BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1200 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr3D 86.0 8e-15 lcl|Jr2D 82.4 1e-13 lcl|Jr3S 78.8 1e-12 lcl|Jr5D 62.6 9e-08 lcl|Jr1D 59.0 1e-06 lcl|Jr5S 41.0 0.29 lcl|Jr4D 41.0 0.29 lcl|Jr7D 39.2 1.0 lcl|Jr2S 39.2 1.0 lcl|Jr1S 39.2 1.0 lcl|Jr8D 37.4 3.6 lcl|Jr6S 37.4 3.6 lcl|Jr6D 37.4 3.6 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 86.0 bits (94), Expect = 8e-15 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 553 GGTCCTTTGCGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAAT-CAAGGCCTTC 611 |||||||||| || | || || || | ||||| ||||| ||||| |||| || Sbjct 36014851 GGTCCTTTGCAGGTTTAGGTTTTCTGTCATTATACCTGTCTGGAAAAATTCAAGTATTTG 36014910 Query 612 AACAATGAAGGACATGTGGCGAAACTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGT 671 | | || || |||| ||| ||||| ||| | || || | || ||||| | || | Sbjct 36014911 ATCGCAGAGGG-CATGCGGCAAAACTATGCATTGTTATTCTTCCACTGCTCGTTGCATCC 36014969 Query 672 CTTGTGGGGATATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAGGA 731 ||||| || || || || || ||||||||||||||||| |||||||| || || || ||| Sbjct 36014970 CTTGTTGGCATCTCACGGGTTGATGACTACTGGCACCATTGGCAAGACGTATTTGCTGGA 36015029 Query 732 G 732 | Sbjct 36015030 G 36015030 Score = 60.8 bits (66), Expect = 3e-07 Identities = 127/187 (68%), Gaps = 7/187 (4%) Strand=Plus/Plus Query 553 GGTCCTTTGCGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCA 612 ||||||| || || ||| || ||| | || | || || ||| ||| ||| || Sbjct 36023649 GGTCCTTCGCAGGTCTTGGCTTTCTTGCTTGGTATTTGTCAGGGAAATTCAGGGCATTTG 36023708 Query 613 ACAATGAAGGACATGTGGCGAAACTCTGCCTCGTGATCTTCCCT---CTGCTTGCCGCTT 669 | || || ||||| || ||||| || | || || | || |||||||| | | Sbjct 36023709 ATCATAGGGGCCATGTTGCAAAACTTTGTATTGTTTTCATGCCAATACTGCTTGCAGTT- 36023767 Query 670 GTCTTGTGGGGATATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAG 729 || |||||| | || || || |||||||| ||||| ||||||||||| || || || | Sbjct 36023768 --CTAGTGGGGTT-TCACGAGTTGATGACTATTGGCATCACTGGCAAGACGTATTTGCTG 36023824 Query 730 GAGCTCT 736 ||| ||| Sbjct 36023825 GAGGTCT 36023831 Score = 42.8 bits (46), Expect = 0.084 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 315 AGGACATGTGTGTACGATCTGCACCACAGCATCCTCGG 352 |||| | ||| |||||||||||||||||||| || || Sbjct 36013660 AGGAGAAATGTCTACGATCTGCACCACAGCATTCTTGG 36013697 Score = 39.2 bits (42), Expect = 1.0 Identities = 40/49 (82%), Gaps = 5/49 (10%) Strand=Plus/Minus Query 959 CTCCTCTCTTATTATTTGATTCATTA--TTTGGTTTTTCATTTTGATTT 1005 ||| ||||||||||||| ||| |||| ||| |||||| |||| |||| Sbjct 3826260 CTCTTCTCTTATTATTTTATT-ATTATTTTTAGTTTTT--TTTTAATTT 3826215 Score = 39.2 bits (42), Expect = 1.0 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 981 ATTATTTGGTTTTTCATTTTGATTTG 1006 |||||||||||||| ||||| ||||| Sbjct 7992321 ATTATTTGGTTTTTTATTTTCATTTG 7992346 Score = 37.4 bits (40), Expect = 3.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 978 TTCATTATTTGGTTTTTCATTTTGATTT 1005 ||||| |||| |||||||||||||||| Sbjct 15255392 TTCATAATTTTTTTTTTCATTTTGATTT 15255419 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 82.4 bits (90), Expect = 1e-13 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 553 GGTCCTTTGCGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCA 612 |||||||||| || || || || || || ||| | ||||| ||||| || | || Sbjct 5191784 GGTCCTTTGCTGGTCTAGGTTTTCTGTCTCTCTACTTATCTGGAAAAATAAAAGTATTTG 5191843 Query 613 ACAATGAAGGACATGTGGCGAAACTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGTC 672 | ||| ||| | || ||||| || || | | || ||| | ||| || | Sbjct 5191844 ATCGCAGAGGCCATATTGCAAAACTATGTATCATCTTTTTTCCTTTACTTTTTGCAACAC 5191903 Query 673 TTGTGGGGATATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAGGAG 732 |||| || || || || |||||||||||||||||||||||||| ||||| || || |||| Sbjct 5191904 TTGTTGGCATTTCACGGGTGGATGACTACTGGCACCACTGGCAGGATGTATTTGCTGGAG 5191963 Query 733 CTCTC 737 |||| Sbjct 5191964 GTCTC 5191968 Score = 62.6 bits (68), Expect = 9e-08 Identities = 138/201 (69%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 69 GTTCACA--CTATAAAGTCCCATGGAGGAAGAGTCGCTTCTAAACACAAGCACGATTGGA 126 ||||||| || | |||||||||||| | ||| || | ||| ||| || ||| Sbjct 5190814 GTTCACATACTGTGAAGTCCCATGGACTCACAGTTGCAAGGACACATTTGCATGACTGGC 5190873 Query 127 TCATACTCGT-CATCTTGATTGCCATCGAGATAGGCTTGAACCTCATCTCTCCTTTCTAC 185 | |||||||| | |||| || || ||||| | | | ||| ||| || || Sbjct 5190874 TGATACTCGTGCTTCTT-ATGCTGATTGAGATCATCCTATATGCAATCCATCCATTTTAT 5190932 Query 186 CGCTACGTGGGAAAAGACATGATGACTGACCTCAAGTA-CCCTTTCAAGGACAACACCGT 244 |||| || || || || ||||||| |||||||||||| ||| || || | ||| || || Sbjct 5190933 CGCTTTGTTGGGAAGGATATGATGAATGACCTCAAGTATCCCCTTAAAAG-CAATACAGT 5190991 Query 245 ACCTATCTGGTCTGTCCCTGT 265 ||| | ||| |||| ||||| Sbjct 5190992 ACCAGTTTGGGCTGTTCCTGT 5191012 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 78.8 bits (86), Expect = 1e-12 Identities = 130/188 (69%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 555 TCCTTTGCGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCAAC 614 |||||||| || ||| || ||| | || || || || ||||||| || || | Sbjct 2568527 TCCTTTGCTGGTCTTGGCTTTCTTGCTTGGTATCTGTCAGGGAAAATCAGGGTATTTGAT 2568468 Query 615 AATGAAGGACATGTGGCGAAACTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGTCTT 674 ||| || || || || || || || | || | || || | || || |||| | | Sbjct 2568467 CATGGGGGCCACGTTGCAAAGCTATGTATTGTTTTGTTGCCAATACTAGCTGCTTCTTTA 2568408 Query 675 GTGGGGATATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAGGAGCT 734 || || || ||||| || |||||||| ||||| |||||||||||||| || || |||| | Sbjct 2568407 GTTGGTATTTCTCGAGTTGATGACTATTGGCATCACTGGCAAGATGTATTTGCTGGAGGT 2568348 Query 735 CTCATTGG 742 || || || Sbjct 2568347 CTTATAGG 2568340 Score = 68.0 bits (74), Expect = 2e-09 Identities = 123/180 (68%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 553 GGTCCTTTGCGGGGCTTACATTCCTTTCCCTTTACCTCTCTGGCAAAATCAAGGCCTTCA 612 ||||||||||||| | || || || | ||| | ||||| ||| |||| | || Sbjct 2575376 GGTCCTTTGCGGGTTTAGGTTTTCTGTCATTATACTTGTCTGGAAAACTCAAAGTATTTG 2575317 Query 613 ACAATGAAGGACATGTGGCGAAACTCTGCCTCGTGATCTTCCCTCTGCTTGCCGCTTGTC 672 | ||| |||||||| ||||| ||| | || |||| || ||||| | || | | Sbjct 2575316 ATCGCAGAGGGCATGTGGCAAAACTATGCATTGTTTTCTTTCCGCTGCTCGTTGCATCCC 2575257 Query 673 TTGTGGGGATATCTCGTGTGGATGACTACTGGCACCACTGGCAAGATGTCTTCGCAGGAG 732 | | || | || || || ||||||| |||||||| |||||||| || || || |||| Sbjct 2575256 TCATTGGCGTCTCACGGGTTAATGACTATTGGCACCATTGGCAAGACGTATTTGCTGGAG 2575197 Score = 68.0 bits (74), Expect = 2e-09 Identities = 68/87 (78%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 179 TTTCTACCGCTACGTGGGAAAAGACATGATGACTGACCTCAAGTACCCTTTCAAGGACAA 238 |||| |||||| |||||||| || |||||||| ||||||||||| || | || || || Sbjct 2577359 TTTC-ACCGCTTTGTGGGAAAGGATATGATGACAGACCTCAAGTATCCCATGAAAGATAA 2577301 Query 239 CACCGTACCTATCTGGTCTGTCCCTGT 265 ||| || || | |||||||| || || Sbjct 2577300 CACAGTTCCCGTATGGTCTGTTCCGGT 2577274 Score = 66.2 bits (72), Expect = 7e-09 Identities = 77/104 (74%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 162 TTGAACCTCATCTCTCCTTTCTACCGCTACGTGGGAAAAGACATGATGACTGACCTCAAG 221 |||||||| || || || |||| || || ||| | | |||||||||||||||| Sbjct 2569660 TTGAACCTTATAGAACCATTTCACCGTTATGTTGGAGAGGGGATGATGACTGACCTCAGA 2569601 Query 222 TACCCTTTCAAGGACAACACCGTACCTATCTGGTCTGTCCCTGT 265 |||||||| || ||||| || || ||| | ||| |||| || || Sbjct 2569600 TACCCTTTGAAAGACAATACTGTTCCTTTTTGGGCTGTTCCAGT 2569557 Score = 37.4 bits (40), Expect = 3.6 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 315 AGGACATGTGTGTACGATCTGCACCACAGCATCCTCGG 352 |||| | ||| ||||||||||||||| |||| || || Sbjct 2576845 AGGAAAGATGTCTACGATCTGCACCACGGCATTCTTGG 2576808 Score = 37.4 bits (40), Expect = 3.6 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 972 ATTTGATTCATTATTTGGTTTTTCATTTTGATT 1004 |||||| | ||||||||||||| |||||| || Sbjct 28308432 ATTTGAATTTTTATTTGGTTTTTAATTTTGTTT 28308464 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 62.6 bits (68), Expect = 9e-08 Identities = 69/88 (78%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 179 TTTCTACCGCTACGTGGGAAAAGACATGATGACTGACCTCAAGTA-CCCTTTCAAGGACA 237 |||| || ||| |||||||| || |||||||| ||||||||||| ||| | ||||| | Sbjct 27618830 TTTC-ACTGCTTTGTGGGAAAGGATATGATGACAGACCTCAAGTATCCCATGAAAGGA-A 27618887 Query 238 ACACCGTACCTATCTGGTCTGTCCCTGT 265 ||| || ||| | |||||||| || || Sbjct 27618888 TCACAGTTCCTGTATGGTCTGTTCCGGT 27618915 Score = 39.2 bits (42), Expect = 1.0 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1092 CCACTCTTCATGAAATTGACGTTTTTCTG 1120 ||||||||||||||| |||| || ||||| Sbjct 19045711 CCACTCTTCATGAAACTGACCTTCTTCTG 19045739 Score = 37.4 bits (40), Expect = 3.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1079 CATTTTTGTAAATCCACTCTTCATGAAA 1106 || |||||||||||| ||||| |||||| Sbjct 1815505 CAATTTTGTAAATCCTCTCTTAATGAAA 1815532 Score = 37.4 bits (40), Expect = 3.6 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 904 ATTCAACATCTCTCGAAAACATGGAATCTGGCACT 938 |||||||||||||| |||| | | ||||| |||| Sbjct 32299409 ATTCAACATCTCTCTAAAAGCTTGCATCTGCCACT 32299443 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 59.0 bits (64), Expect = 1e-06 Identities = 69/88 (78%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 179 TTTCTACCGCTACGTGGGAAAAGACATGATGACTGACCTCAAGTA-CCCTTTCAAGGACA 237 |||| || ||| |||||||| || |||||||| ||||||||||| ||| | ||||| | Sbjct 39928183 TTTC-ACTGCTTTGTGGGAAA-GAAATGATGACAGACCTCAAGTATCCCATGAAAGGA-A 39928127 Query 238 ACACCGTACCTATCTGGTCTGTCCCTGT 265 ||| || ||| | |||||||| || || Sbjct 39928126 TCACAGTTCCTGTATGGTCTGTTCCAGT 39928099 Score = 37.4 bits (40), Expect = 3.6 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 967 TTATTATTTGATTCATTATTTGGTTTTTCATTTTG 1001 ||||| || | ||| || |||||||||||||||| Sbjct 30939752 TTATTTTTAAAATCAGTAATTGGTTTTTCATTTTG 30939786 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 41.0 bits (44), Expect = 0.29 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 938 TTCCACCGCTCCCAGATGATCCTCCTC 964 |||| |||||||||||||| ||||||| Sbjct 15217433 TTCCCCCGCTCCCAGATGAACCTCCTC 15217407 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 41.0 bits (44), Expect = 0.29 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 1093 CACTCTTCATGAAATTGACGTTTTTCT 1119 |||||||||||||| |||| ||||||| Sbjct 2511782 CACTCTTCATGAAACTGACATTTTTCT 2511808 Score = 39.2 bits (42), Expect = 1.0 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1092 CCACTCTTCATGAAATTGACGTTTTTCTG 1120 ||||||||||||||| |||| || ||||| Sbjct 7648695 CCACTCTTCATGAAACTGACCTTCTTCTG 7648667 Score = 39.2 bits (42), Expect = 1.0 Identities = 37/46 (80%), Gaps = 1/46 (2%) Strand=Plus/Plus Query 959 CTCCTCTCTTATTATTTGATTCATTATTTGGTTTTTCATTTTGATT 1004 |||||||||||||| || ||| | ||||| ||||| |||| ||| Sbjct 14132194 CTCCTCTCTTATTA-TTCATTTACTATTTTTTTTTTTTTTTTAATT 14132238 Score = 37.4 bits (40), Expect = 3.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 984 ATTTGGTTTTTCATTTTGATTTG 1006 ||||||||||||||||| ||||| Sbjct 32756217 ATTTGGTTTTTCATTTTTATTTG 32756239 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 39.2 bits (42), Expect = 1.0 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 978 TTCATTATTTGGTTTTTCATTTTGATTTG 1006 ||||||||||| ||| ||||||| ||||| Sbjct 11203038 TTCATTATTTGTTTTGTCATTTTCATTTG 11203010 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.0 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 985 TTTGGTTTTTCATTTTGATTT 1005 ||||||||||||||||||||| Sbjct 34102057 TTTGGTTTTTCATTTTGATTT 34102037 Score = 37.4 bits (40), Expect = 3.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 978 TTCAT-TATTTGGTTTTTCATTTTGAT 1003 ||||| ||||| ||||||||||||||| Sbjct 18074523 TTCATCTATTTTGTTTTTCATTTTGAT 18074497 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 1.0 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 983 TATTTGGTTTTTCATTTTGATTTGGC 1008 ||||||| ||||||||||| |||||| Sbjct 6476643 TATTTGGCTTTTCATTTTGTTTTGGC 6476668 Score = 37.4 bits (40), Expect = 3.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 977 ATTCATTATTTGGTTTTTCATTTTGAT 1003 |||||||||||||||||| || ||||| Sbjct 2811427 ATTCATTATTTGGTTTTT-ATGTTGAT 2811452 Score = 37.4 bits (40), Expect = 3.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 967 TTATTATTTGATTCATTATT 986 |||||||||||||||||||| Sbjct 14930163 TTATTATTTGATTCATTATT 14930182 Score = 37.4 bits (40), Expect = 3.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 357 CTCTTCGCCGTCTTGATAACTGG 379 ||||| ||||||||||||||||| Sbjct 18589063 CTCTTGGCCGTCTTGATAACTGG 18589085 Score = 37.4 bits (40), Expect = 3.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1017 TGAGATTGTGAATGGTGTAG 1036 |||||||||||||||||||| Sbjct 24798474 TGAGATTGTGAATGGTGTAG 24798493 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 3.6 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 775 TCTACCCCAACCCTTACCACGAAGAAGGATGGG 807 ||||||||||||| ||||||| |||| |||| Sbjct 6472325 TCTACCCCAACCCCCACCACGACGAAGTGTGGG 6472293 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 37.4 bits (40), Expect = 3.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 984 ATTTGGTTTTTCATTTTGATTTG 1006 ||||| ||||||||||||||||| Sbjct 3702538 ATTTGTTTTTTCATTTTGATTTG 3702560 Score = 37.4 bits (40), Expect = 3.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 596 CAAAATCAAGGCCTTCAACAATGAA 620 ||||||||||| |||||| |||||| Sbjct 6646929 CAAAATCAAGGGCTTCAAAAATGAA 6646905 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 37.4 bits (40), Expect = 3.6 Identities = 31/37 (84%), Gaps = 2/37 (5%) Strand=Plus/Minus Query 967 TTATTATTTGATTCATTATTTGGTTTTTCATTTTGAT 1003 ||||| ||||| || |||| ||||||||||||||| Sbjct 11807385 TTATTTTTTGA--CAAAATTTAGTTTTTCATTTTGAT 11807351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625028839554 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2