BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1267 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr7S 199 5e-49 lcl|Jr4D 178 2e-42 lcl|Jr3S 154 2e-35 lcl|Jr3D 132 6e-29 lcl|Jr2D 102 1e-19 lcl|Jr4S 80.6 4e-13 lcl|Jr8S 71.6 2e-10 lcl|Jr6D 50.0 6e-04 lcl|Jr5D 42.8 0.088 lcl|Jr7D 37.4 3.8 lcl|Jr5S 37.4 3.8 lcl|Jr2S 37.4 3.8 lcl|Jr1S 37.4 3.8 lcl|Jr1D 37.4 3.8 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 199 bits (220), Expect = 5e-49 Identities = 176/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 731 AAGTACACACCGCAAAACTCGTGGCTCCAAGATGAGTTCAAGAAAGTTAACCGATCAGAG 790 || ||||| || ||| || | ||||||||| | ||| ||| ||||| || ||| | || Sbjct 19374189 AAATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAAAGTAAATCGAGCTGAA 19374248 Query 791 ACTCCGTGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 850 ||||| ||||| || ||||| ||||| | |||||||| |||||||| || || || ||| Sbjct 19374249 ACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTAT 19374308 Query 851 ATGGAAGGTGAGAGCATGAGAGTTACGTTTGAGCCATGGTTCGTCGAAAACAAAGTCGAT 910 |||||||| || ||||||||||| || ||||| | ||||| || |||| |||||| || Sbjct 19374309 ATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGAC 19374368 Query 911 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATCAG 950 || || ||||||||||||||||||||||| ||||| |||| Sbjct 19374369 ATTGTTTTTGCTGGTCATGTTCATGCCTATGAGCGTTCAG 19374408 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 611 CCTTTAAA-CCGTACAAGAACCGTTACCATGTTCCGTATAGAGCCTCACAGAGTACATCT 669 ||||| || || || | |||| | ||||| || || || ||| | || ||||||||||| Sbjct 19373966 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAGAGTACATCC 19374025 Query 670 CCACTTTGGTACTCAATCAAACGAGCCTCGGCTTACATCATCATACTCTCCTCTT 724 ||||||||||| || ||||| || || || || ||||||| | ||||| |||| Sbjct 19374026 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTT 19374080 Score = 82.4 bits (90), Expect = 1e-13 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1069 CATTTTCACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCGAGTTTCGGACACGC 1128 || ||| || || || ||||||||||| || || || |||| || || || || ||||| Sbjct 19374852 CAGTTTTACTGACCCACAACCAAGTTATTCTGCCTTCCGGGAAGCAAGCTTTGGGCACGC 19374911 Query 1129 CCTTTTGGAAATAAAAAACAGGACCCATGCACATTACACTTGGCATAGAAATAAAGAAGA 1188 || ||| ||||| || || |||||||| || || |||||||| | || |||| Sbjct 19374912 AATTCTGGCTATAAAGAATAGAACCCATGCTCACTATACTTGGCACCGCAACCAAGATAG 19374971 Query 1189 CGAAGCTGTTATTGCAGACTCTATTTGGTTGAAAAATAGATACTACTTGCCGGAGGAAGA 1248 | |||||| ||| || ||| ||||| | | || || |||| || || | ||||| Sbjct 19374972 TAATGCTGTTGCTGCTGATTCTCTTTGGATATACAACAGGCACTATTTTCCAGTTGAAGA 19375031 Score = 80.6 bits (88), Expect = 4e-13 Identities = 149/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 369 AGGTGATCTTGGACAAACATATGCCTCTAACCAGACATTGTACAACTACATGTCGAACCC 428 ||||||| | ||||| ||| | ||||| |||| | | | || || | ||||| Sbjct 19373445 AGGTGATTTGGGACAGACAAGTAATTCTAATGAGACGCTTGAGCATTATATTGCCAACCC 19373504 Query 429 GAAAGGCCAAGCGGTGCTTTTTGCCGGAGATTTGTCTTATGCTGATGACCATCCTAACCA 488 || | || | || | |||| || ||| | |||||||||||||| || || ||||| Sbjct 19373505 GACTGCGCAGACTATGTTGTTTGTAGGTGATCTTTCTTATGCTGATGATCACCCAAACCA 19373564 Query 489 CGACCAAAGCAAATGGGATTCATACGGCCGGTTTGTGGAACCAAGCGCCGCATATCAGCC 548 ||| | | |||||| ||| ||||| ||| | || || || || |||||||| Sbjct 19373565 TGACAATGAGAGATGGGACACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCC 19373624 Query 549 TTGGATTTGGGCTGCAGGGAACCACGAGATAGATTACGC 587 ||||||||| |||| || || || || | ||||| || Sbjct 19373625 ATGGATTTGGACTGCTGGCAATCATGAACTTGATTATGC 19373663 Score = 60.8 bits (66), Expect = 3e-07 Identities = 74/101 (73%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 970 GTACAATATCACTGACGGAATGAGTACTCCGGTGAAAGATCAAAATGCTCCGGTTTACAT 1029 ||||||||| || || ||| | || || || | || || ||| ||| || | ||||| Sbjct 19374518 GTACAATATAACAGATGGACTCAGCACGCCAATAAAGGACCAATCTGCACCAATATACAT 19374577 Query 1030 AACCATTGGAGATGGAGGCAACATAGAAGGAATCGCTAACA 1070 ||| ||||||||||| || || | ||||| || ||| ||| Sbjct 19374578 AACAATTGGAGATGGCGGTAATGTTGAAGGCATTGCTGACA 19374618 Score = 59.0 bits (64), Expect = 1e-06 Identities = 83/116 (72%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 260 AGTATAAAACTAAATACTTTTACGAGCTTGGAACAGGTCGCTCCACTAGACAATTCAACT 319 ||||| | ||||| |||||||| ||| |||||| || | | | | || ||| Sbjct 19373233 AGTATGACACTAAGTACTTTTATGAGATTGGAATTGGCGAGTGTGCCCGTCTGTTTCACT 19373292 Query 320 TGA---CTCCTCCAAAAGTCGGTCCAGATGTTCCTTATACATTTGGTGTTATAGGT 372 | | ||||||| ||||| || ||||||||||| || |||||||| |||| ||| Sbjct 19373293 TCAGAACTCCTCCCAAAGTGGGGCCAGATGTTCCATACACATTTGGCATTATTGGT 19373348 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 178 bits (196), Expect = 2e-42 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 731 AAGTACACACCGCAAAACTCGTGGCTCCAAGATGAGTTCAAGAAAGTTAACCGATCAGAG 790 || ||||| || ||| || | |||||| || | ||| ||| |||||||| ||| | || Sbjct 7757935 AAATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCTGAA 7757994 Query 791 ACTCCGTGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 850 ||||| ||||| || ||||| ||||| | |||||||| |||||||| || || || | | Sbjct 7757995 ACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTTT 7758054 Query 851 ATGGAAGGTGAGAGCATGAGAGTTACGTTTGAGCCATGGTTCGTCGAAAACAAAGTCGAT 910 |||||||| || ||||||||||| | ||||| | ||||| || |||| |||||| || Sbjct 7758055 ATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGAC 7758114 Query 911 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 948 || || || || ||||||||||||||||| ||||| || Sbjct 7758115 ATTGTGTTAGCCGGTCATGTTCATGCCTATGAGCGTTC 7758152 Score = 105 bits (116), Expect = 9e-21 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 843 ATCACTATATGGAAGGTGAGAGCATGAGAGTTACGTTTGAGCCATGGTTCGTCGAAAACA 902 |||| ||||||||||| || | ||||||||| | | ||||| |||||| || || | | Sbjct 28097844 ATCATTATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATA 28097903 Query 903 AAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 948 |||| ||| | |||||||||||||||||||||||||| || ||||| Sbjct 28097904 AAGTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 28097949 Score = 78.8 bits (86), Expect = 1e-12 Identities = 126/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1069 CATTTTCACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCGAGTTTCGGACACGC 1128 || |||||| || || ||||||||||| || || || |||| || || || || || || Sbjct 7758499 CAGTTTCACTGACCCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGC 7758558 Query 1129 CCTTTTGGAAATAAAAAACAGGACCCATGCACATTACACTTGGCATAGAAATAAAGAAGA 1188 | | | ||||| || ||||||||||| || || |||||||| | || |||| Sbjct 7758559 AACTCTCGCTATAAAGAATAGGACCCATGCCCACTATACTTGGCACCGTAACCAAGATAG 7758618 Query 1189 CGAAGCTGTTATTGCAGACTCTATTTGGTTGAAAAATAGATACTACTTGCCGGAGGAAGA 1248 | |||||| ||| || ||| ||||||| | || || |||| | || | ||||| Sbjct 7758619 TAATGCTGTTGCTGCTGATTCTCTTTGGTTATACAACAGGCACTATTATCCAGTTGAAGA 7758678 Query 1249 G 1249 | Sbjct 7758679 G 7758679 Score = 75.2 bits (82), Expect = 1e-11 Identities = 150/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 369 AGGTGATCTTGGACAAACATATGCCTCTAACCAGACATTGTACAACTACATGTCGAACC- 427 |||||||||||| ||||| ||| || || |||| | | | || | |||| Sbjct 28096611 AGGTGATCTTGGTCAAACTCATGATTCAAATAGGACACTCACCCATTATGAATTAAACCC 28096670 Query 428 --CGAAAGGCCAAGCGGTGCTTTTTGCCGGAGATTTGTCTTATGCTGATGACCATCCTAA 485 | |||||||| |||| | || | ||||| | |||||||| |||||| |||| Sbjct 28096671 AACAAAAGGCCAGATGGTGTTGTTCGTTGGAGACCTCTCTTATGCAGATGACTATCCATT 28096730 Query 486 CCACGACCAAAGCAAATGGGATTCATACGGCCGGTTTGTGGAACCAAGCGCCGCATATCA 545 || ||| | | || |||||| ||| || |||| | || || || || ||||| Sbjct 28096731 GCATGACAACAACAGGTGGGATACATGGGGAAGGTTCATAGAGAGAAATGCTGCTTATCA 28096790 Query 546 GCCTTGGATTTGGGCTGCAGGGAACCACGAGATAGATTACGC 587 |||||| | ||| ||||||| || || ||||| ||||| || Sbjct 28096791 ACCTTGGGTATGGACTGCAGGCAATCATGAGATCGATTATGC 28096832 Score = 69.8 bits (76), Expect = 6e-10 Identities = 85/115 (74%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 611 CCTTTAAA-CCGTACAAGAACCGTTACCATGTTCCGTATAGAGCCTCACAGAGTACATCT 669 ||||| || || || | |||| | ||||| || || || ||| | || || || ||||| Sbjct 7757680 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAAAGCACATCC 7757739 Query 670 CCACTTTGGTACTCAATCAAACGAGCCTCGGCTTACATCATCATACTCTCCTCTT 724 ||||||||||| || || || || || || || ||||||| | ||||| |||| Sbjct 7757740 CCACTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTT 7757794 Score = 64.4 bits (70), Expect = 3e-08 Identities = 84/116 (72%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 260 AGTATAAAACTAAATACTTTTACGAGCTTGGAACAGGTCGCTCCACTAGACAATTCAACT 319 ||||| | |||||||||||||| ||| |||| | || | | | | ||| | | Sbjct 7755938 AGTATGACACTAAATACTTTTATGAGATTGGGATTGGCGTGTGTGCCCGTCTGTTCCATT 7755997 Query 320 TGA---CTCCTCCAAAAGTCGGTCCAGATGTTCCTTATACATTTGGTGTTATAGGT 372 | | ||||||| ||||| || ||||||||||| || ||||||||| |||| ||| Sbjct 7755998 TCAGAACTCCTCCCAAAGTAGGGCCAGATGTTCCATACACATTTGGTATTATGGGT 7756053 Score = 62.6 bits (68), Expect = 9e-08 Identities = 46/54 (85%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 1007 GATCAAAATGCTCCGGTTTACATAACCATTGGAGATGGAGGCAACATAGAAGGA 1060 || ||| |||||| |||||||||||||||||||||||||| || | |||||| Sbjct 28098799 GACCAATCTGCTCCTGTTTACATAACCATTGGAGATGGAGGAAATCTTGAAGGA 28098852 Score = 53.6 bits (58), Expect = 5e-05 Identities = 44/54 (81%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 322 ACTCCTCCAAAAGTCGGTCCAGATGTTCCTTATACATTTGGTGTTATAGGTGAT 375 |||||||||| || || || |||||||| ||||||||||| | |||||| || Sbjct 28096233 ACTCCTCCAAGTGTTGGCCCTGATGTTCCATATACATTTGGCCTAATAGGTAAT 28096286 Score = 39.2 bits (42), Expect = 1.1 Identities = 34/40 (85%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 370 GGTGATCTTGGACAAACA-TATGCC-TCTAACCAGACATT 407 ||||||||||| |||||| ||| || |||||||| |||| Sbjct 10506661 GGTGATCTTGGCCAAACACTATTCCATCTAACCATTCATT 10506700 Score = 39.2 bits (42), Expect = 1.1 Identities = 42/56 (75%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 52 GTTCACATAACGCAAGGAGATCACAATGGTCGAGGTATGATCATCTCGTGGGTAAC 107 || || ||||| |||||||||||| | || ||| |||| |||| ||||| || Sbjct 28095878 GTGCATATAACTCAAGGAGATCACGAGGGAAAGGGTGTGATTGTCTCTTGGGTTAC 28095933 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 154 bits (170), Expect = 2e-35 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 731 AAGTACACACCGCAAAACTCGTGGCTCCAAGATGAGTTCAAGAAAGTTAACCGATCAGAG 790 || || ||||| ||| || | |||||| |||| || | ||||||||| | | ||| Sbjct 24737159 AAATATACACCTCAATACACATGGCTCGAAGAGGAACTACCGAAAGTTAATAGGGCCGAG 24737218 Query 791 ACTCCGTGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 850 || || |||||||||||||| || | || ||||| || ||| |||| ||||| ||| Sbjct 24737219 ACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCATTAT 24737278 Query 851 ATGGAAGGTGAGAGCATGAGAGTTACGTTTGAGCCATGGTTCGTCGAAAACAAAGTCGAT 910 ||||| || || | ||||||||| | ||||||| | ||||| || | | ||||| ||| Sbjct 24737279 ATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTATAAAGTTGAT 24737338 Query 911 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 948 | || |||||||||||||||||||| || |||||||| Sbjct 24737339 GTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24737376 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 608 AACCCTTTAAACCGTACAAGAACCGTTACCATGTTCCGTATAGAGCCTCACAGAGTACAT 667 |||| ||||| || |||| ||||||| ||||| || |||| ||| ||| ||||||| Sbjct 24736373 AACCTTTTAAGCCTTACACTCACCGTTATCATGTGCCTTATAAAGCTTCAAAGAGTACTG 24736432 Query 668 CTCCACTTTGGTACTCAATCAAACGAGCCTCGGCTTACATCAT 710 |||| ||||||| |||||||| |||| || ||||||||||| Sbjct 24736433 CTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCAT 24736475 Score = 64.4 bits (70), Expect = 3e-08 Identities = 80/110 (73%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 950 GAGCGAGTCTCCAACATTCAGTACAATATCACTGACGGAATGAGTACTCCGGTGAAAGAT 1009 || || || ||||||||| |||||| || | || || | || || || | |||| Sbjct 24737728 GAACGTGTATCCAACATTGCCTACAATGTCGTAAATGGTATTTGCACACCTGTAAGAGAT 24737787 Query 1010 CAAAATGCTCCGGTTTACATAACCATTGGAGATGGAGGCAACATAGAAGG 1059 ||| || || || |||||||||||||| |||||||| ||| | ||||| Sbjct 24737788 CAATCAGCGCCTGTATACATAACCATTGGTGATGGAGGGAACCTCGAAGG 24737837 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 132 bits (146), Expect = 6e-29 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 731 AAGTACACACCGCAAAACTCGTGGCTCCAAGATGAGTTCAAGAAAGTTAACCGATCAGAG 790 || ||||| || ||| || ||||| || | || || ||||||||| | | ||| Sbjct 5532707 AAATACACCCCTCAATACCAATGGCTTGAACAGGAATTGCCAAAAGTTAACAGGACTGAG 5532648 Query 791 ACTCCGTGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 850 || || ||| |||||||||| | || | || ||||| || ||| | || ||||| ||| Sbjct 5532647 ACACCTTGGTTGATTGTTCTTATGCATTCCCCCTGGTATAATAGCTACAACTATCATTAT 5532588 Query 851 ATGGAAGGTGAGAGCATGAGAGTTACGTTTGAGCCATGGTTCGTCGAAAACAAAGTCGAT 910 ||||| || || | ||||||||| | || |||| |||||| || | ||||||| ||| Sbjct 5532587 ATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTTGTGAAGTACAAAGTTGAT 5532528 Query 911 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 948 | || ||||| |||||||||||||| || || ||||| Sbjct 5532527 GTGGTATTTGCAGGTCATGTTCATGCTTATGAACGATC 5532490 Score = 89.7 bits (98), Expect = 7e-16 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 597 AGGCGAGACTCAACCCTTTAAACCGTACAAGAACCGTTACCATGTTCCGTATAGAGCCTC 656 ||| || || |||| ||||| || |||| || ||||||||||| || || | ||| || Sbjct 5533007 AGGGGAAACCGAACCTTTTAAGCCTTACACTAATCGTTACCATGTGCCTTACAAAGCTTC 5532948 Query 657 ACAGAGTACATCTCCACTTTGGTACTCAATCAAACGAGCCTCGGCTTACATCAT 710 | | ||||| |||| ||||||| |||||||| |||| || ||||||||||| Sbjct 5532947 AAACAGTACTGCTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCAT 5532894 Score = 64.4 bits (70), Expect = 3e-08 Identities = 80/110 (73%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 950 GAGCGAGTCTCCAACATTCAGTACAATATCACTGACGGAATGAGTACTCCGGTGAAAGAT 1009 ||||| || |||||| || |||||| | | || || | ||||| || || ||| Sbjct 5532171 GAGCGTGTATCCAACGTTGCATACAATGTTGTAAATGGTATTTGCACTCCTGTAAAGGAT 5532112 Query 1010 CAAAATGCTCCGGTTTACATAACCATTGGAGATGGAGGCAACATAGAAGG 1059 ||| ||||| || |||||||||||||| |||||||| || | ||||| Sbjct 5532111 CAATCAGCTCCTGTATACATAACCATTGGCGATGGAGGGAATCTTGAAGG 5532062 Score = 51.8 bits (56), Expect = 2e-04 Identities = 42/51 (82%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 322 ACTCCTCCAAAAGTCGGTCCAGATGTTCCTTATACATTTGGTGTTATAGGT 372 ||||| || |||| || || ||||| ||||||||||||||| | |||||| Sbjct 5533701 ACTCCCCCTGAAGTTGGCCCTGATGTGCCTTATACATTTGGTCTCATAGGT 5533651 Score = 37.4 bits (40), Expect = 3.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1209 CTATTTGGTTGAAAAATAGATACTA 1233 ||||||| |||||||||||| |||| Sbjct 32349429 CTATTTGTTTGAAAAATAGACACTA 32349405 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 102 bits (112), Expect = 1e-19 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 733 GTACACACCGCAAAACTCGTGGCTCCAAGATGAGTTCAAGAAAGTTAACCGATCAGAGAC 792 |||||| || ||| |||||| |||| ||||| | | ||| || | |||| Sbjct 40280854 GTACACCCCTCAATGGATGTGGCTTAAAGAAGAGTTAACAAGGGTTGACAGGGAGAAGAC 40280795 Query 793 TCCGTGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTATAT 852 ||| ||||| |||||||| | || | ||| ||||| |||||| | |||||| || Sbjct 40280794 TCCTTGGCTCATTGTTCTTATGCATGTGCCAATCTACAATAGCAATGAAGCTCACTACAT 40280735 Query 853 GGAAGGTGAGAGCATGAGAGTTACGTTTGAGCCATGGTTCGTCGAAAACAAAGTCGATAT 912 ||| || || || ||| ||| | |||||| |||||| || | ||||||| ||| | Sbjct 40280734 GGAGGGGGAAAGTATGCGAGCTGTATTTGAGAGTTGGTTCATCCATTACAAAGTTGATGT 40280675 Query 913 CGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 948 ||||||||||| ||||| ||||| || || |||| Sbjct 40280674 AGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATC 40280639 Score = 62.6 bits (68), Expect = 9e-08 Identities = 64/84 (76%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 502 TGGGATTCATACGGCCGGTTTGTGGAACCAAGCGCCGCATATCAGCCTTGGATTTGGGCT 561 ||||| ||| || | || || |||| ||| | ||||||||||| |||||||||||| Sbjct 40282620 TGGGACACATGGGGTCAATTCGTTGAACGAAGTACAGCATATCAGCCATGGATTTGGGCT 40282561 Query 562 GCAGGGAACCACGAGATAGATTAC 585 || || || || || ||||| ||| Sbjct 40282560 GCTGGAAATCATGAAATAGAGTAC 40282537 Score = 39.2 bits (42), Expect = 1.1 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 1015 TGCTCCGGTTTACATAACCATTGGAGATGGAGGCAA 1050 ||| || || |||||||| ||||||||||||| || Sbjct 40279569 TGCACCTGTGTACATAACAGTTGGAGATGGAGGAAA 40279534 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 845 CACTATATGGAAGGTGAGAGCATGAGAGTTACGTTTGAGCCATGGTTCGTCGAAAACAAA 904 ||||||||||||||||| || ||| ||| | |||||| |||||| ||| | | | Sbjct 1043506 CACTATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGA 1043565 Query 905 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 948 || ||| |||| |||||||| || ||||||||||| || |||| Sbjct 1043566 GTTGATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATC 1043609 Score = 68.0 bits (74), Expect = 2e-09 Identities = 66/85 (78%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 501 ATGGGATTCATACGGCCGGTTTGTGGAACCAAGCGCCGCATATCAGCCTTGGATTTGGGC 560 ||||||| ||| ||||| ||| | || | ||| | ||||||||||| ||||||||| | Sbjct 1042179 ATGGGATGCATGGGGCCGTTTTATTGAGCGAAGTACTGCATATCAGCCATGGATTTGGTC 1042238 Query 561 TGCAGGGAACCACGAGATAGATTAC 585 || ||||| || || ||||| ||| Sbjct 1042239 AGCTGGGAATCATGAAATAGAGTAC 1042263 Score = 41.0 bits (44), Expect = 0.31 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1016 GCTCCGGTTTACATAACCATTGGAGATGGAGGCAA 1050 ||||| || |||||||| ||||||||||||| || Sbjct 1044454 GCTCCAGTGTACATAACTGTTGGAGATGGAGGAAA 1044488 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 71.6 bits (78), Expect = 2e-10 Identities = 81/109 (74%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 608 AACCCTTTAAACCGTACAAGAACCGTTACCATGTTCCGTATAGAGCCTCACAGAGTACAT 667 |||| || || || |||| ||||| ||| | || |||| ||| || ||||||| Sbjct 276086 AACCTTTCAAGCCTTACACTTGTCGTTATCATATGCCTTATAAAGCTTCCAAGAGTACTG 276145 Query 668 CTCCACTTTGGTACTCAATCAAACGAGCCTCGGCTTACATCATCATACT 716 |||| ||||||| |||||||| |||| || ||||||||||| |||| Sbjct 276146 CTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATACTACT 276194 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 50.0 bits (54), Expect = 6e-04 Identities = 38/45 (84%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 901 CAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCG 945 ||| || ||||| || ||||||||||||||||||| ||||| || Sbjct 36165907 CAATGTGGATATAGTACTTGCTGGTCATGTTCATGCTTACGAACG 36165863 Score = 48.2 bits (52), Expect = 0.002 Identities = 31/34 (91%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 1026 ACATAACCATTGGAGATGGAGGCAACATAGAAGG 1059 ||||||||||||| |||||||| |||| |||||| Sbjct 36165739 ACATAACCATTGGTGATGGAGGAAACAGAGAAGG 36165706 Score = 37.4 bits (40), Expect = 3.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 159 TGATGGTAGTGATAATAAGAGTGTT 183 ||| |||||||||||||| |||||| Sbjct 296560 TGAGGGTAGTGATAATAATAGTGTT 296536 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 42.8 bits (46), Expect = 0.088 Identities = 34/41 (83%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 905 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCG 945 |||||| | || |||||||| ||||||||||| || || || Sbjct 1123458 GTCGATTTGGTTTTTGCTGGACATGTTCATGCATATGAACG 1123418 Score = 37.4 bits (40), Expect = 3.8 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 905 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGAT 947 ||||| | || ||||| || ||||||||||| || || |||| Sbjct 1111667 GTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGAACGAT 1111625 Score = 37.4 bits (40), Expect = 3.8 Identities = 35/45 (78%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1015 TGCTCCGGTTTACATAACCATTGGAGATGGAGGCAACATAGAAGG 1059 || |||||| | || |||||||||||||| || ||| ||||| Sbjct 1133721 TGGTCCGGTGCATATCACCATTGGAGATGGTGGGAACCGCGAAGG 1133765 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 3.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1213 TTGGTTGAAAAATAGATACTACTTG 1237 ||||||||||||| |||||| |||| Sbjct 6122136 TTGGTTGAAAAATTGATACTTCTTG 6122112 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 3.8 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1012 AAATGCTCCGGTTTACATAACCATTGGAGATGG 1044 ||||| || |||||| | || |||||||||||| Sbjct 18078909 AAATGGTCAGGTTTAGAGAAGCATTGGAGATGG 18078877 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 37.4 bits (40), Expect = 3.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 603 GACTCAACCCTTTAAACCGTACAAG 627 ||||||||||||| |||| |||||| Sbjct 17101937 GACTCAACCCTTTGAACCCTACAAG 17101913 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 3.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 708 CATCATACTCTCCTCTTTATGACAAGTA 735 |||||| |||||||||||||| ||| || Sbjct 19947751 CATCATCCTCTCCTCTTTATGCCAACTA 19947778 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 37.4 bits (40), Expect = 3.8 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1131 TTTTGGAAATAAAAAACAGGACC 1153 |||||||||||||||||| |||| Sbjct 34255912 TTTTGGAAATAAAAAACAAGACC 34255934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660851707176 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2