BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1262 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr3S 158 2e-36 lcl|Jr3D 131 2e-28 lcl|Jr2D 131 2e-28 lcl|Jr6S 69.8 6e-10 lcl|Jr8S 59.0 1e-06 lcl|Jr8D 59.0 1e-06 lcl|Jr1D 53.6 5e-05 lcl|Jr5D 42.8 0.088 lcl|Jr1S 41.0 0.31 lcl|Jr7S 37.4 3.7 lcl|Jr6D 37.4 3.7 lcl|Jr4S 37.4 3.7 lcl|Jr2S 37.4 3.7 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 158 bits (174), Expect = 2e-36 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 204 ATGCCTGAAATTCATTTGGGTGCTCATACAATAAGATCCCATGGAGTAACAGTCGCGAGG 263 ||||| |||||||||||||||| || || |||||||| |||||||| ||||| || || Sbjct 2569774 ATGCCAGAAATTCATTTGGGTGTACACACTATAAGATCACATGGAGTTACAGTGGCAAGA 2569715 Query 264 TTCCACATGCATGACTGGCTCATTCTTCTGCTGCTAATAGTCATTGAAATTGTTCTTAAT 323 | || ||||||||||||| |||||| || || | || | || || || | || Sbjct 2569714 ATGCATGTGCATGACTGGCTAATTCTTGGCCTTCTTGTGGTGCTAGACATCATTTTGAAC 2569655 Query 324 GTCATCGAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCT 383 | || ||||| ||||| |||| ||||||||| | ||| | ||||| |||||||||||| Sbjct 2569654 CTTATAGAACCATTTCACCGTTATGTTGGAGAGGGGATGATGACTGACCTCAGATACCCT 2569595 Query 384 CTGCAGGACAACACAATTCCTTTCTGGGCTGTCCC 418 || | ||||| || ||||||| |||||||| || Sbjct 2569594 TTGAAAGACAATACTGTTCCTTTTTGGGCTGTTCC 2569560 Score = 150 bits (166), Expect = 2e-34 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 714 TCGTTTGCTGGTCTAGGATTTCTATCGTTATACTTGTCTGGGAAAATCAGGGTGTTTGAC 773 || ||||||||||| || ||||| | | || |||| |||||||||||||| ||||| Sbjct 2568527 TCCTTTGCTGGTCTTGGCTTTCTTGCTTGGTATCTGTCAGGGAAAATCAGGGTATTTGAT 2568468 Query 774 CAGAGAGGGCATGTTGCAAAGCTCTGCATTGTGATTTTACCTCTACTGGTTGCAGCATTG 833 || | || || ||||||||||| || ||||| | || || |||| | ||| | || Sbjct 2568467 CATGGGGGCCACGTTGCAAAGCTATGTATTGTTTTGTTGCCAATACTAGCTGCTTCTTTA 2568408 Query 834 GTTGGTGTATCCAGAGTTGATGACTATTGGCATCACTGGCAAGATGTTTTTGGAGGAGCT 893 |||||| | || |||||||||||||||||||||||||||||||||| |||| |||| | Sbjct 2568407 GTTGGTATTTCTCGAGTTGATGACTATTGGCATCACTGGCAAGATGTATTTGCTGGAGGT 2568348 Query 894 ATCATAGG 901 | ||||| Sbjct 2568347 CTTATAGG 2568340 Score = 140 bits (154), Expect = 4e-31 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 712 GGTCGTTTGCTGGTCTAGGATTTCTATCGTTATACTTGTCTGGGAAAATCAGGGTGTTTG 771 |||| ||||| ||| |||| ||||| || |||||||||||||| ||| ||| || |||| Sbjct 2575376 GGTCCTTTGCGGGTTTAGGTTTTCTGTCATTATACTTGTCTGGAAAACTCAAAGTATTTG 2575317 Query 772 ACCAGAGAGGGCATGTTGCAAAGCTCTGCATTGTGATTTTACCTCTACTGGTTGCAGCAT 831 | | ||||||||||| ||||| || |||||||| | || || || || |||||| | Sbjct 2575316 ATCGCAGAGGGCATGTGGCAAAACTATGCATTGTTTTCTTTCCGCTGCTCGTTGCATCCC 2575257 Query 832 TGGTTGGTGTATCCAGAGTTGATGACTATTGGCATCACTGGCAAGATGTTTTTGGAGGAG 891 | |||| || || | ||| ||||||||||||| || |||||||| || |||| |||| Sbjct 2575256 TCATTGGCGTCTCACGGGTTAATGACTATTGGCACCATTGGCAAGACGTATTTGCTGGAG 2575197 Score = 86.0 bits (94), Expect = 8e-15 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 506 AGGGCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGT 565 ||| ||| | || ||| |||| || || | || ||||| ||||| || || || | ||| Sbjct 2569259 AGGTCTTCTATTTTCTATACTGATCACTGCAGTTATAACGGATGCGATCAAAGATGGTGT 2569200 Query 566 TGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGG 610 |||||| || ||||| || ||||||||||||||||| ||||| || Sbjct 2569199 TGGTCGTCCACGTCCAGACTTCTTTTGGCGTTGTTTTCCTGATGG 2569155 Score = 59.0 bits (64), Expect = 1e-06 Identities = 43/50 (86%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 960 GGTTGGGGACCTCATGCCTACTTCCAGATGCTGGCAGACTCAAGAAATGA 1009 ||||||||||||||||| || |||| ||| |||||||||| ||||||| Sbjct 2567493 GGTTGGGGACCTCATGCGTATTTCCGCATGTTGGCAGACTCTCGAAATGA 2567444 Score = 57.2 bits (62), Expect = 4e-06 Identities = 52/66 (79%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 438 CCTTTTGCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCAT 497 ||||||||| ||||| | ||||||||||| |||| ||||||| ||| ||||| || Sbjct 2569428 CCTTTTGCTTTCATTCTCATCTACTACTTCATCAGAAGGGATGTTTTTGATCTGCACCAA 2569369 Query 498 GCAATA 503 || ||| Sbjct 2569368 GCCATA 2569363 Score = 51.8 bits (56), Expect = 2e-04 Identities = 39/46 (85%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 907 CTGTGGCCACATTTTGTTATCTGCAATTTTTCCCTCCTCCATACGA 952 ||||||| ||||||| |||| |||||||||||| || ||||| || Sbjct 2575090 CTGTGGCAGCATTTTGCTATCGGCAATTTTTCCCACCCCCATATGA 2575045 Score = 39.2 bits (42), Expect = 1.1 Identities = 33/41 (80%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 672 AAAGAGGGACACAAGAGCTTCCCCAGCGGCCACACATCTTG 712 || || ||||||||||| ||||| ||||| || || || || Sbjct 2575716 AAGGAAGGACACAAGAGTTTCCCAAGCGGTCATACTTCATG 2575676 Score = 39.2 bits (42), Expect = 1.1 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 9 ATTGGACGAACAAAAAACTTTATCTTTCCTTCCTTT 44 || ||| || || ||||||| || |||||||||||| Sbjct 11976342 ATGGGATGATCACAAAACTTGATTTTTCCTTCCTTT 11976307 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 131 bits (144), Expect = 2e-28 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 712 GGTCGTTTGCTGGTCTAGGATTTCTATCGTTATACTTGTCTGGGAAAATCAGGGTGTTTG 771 |||| ||||| ||| |||| ||||| || |||||| ||||||| ||||| || |||| Sbjct 36014851 GGTCCTTTGCAGGTTTAGGTTTTCTGTCATTATACCTGTCTGGAAAAATTCAAGTATTTG 36014910 Query 772 ACCAGAGAGGGCATGTTGCAAAGCTCTGCATTGTGATTTTACCTCTACTGGTTGCAGCAT 831 | | |||||||||| ||||| || |||||||| ||| | || || || |||||| | Sbjct 36014911 ATCGCAGAGGGCATGCGGCAAAACTATGCATTGTTATTCTTCCACTGCTCGTTGCATCCC 36014970 Query 832 TGGTTGGTGTATCCAGAGTTGATGACTATTGGCATCACTGGCAAGATGTTTTTGGAGGAG 891 | ||||| | || | ||||||||||| ||||| || |||||||| || |||| |||| Sbjct 36014971 TTGTTGGCATCTCACGGGTTGATGACTACTGGCACCATTGGCAAGACGTATTTGCTGGAG 36015030 Score = 131 bits (144), Expect = 2e-28 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 204 ATGCCTGAAATTCATTTGGGTGCTCATACAATAAGATCCCATGGAGTAACAGTCGCGAGG 263 ||||| ||| ||| ||||||||||| ||||||||||| ||||| || |||| || || Sbjct 36022519 ATGCCAGAAGCTCAATTGGGTGCTCACACAATAAGATCACATGGTGTTGCAGTGGCAAGA 36022578 Query 264 TTCCACATGCATGACTGGCTCATTCTTCTGCTGCTAATAGTCATTGAAATTGTTCTTAAT 323 | || |||||||| ||||| | |||| |||| || | || || || | || | || Sbjct 36022579 CTACATATGCATGATTGGCTAAGTCTTGTGCTTCTTGTGGTGATAGACCTCATTTTAAAC 36022638 Query 324 GTCATCGAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCT 383 | || ||||| |||||||| ||||| ||||| | ||| | | || ||||||||||| Sbjct 36022639 TTTATAGAACCATTTCATCGCTTTGTCGGAGAGGGAATGATGATGGACCTCAGATACCCA 36022698 Query 384 CTGCAGGACAACACAATTCCTTTCTGGGCTGTCCC 418 || | | ||| || |||| || |||||||| || Sbjct 36022699 TTGAAAGGCAATACTGTTCCCTTTTGGGCTGTTCC 36022733 Score = 127 bits (140), Expect = 3e-27 Identities = 137/180 (76%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 712 GGTCGTTTGCTGGTCTAGGATTTCTATCGTTATACTTGTCTGGGAAAATCAGGGTGTTTG 771 |||| || || ||||| || ||||| | | || ||||| |||||| |||||| |||| Sbjct 36023649 GGTCCTTCGCAGGTCTTGGCTTTCTTGCTTGGTATTTGTCAGGGAAATTCAGGGCATTTG 36023708 Query 772 ACCAGAGAGGGCATGTTGCAAAGCTCTGCATTGTGATTTTACCTCTACTGGTTGCAGCAT 831 | || || || ||||||||||| || || ||||| | | || ||||| |||||| Sbjct 36023709 ATCATAGGGGCCATGTTGCAAAACTTTGTATTGTTTTCATGCCAATACTGCTTGCAGTTC 36023768 Query 832 TGGTTGGTGTATCCAGAGTTGATGACTATTGGCATCACTGGCAAGATGTTTTTGGAGGAG 891 | | ||| || || ||||||||||||||||||||||||||||||| || |||| |||| Sbjct 36023769 TAG-TGGGGTTTCACGAGTTGATGACTATTGGCATCACTGGCAAGACGTATTTGCTGGAG 36023827 Score = 100 bits (110), Expect = 4e-19 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 506 AGGGCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGT 565 ||| ||| | || |||||||||||||| | || ||||||||||| || || || | || Sbjct 36023032 AGGTCTTCTATTTTCTGTACTTATAACTGCAGTTATAACCGATGCAATCAAAGATGGAGT 36023091 Query 566 TGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGG 610 |||||| || ||||| || ||||||||||| ||||||||||| || Sbjct 36023092 TGGTCGTCCACGTCCAGACTTCTTTTGGCGCTGTTTCCCTGATGG 36023136 Score = 59.0 bits (64), Expect = 1e-06 Identities = 50/62 (81%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 438 CCTTTTGCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCAT 497 |||||| |||||||| | ||||||||||| |||| |||||||| || |||||||| Sbjct 36022864 CCTTTTATTGTCATTTTAATCTACTACTTCATCAGAAGGGATGTTTACGATCTGCATCAA 36022923 Query 498 GC 499 || Sbjct 36022924 GC 36022925 Score = 48.2 bits (52), Expect = 0.002 Identities = 34/39 (87%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 563 TGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTT 601 ||||||||||||||| | || |||||||||| |||||| Sbjct 10550743 TGTTGGTCGACCTCGAGCAGACTTCTTTTGGCATTGTTT 10550705 Score = 48.2 bits (52), Expect = 0.002 Identities = 34/39 (87%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 563 TGTTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTT 601 ||||| ||||||||| | || ||||||||||||||||| Sbjct 21929617 TGTTGATCGACCTCGGGCAGACTTCTTTTGGCGTTGTTT 21929655 Score = 42.8 bits (46), Expect = 0.088 Identities = 35/43 (81%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 670 TCAAAGAGGGACACAAGAGCTTCCCCAGCGGCCACACATCTTG 712 |||| || ||||||||||| ||||| ||||| || || || || Sbjct 36014451 TCAAGGAAGGACACAAGAGTTTCCCAAGCGGGCATACTTCATG 36014493 Score = 42.8 bits (46), Expect = 0.088 Identities = 26/28 (93%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 960 GGTTGGGGACCTCATGCCTACTTCCAGA 987 ||||||||||||||||| || ||||||| Sbjct 36024776 GGTTGGGGACCTCATGCGTATTTCCAGA 36024803 Score = 41.0 bits (44), Expect = 0.31 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 916 CATTTTGTTATCTGCAATTTTTCCCTCCTCCATACGA 952 ||||||||||| ||||||| || || || ||||| || Sbjct 36023989 CATTTTGTTATTTGCAATTCTTTCCACCCCCATATGA 36024025 Score = 37.4 bits (40), Expect = 3.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 991 TGGCAGACTCAAGAAATGAT 1010 |||||||||||||||||||| Sbjct 6509156 TGGCAGACTCAAGAAATGAT 6509137 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 131 bits (144), Expect = 2e-28 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 712 GGTCGTTTGCTGGTCTAGGATTTCTATCGTTATACTTGTCTGGGAAAATCAGGGTGTTTG 771 |||| |||||||||||||| ||||| || | ||||| ||||| ||||| | || |||| Sbjct 5191784 GGTCCTTTGCTGGTCTAGGTTTTCTGTCTCTCTACTTATCTGGAAAAATAAAAGTATTTG 5191843 Query 772 ACCAGAGAGGGCATGTTGCAAAGCTCTGCATTGTGATTTTACCTCTACTGGTTGCAGCAT 831 | | ||||| ||| ||||||| || || || | |||| ||| |||| ||||| || Sbjct 5191844 ATCGCAGAGGCCATATTGCAAAACTATGTATCATCTTTTTTCCTTTACTTTTTGCAACAC 5191903 Query 832 TGGTTGGTGTATCCAGAGTTGATGACTATTGGCATCACTGGCAAGATGTTTTTGGAGGAG 891 | ||||| | || | || |||||||| ||||| |||||||| ||||| |||| |||| Sbjct 5191904 TTGTTGGCATTTCACGGGTGGATGACTACTGGCACCACTGGCAGGATGTATTTGCTGGAG 5191963 Query 892 CTATCATAGG 901 | || |||| Sbjct 5191964 GTCTCTTAGG 5191973 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 506 AGGGCTTTTGTTCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGACGCTGT 565 ||| || ||||||||||| || | || | || || || ||||||||||| | ||||| Sbjct 5191355 AGGTCTCTTGTTCTCTGTTCTAGTCACAGCAGTTATTACAGATGCTATAAAAAATGCTGT 5191414 Query 566 TGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGG 610 ||| ||||||| || || ||||||||||||||||| ||||| || Sbjct 5191415 TGGCAGACCTCGGCCGGACTTCTTTTGGCGTTGTTTTCCTGATGG 5191459 Score = 84.2 bits (92), Expect = 3e-14 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210 GAAATTCATTTGGGTGCTCATACAATAAGATCCCATGGAGTAACAGTCGCGAGGTTCCAC 269 ||| |||| | ||| | ||||| | | ||||||||| | ||||| || ||| || Sbjct 5190801 GAAGTTCAGCTTGGTTCACATACTGTGAAGTCCCATGGACTCACAGTTGCAAGGACACAT 5190860 Query 270 ATGCATGACTGGCTCATTCTTCTGCTGCTAATAGTCATTGAAATTGTTCTTAATGTCATC 329 ||||||||||||| || || |||| || || | ||||| || | || ||| ||| Sbjct 5190861 TTGCATGACTGGCTGATACTCGTGCTTCTTATGCTGATTGAGATCATCCTATATGCAATC 5190920 Query 330 GAACCCTTTCATCGTTTTGTTGGAGAAGATATGCTCACTGATCTCAGATACCCTCTGCAG 389 | || ||| |||| |||||||| | |||||| | | ||| |||| || || || | Sbjct 5190921 CATCCATTTTATCGCTTTGTTGGGAAGGATATGATGAATGACCTCAAGTATCCCCTTAAA 5190980 Query 390 GACAACACAATTCCTTTCTGGGCTGTCCC 418 ||| ||| | || | |||||||| || Sbjct 5190981 AGCAATACAGTACCAGTTTGGGCTGTTCC 5191009 Score = 37.4 bits (40), Expect = 3.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 874 AAGATGTTTTTGGAGGAGCTATCAT 898 |||||||||||| ||||||| |||| Sbjct 15844740 AAGATGTTTTTGAAGGAGCTTTCAT 15844716 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 69.8 bits (76), Expect = 6e-10 Identities = 73/95 (77%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 517 TCTCTGTACTTATAACCGGTGTCATAACCGATGCTATAAAGGAC-GCTGTTGGTCGACCT 575 ||||||| || | || | || || || |||| |||||| | | ||||||||||||| Sbjct 3683822 TCTCTGTTCTAGTCACTGTAGTTATTACAGATGTTATAAAAAAATGATGTTGGTCGACCT 3683763 Query 576 CGTCCTGATTTCTTTTGGCGTTGTTTCCCTGACGG 610 || || || ||||||||||||||||| | ||| || Sbjct 3683762 CGGCCAGACTTCTTTTGGCGTTGTTTTCTTGATGG 3683728 Score = 37.4 bits (40), Expect = 3.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 991 TGGCAGACTCAAGAAATGAT 1010 |||||||||||||||||||| Sbjct 20105950 TGGCAGACTCAAGAAATGAT 20105931 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 59.0 bits (64), Expect = 1e-06 Identities = 50/62 (81%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 438 CCTTTTGCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCAT 497 |||||| |||||||| | ||||||||||| |||| |||||||| || |||||||| Sbjct 8883064 CCTTTTATTGTCATTTTAATCTACTACTTCATCAGAAGGGATGTTTACGATCTGCATCAA 8883123 Query 498 GC 499 || Sbjct 8883124 GC 8883125 Score = 37.4 bits (40), Expect = 3.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 473 AAATGATGTTTATGACCTGCATCATGCA 500 |||| |||| ||||| |||||||||||| Sbjct 18906775 AAATCATGTATATGAACTGCATCATGCA 18906802 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 59.0 bits (64), Expect = 1e-06 Identities = 50/62 (81%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 438 CCTTTTGCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCAT 497 |||||| |||||||| | ||||||||||| |||| |||||||| || |||||||| Sbjct 5061054 CCTTTTATTGTCATTTTAATCTACTACTTCATCAGAAGGGATGTTTACGATCTGCATCAA 5061113 Query 498 GC 499 || Sbjct 5061114 GC 5061115 Score = 37.4 bits (40), Expect = 3.7 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 427 CTGTTGTGCTACCTTTTGCTG-TCATT 452 ||||| ||||||||||||||| ||||| Sbjct 9061818 CTGTTCTGCTACCTTTTGCTGCTCATT 9061844 Score = 37.4 bits (40), Expect = 3.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1156 TCTTTGTACTCGTTATCTATCAATC 1180 ||||||||||||||||| || |||| Sbjct 17039834 TCTTTGTACTCGTTATCCATTAATC 17039810 Score = 37.4 bits (40), Expect = 3.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 616 GGATCTTTCACAATGTCACGAAG 638 ||||||| ||||||||||||||| Sbjct 27112631 GGATCTTCCACAATGTCACGAAG 27112609 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 53.6 bits (58), Expect = 5e-05 Identities = 34/37 (92%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 565 TTGGTCGACCTCGTCCTGATTTCTTTTGGCGTTGTTT 601 ||||||||||||| || || ||||||||||||||||| Sbjct 11268463 TTGGTCGACCTCGGCCAGACTTCTTTTGGCGTTGTTT 11268499 Score = 50.0 bits (54), Expect = 6e-04 Identities = 48/62 (77%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 438 CCTTTTGCTGTCATTTGTGTTTACTACTTCATTAGAAATGATGTTTATGACCTGCATCAT 497 |||||| |||||||| | ||||||||||| |||| ||||| || | |||||||| Sbjct 24068392 CCTTTTATTGTCATTTTAATCTACTACTTCATCAGAAGGGATGTATACAATCTGCATCAA 24068451 Query 498 GC 499 || Sbjct 24068452 GC 24068453 Score = 39.2 bits (42), Expect = 1.1 Identities = 34/40 (85%), Gaps = 2/40 (5%) Strand=Plus/Minus Query 441 TTTGCTGTCATTTGTGTTTACTAC-TTCATTAGAAATGAT 479 ||| | ||||||||||| |||||| |||||| || ||||| Sbjct 13797754 TTTTCAGTCATTTGTGTCTACTACATTCATT-GATATGAT 13797716 Score = 37.4 bits (40), Expect = 3.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 340 ATCGTTTTGTTGGAGAAGATATGCTCACTG 369 |||| | ||||||||||||||| ||| ||| Sbjct 26135503 ATCGATATGTTGGAGAAGATATTCTCTCTG 26135474 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 42.8 bits (46), Expect = 0.088 Identities = 28/31 (90%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1230 TTGGTTGGAAGCCCaaaaaaaaaaaaaaaaa 1260 ||||||||||| ||||||||||||||||| Sbjct 26028986 TTGGTTGGAAGAAAAAAAAAAAAAAAAAAAA 26029016 Score = 37.4 bits (40), Expect = 3.7 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 581 TGATTTCTTTTGGCGTTGTTTCCCTGA 607 |||||||||||| ||||||||||||| Sbjct 33358951 TGATTTCTTTTGA-GTTGTTTCCCTGA 33358926 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 41.0 bits (44), Expect = 0.31 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 345 TTTGTTGGAGAAGATATGCTCACTG 369 ||||||||||||||||| ||||||| Sbjct 17318975 TTTGTTGGAGAAGATATTCTCACTG 17318951 Score = 41.0 bits (44), Expect = 0.31 Identities = 40/51 (78%), Gaps = 2/51 (4%) Strand=Plus/Plus Query 1212 TAATCACAAGGCCCAAT--ATTGGTTGGAAGCCCaaaaaaaaaaaaaaaaa 1260 |||| |||||||||||| |||| ||| | | || ||||||||||||| Sbjct 27826847 TAATAACAAGGCCCAATAAATTGACATGAATCTCTAAGAAAAAAAAAAAAA 27826897 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 37.4 bits (40), Expect = 3.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1057 AGCTAGAGAGCGTACGTTGATGGAGAAGAG 1086 || |||||||||||||||| | ||| |||| Sbjct 2181184 AGATAGAGAGCGTACGTTGGTCGAGTAGAG 2181213 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 37.4 bits (40), Expect = 3.7 Identities = 37/46 (80%), Gaps = 3/46 (7%) Strand=Plus/Plus Query 994 CAGACTCAAGAAATG--ATGTCCAAGATTCAGCAG-GAATGAATCA 1036 ||| |||||||| | ||||||||||||||| || || | ||||| Sbjct 36252485 CAGCCTCAAGAAGTTTCATGTCCAAGATTCAGTAGAGATTAAATCA 36252530 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 3.7 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 850 TTGATGACTATTGGCATCACTGGCAAGATGTT 881 ||||| |||||||||||||||| ||| |||| Sbjct 10297596 TTGAT-ACTATTGGCATCACTGCCAAATTGTT 10297626 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 37.4 bits (40), Expect = 3.7 Identities = 29/35 (83%), Gaps = 6/35 (17%) Strand=Plus/Plus Query 1226 AATATTGGTTGGAAGCCCaaaaaaaaaaaaaaaaa 1260 ||||||||||| |||||||||||||||||| Sbjct 34366978 AATATTGGTTG------CAAAAAAAAAAAAAAAAA 34367006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658178358846 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2