATTA 14329513 Score = 31.9 bits (34), Expect = 4.2 Identities = 26/31 (84%), Gaps = 2/31 (6%) Strand=Plus/Plus Query 1 GTATCATAT--AAAATTCTTTAGTAATAATT 29 ||||||| | |||||||||||| |||||| Sbjct 26354237 GTATCATTTTTAAAATTCTTTAGAGATAATT 26354267 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 33.7 bits (36), Expect = 1.2 Identities = 26/31 (84%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 25 TAATTATTAGGTCTTAAGAAATACAGTAGTT 55 ||||||||||| || | |||||||||| || Sbjct 19631213 TAATTATTAGGCTTTTATAAATACAGTATTT 19631183 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 7 TATAAAATTCTTTAGTAATAATTAT 31 |||| | || ||||||||||||||| Sbjct 2565703 TATATAGTTATTTAGTAATAATTAT 2565679 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 3 ATCATATAAAATTCTTTAGTAATAA 27 || ||||||||||| || ||||||| Sbjct 8753719 ATAATATAAAATTCCTTTGTAATAA 8753695 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 8 ATAAAATTCTTTAGTAATAATTATT 32 ||||||||||||| ||| ||| ||| Sbjct 13877436 ATAAAATTCTTTAATAAAAATAATT 13877412 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 23020746 TTTAGTAATAATTATTA 23020730 Score = 31.9 bits (34), Expect = 4.2 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 8 ATAAAATTCTTTAGTAATAA 27 ||||||||||||| |||||| Sbjct 27455387 ATAAAATTCTTTATTAATAA 27455368 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 11 AAATTCTTTAGTAATAATTATTAGG 35 |||||||| | ||||||||||||| Sbjct 33552851 AAATTCTTAAAAAATAATTATTAGG 33552875 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 3 ATCATATAAAATTCTTTAGTAATAATTA 30 |||| | | |||||||||||||| |||| Sbjct 16512528 ATCAAACACAATTCTTTAGTAATCATTA 16512501 Score = 33.7 bits (36), Expect = 1.2 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 7 TATAAAATTCTTTAGTAATAATTATT 32 |||| ||||| | ||||||||||||| Sbjct 23779938 TATATAATTCCTCAGTAATAATTATT 23779963 Score = 33.7 bits (36), Expect = 1.2 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 3 ATCATATAAAATTCTTTAGTAATAATTA 30 |||| | | |||||||||||||| |||| Sbjct 24093309 ATCAAACACAATTCTTTAGTAATCATTA 24093336 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 33.7 bits (36), Expect = 1.2 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 14 TTCTTTAGTAATAATTATTAGGT 36 ||||| || |||||||||||||| Sbjct 23251325 TTCTTGAGAAATAATTATTAGGT 23251347 Score = 31.9 bits (34), Expect = 4.2 Identities = 28/35 (80%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 12 AATTCTTTAGTAATAATTATTAGGTCTTAAGAAAT 46 || ||||| | || ||||||||||| | | ||||| Sbjct 5206962 AAATCTTTTGAAAGAATTATTAGGTTTGAGGAAAT 5206996 Score = 31.9 bits (34), Expect = 4.2 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 32 TAGGTCTTAAGAAATACAGT 51 |||| ||||||||||||||| Sbjct 20890541 TAGGACTTAAGAAATACAGT 20890560 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 33.7 bits (36), Expect = 1.2 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 18 TTAGTAATAATTATTAGGTCTTA 40 || |||||||||||||||| ||| Sbjct 18179976 TTTGTAATAATTATTAGGTATTA 18179954 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 7685706 TTTAGTAATAATTATTA 7685722 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 20 AGTAATAATTATTAGGT 36 ||||||||||||||||| Sbjct 17138093 AGTAATAATTATTAGGT 17138109 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 7 TATAAAATTCTTTAGTAATAATTAT 31 |||||||||||| ||||| | |||| Sbjct 22583206 TATAAAATTCTTCAGTAAGATTTAT 22583182 >Query1 on lcl|Jm6S| Query1 on lcl|Jm6S Length=22373256 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 5645901 TTTAGTAATAATTATTA 5645885 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 31.9 bits (34), Expect = 4.2 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 12 AATTCTTTAGTAATAATTATTA 33 |||||| || |||||||||||| Sbjct 4435372 AATTCTATAATAATAATTATTA 4435393 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 4823649 TTTAGTAATAATTATTA 4823633 Score = 31.9 bits (34), Expect = 4.2 Identities = 28/33 (85%), Gaps = 3/33 (9%) Strand=Plus/Minus Query 1 GTATCATATAAAATTCT-TTAGTAATAATTATT 32 ||||||||||||||| | ||||| || ||||| Sbjct 5994589 GTATCATATAAAATTATATTAGTGAT--TTATT 5994559 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 8339587 TTTAGTAATAATTATTA 8339603 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 31.9 bits (34), Expect = 4.2 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 10 AAAATTCTTTAGTAATAATT 29 ||||||||||||||| |||| Sbjct 1518083 AAAATTCTTTAGTAAGAATT 1518102 Score = 31.9 bits (34), Expect = 4.2 Identities = 22/24 (92%), Gaps = 1/24 (4%) Strand=Plus/Plus Query 8 ATAAAATTCTTTAGTAA-TAATTA 30 ||||| ||||||||||| |||||| Sbjct 6376217 ATAAATTTCTTTAGTAAGTAATTA 6376240 Score = 31.9 bits (34), Expect = 4.2 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTAGGT 36 || ||||||||||||||||| Sbjct 7683656 TTAAGTAATAATTATTAGGT 7683637 Score = 31.9 bits (34), Expect = 4.2 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Plus Query 19 TAGTAATAATTATTAGGTCTTAAGAAATA 47 ||||||||||||||| | |||| ||||| Sbjct 13707032 TAGTAATAATTATTA-GAATTAAAAAATA 13707059 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 17 TTTAGTAATAATTATTA 33 ||||||||||||||||| Sbjct 22640353 TTTAGTAATAATTATTA 22640337 Score = 31.9 bits (34), Expect = 4.2 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 7 TATAAAATTCTTTAGTAATAAT 28 || ||||||| ||||||||||| Sbjct 29300058 TAGAAAATTCATTAGTAATAAT 29300079 Score = 31.9 bits (34), Expect = 4.2 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 2 TATCATATAAAATTCTTTAGTAATAATTATTA 33 ||| ||| | ||||| ||| ||||||||||| Sbjct 29654231 TATTATAAATAATTCGTTATAAATAATTATTA 29654200 Score = 31.9 bits (34), Expect = 4.2 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 2 TATCATATAAAATTCTTTAGTAATAATTATTA 33 ||| ||| | ||||| ||| ||||||||||| Sbjct 29958740 TATTATAAATAATTCGTTATAAATAATTATTA 29958709 Score = 31.9 bits (34), Expect = 4.2 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 2 TATCATATAAAATTCTTTAGTAATAATTATTA 33 ||| ||| | ||||| ||| ||||||||||| Sbjct 30005524 TATTATAAATAATTCGTTATAAATAATTATTA 30005493 Score = 31.9 bits (34), Expect = 4.2 Identities = 29/37 (78%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 6 ATATAAAATTCTTTAGTAATAATTATTAGGTCTTAAG 42 |||||| | | ||| |||||||||||| |||| || Sbjct 35431738 ATATAACAATACTTATAAATAATTATTAGATCTTTAG 35431774 Score = 31.9 bits (34), Expect = 4.2 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 4 TCATATAAAATTCTTTA 20 ||||||||||||||||| Sbjct 35797464 TCATATAAAATTCTTTA 35797448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17420422767 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2