BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=1768 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm4D 201 2e-49 lcl|Jm3S 152 9e-35 lcl|Jm3D 150 3e-34 lcl|Jm8S 140 6e-31 lcl|Jm7S 105 1e-20 lcl|Jm4S 78.8 2e-12 lcl|Jm5D 48.2 0.003 lcl|Jm6D 46.4 0.010 lcl|Jm5S 41.0 0.43 lcl|Jm2S 41.0 0.43 lcl|Jm1D 41.0 0.43 lcl|Jm8D 39.2 1.5 lcl|Jm7D 39.2 1.5 lcl|Jm1S 39.2 1.5 lcl|Jm6S 37.4 5.2 lcl|Jm2D 37.4 5.2 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 201 bits (222), Expect = 2e-49 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 1048 GGGATATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACA 1107 |||| |||||| || |||||||||||||| | |||||| | | ||||||| | || Sbjct 27873767 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTGAACAGGACT 27873826 Query 1108 GAGACGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCAT 1167 |||||||| |||||||| || || ||||| |||| | || ||||| ||||| |||||| Sbjct 27873827 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 27873886 Query 1168 TACATGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTT 1227 || |||||||| ||||| ||||||| || || || ||||||||||| | || || ||| Sbjct 27873887 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 27873946 Query 1228 GATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATCGGAACGTG 1276 |||||||| ||||| |||||||||||||||||||| |||| | | ||| Sbjct 27873947 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATCTGTAAGTG 27873995 Score = 163 bits (180), Expect = 5e-38 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 679 GGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAGCCATTATGAGATGAATCCG 738 || ||||| || |||||| |||| |||||||| || | | ||||||||| | || || Sbjct 27872657 GGTGATCTTGGTCAAACTCATGATTCAAATAGGACACTCACCCATTATGAATTAAACCCA 27872716 Query 739 GGAAAAGGACAAGCGGTTCTGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAAC 798 |||||| || ||| |||| || |||||| | ||||| || ||| ||| || Sbjct 27872717 ACAAAAGGCCAGATGGTATTGTTCGTTGGAGACCTCTCTTATGCAGATGACTATCCATTG 27872776 Query 799 CACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAA 858 || |||||||| || |||||||| |||||||||||| | ||| ||| || |||||||||| Sbjct 27872777 CATGACAACAACAGGTGGGATACATGGGGAAGGTTCATAGAGAGAAATGCTGCTTATCAA 27872836 Query 859 CCTTGGATATGGACTGCTGGCAACCACGAAATCGA 893 |||||| |||||||||| ||||| || || ||||| Sbjct 27872837 CCTTGGGTATGGACTGCAGGCAATCATGAGATCGA 27872871 Score = 100 bits (110), Expect = 5e-19 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTT-ACAAGGAGTGAATCGAACAGAGA 1111 |||||| |||||||||| ||||| || ||||| | || | ||| |||||| | || | Sbjct 7641601 ATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAA-AGTTAATCGAGCTGAAA 7641659 Query 1112 CGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACA 1171 | |||||||||||||| | | || || | || | ||| | | |||| | Sbjct 7641660 CTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTTTA 7641719 Query 1172 TGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATG 1231 ||||||| |||| ||||||| | ||| |||||||| || ||| ||||| Sbjct 7641720 TGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGACA 7641779 Query 1232 TTGTGTTTGCAGGTCATGTTCATGCCTATGAG 1263 |||||||||| ||||||||||||||||||||| Sbjct 7641780 TTGTGTTTGCCGGTCATGTTCATGCCTATGAG 7641811 Score = 82.4 bits (90), Expect = 1e-13 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 758 TGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAACCACGACAACAATAGATGGG 817 |||||| || || | ||||| || ||| |||| | || ||||| | ||||||| Sbjct 7639873 TGTTTGCGGGTGATCTTTCTTATGCAGATGATCACCCATATCATGACAATGAGAGATGGG 7639932 Query 818 ATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTG 877 | || ||||| |||| ||||| |||| ||| ||||| || ||||| |||||||||| Sbjct 7639933 ACACATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTG 7639992 Query 878 GCAACCACGAAATCGACTTCGTTCCTGACATTG 910 |||| || ||| | || || | || || |||| Sbjct 7639993 GCAATCATGAACTTGATTTTGCCCCAGAAATTG 7640025 Score = 71.6 bits (78), Expect = 3e-10 Identities = 98/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1402 CCACAACCAAAATACTCCGCGTTTCGAGAAGCTAGCTTTGGGCACGGGTTGCTAGAGATT 1461 |||||||||| || || || || || ||||| ||||||||||| | || | || Sbjct 7642174 CCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGCAACTCTCGCTATA 7642233 Query 1462 AAAAACAGAACTCATGCTTACTTCAGCTGGAATCGGAACCAAGATGGGAACGCCGTGGCA 1521 || || || || ||||| ||| | ||| | || ||||||||| | || || || ||| Sbjct 7642234 AAGAATAGGACCCATGCCCACTATACTTGGCACCGTAACCAAGATAGTAATGCTGTTGCA 7642293 Query 1522 GCAGATTCTGTGTGGTT 1538 || |||||| | ||||| Sbjct 7642294 GCTGATTCTCTTTGGTT 7642310 Score = 53.6 bits (58), Expect = 7e-05 Identities = 137/207 (66%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 365 AGGTTCATGTAACGCAAGGGAACCATGAAGGTAATGGAGTGATCATTTCTTGGGTGACTC 424 |||| ||| |||| ||||| | |||||||| || || ||||| | |||||||| || Sbjct 27871927 AGGTGCATATAACTCAAGGAGATCATGAAGGAAAGGGTGTGATTGTCTCTTGGGTTACAG 27871986 Query 425 CGGTTAAGCCCGGTTCTAAGACTGTTCAATATTGGTGTGAGAATGAGAAATCGAGGAAAC 484 | | | | |||||||| | || || | || ||| ||| ||| | | || || Sbjct 27871987 CAGATGAACCCGGTTCAAGTACAGTGCTTTACTGGGCTGAAAAT-----AGCCAGCTAAA 27872041 Query 485 AAGCAGAAGCAACAGTTA-ATACTTACCG----GTTCTTTAATTACACGTCTGGTTATAT 539 |||| | | ||| |||| |||| || | |||||||| || |||||||| Sbjct 27872042 AAGCCGGGCTGATGGTTTTATACGTACCTACAAGTATGTCAATTACACCTCCGGTTATAT 27872101 Query 540 TCACCATTGCCTCATCGATGATTTGGA 566 ||| || ||| ||| | ||||||| Sbjct 27872102 TCATCACTGCACCATTAACAATTTGGA 27872128 Score = 48.2 bits (52), Expect = 0.003 Identities = 77/111 (69%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 570 TGATACGAAATACTACTACGAAATTGGGAGTGGCAAGTGGTCCAGACGGTTCTGGTTCTT 629 ||| || ||||||| || || ||||||| |||| ||| || | | |||| ||| Sbjct 7639567 TGACACTAAATACTTTTATGAGATTGGGATTGGCGTGTGTGCCCGTCTGTTCCATTTCAG 7639626 Query 630 TATCCCGCCTAAATCAGGCCCTGACGTACCTTACACATTTGGATTAATTGG 680 | || || ||| ||| || || || || ||||||||||| | ||||| Sbjct 7639627 AACTCCTCCCAAAGTAGGGCCAGATGTTCCATACACATTTGGTATTATTGG 7639677 Score = 48.2 bits (52), Expect = 0.003 Identities = 89/131 (68%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 922 CCATTCAAGCCTTTTATGAATCGGTATCATACGCCACATAAGGCATCAGGAAGTATCTCT 981 || |||||||| | |||||| | || || ||| | | |||| ||||| || Sbjct 7641325 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAAAGTACATCC 7641384 Query 982 CCATTGTGGTATTCCATCAAAAGGGCGTCAGCTTATATTATTGTTATGTCATGTTACTCA 1041 ||| | ||||||||||| || | || || || | || ||||| | || | ||||||| Sbjct 7641385 CCACTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 7641444 Query 1042 TCTTATGGGAT 1052 | ||||| || Sbjct 7641445 GCATATGGTAT 7641455 Score = 37.4 bits (40), Expect = 5.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1232 TTGTGTTTGCAGGTCATGTTCAT 1254 ||||||| ||||||||||||||| Sbjct 18396723 TTGTGTTCGCAGGTCATGTTCAT 18396745 Score = 37.4 bits (40), Expect = 5.2 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 1691 CCTCTCATACAGAAAAAAGTTTGTTATTACCATA 1724 ||| ||||| ||||||||||||| || |||||| Sbjct 24344962 CCTGTCATATAGAAAAAAGTTTG--ATAACCATA 24344993 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 152 bits (168), Expect = 9e-35 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 679 GGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAGCCATTATGAGATGAATCCG 738 |||||||| || || | || ||| ||||| || ||| | | ||||| ||| | || || Sbjct 24070067 GGGGATCTTGGTCAGAGTTTTGATTCAAACAGGACGCTTACTCATTACGAGTTAAACCCA 24070126 Query 739 GGAAAAGGACAAGCGGTTCTGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAAC 798 ||||| || |||| ||||||| || ||| | ||||| || || ||| || || Sbjct 24070127 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGACCTCTCTTATGCAGACAACTATCCAAAT 24070186 Query 799 CACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAA 858 || ||||| |||||||||||| |||||||||||| | ||| |||||||||| |||||| Sbjct 24070187 CATGACAATGTTAGATGGGATACATGGGGAAGGTTCATCGAGAGAAGTGTTGCATATCAA 24070246 Query 859 CCTTGGATATGGACTGCTGGCAACCACGA 887 || |||||||||||||| || || ||||| Sbjct 24070247 CCATGGATATGGACTGCAGGGAATCACGA 24070275 Score = 141 bits (156), Expect = 2e-31 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGAGAC 1112 ||| || |||||||||| |||||| ||| |||| ||| ||| ||| | || ||||| Sbjct 24071718 ATATACGCCTCAATACACATGGCTTGAAGAGGAACTACCGAAAGTTAATAGGACCGAGAC 24071777 Query 1113 GCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACAT 1172 || ||||| || || | |||| ||| | || | ||||||| ||||||| || Sbjct 24071778 ACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCATTATAT 24071837 Query 1173 GGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATGT 1232 ||| || ||||| ||||||| |||| || |||||||| || ||||| |||||||| Sbjct 24071838 GGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTACAAAGTTGATGT 24071897 Query 1233 TGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATC 1268 || ||||| |||||||||||||| |||||| |||| Sbjct 24071898 GGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24071933 Score = 37.4 bits (40), Expect = 5.2 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 35 TATCCACTTGCGATCCTTTCTTGGaaaaaaaaaaaaaa 72 ||||||||||| ||||| || ||||||||||||| Sbjct 2503492 TATCCACTTGCCCCGTTTTCTAGGGAAAAAAAAAAAAA 2503455 Score = 37.4 bits (40), Expect = 5.2 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 124 AAAAAGAAAATATAAAGCACGTTCTTCGTCTC 155 |||||||||||||||| || || |||||||| Sbjct 3554472 AAAAAGAAAATATAAA-CATTTTTTTCGTCTC 3554442 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 150 bits (166), Expect = 3e-34 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGAGAC 1112 |||||| ||||||||| ||||||| ||| |||| || | | ||| || | || ||||| Sbjct 5459444 ATACACCCCTCAATACCAATGGCTTGAACAGGAATTGCCAAAAGTTAACAGGACTGAGAC 5459385 Query 1113 GCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACAT 1172 || ||| | || || || ||||| ||| | || | |||||| ||||||| || Sbjct 5459384 ACCTTGGTTGATTGTTCTAATGCATTCCCCCTGGTATAATAGCTACAACTATCATTATAT 5459325 Query 1173 GGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATGT 1232 ||| || ||||| ||||||| ||||| || ||||||||| || ||||| |||||||| Sbjct 5459324 GGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTTGTGAAGTACAAAGTTGATGT 5459265 Query 1233 TGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATC 1268 || ||||||||||||||||| || ||||| |||| Sbjct 5459264 GGTATTTGCAGGTCATGTTCACGCTTATGAACGATC 5459229 Score = 136 bits (150), Expect = 7e-30 Identities = 154/209 (74%), Gaps = 12/209 (6%) Strand=Plus/Minus Query 679 GGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAGCCATTATGAGATGAATCCG 738 |||||||| || || | || ||| ||||| | || | | ||||| ||| | || ||| Sbjct 5460282 GGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACTCTTACTCATTACGAGTTAAACCCG 5460223 Query 739 GGAAAAGGACAAGCGGTTCTGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAAC 798 ||||| || |||| ||||||| || || | |||||||| ||| Sbjct 5460222 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGATCTTTCTTACGCAGATA----------- 5460174 Query 799 CACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAA 858 | ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 5460173 -ATGACAATGTTAGATGGGATACATGGGGAAGGTTCGTTGAGAGAAGTGTTGCTTATCAA 5460115 Query 859 CCTTGGATATGGACTGCTGGCAACCACGA 887 || |||||||||||||| || || ||||| Sbjct 5460114 CCATGGATATGGACTGCAGGGAATCACGA 5460086 Score = 66.2 bits (72), Expect = 1e-08 Identities = 63/81 (78%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1456 GAGATTAAAAACAGAACTCATGCTTACTTCAGCTGGAATCGGAACCAAGATGGGAACGCC 1515 || || || ||| |||| ||||||||||| ||| | || || |||||||| |||| Sbjct 5458023 GATATCAAGAACCGAACCCATGCTTACTTTGCTTGGCACCGCAATCAAGATGGATACGCA 5458082 Query 1516 GTGGCAGCAGATTCTGTGTGG 1536 ||| ||||||||||||| ||| Sbjct 5458083 GTGACAGCAGATTCTGTATGG 5458103 Score = 50.0 bits (54), Expect = 8e-04 Identities = 72/99 (73%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 574 ACGAAATACTACTACGAAATTGGGAGTGGCAAGTGGTCCA-GACGGTTCTGGTTCTTTAT 632 || ||||||||||||| |||||| ||| | |||| | | ||||||||| | | Sbjct 5460753 ACCAAATACTACTACGTGGTTGGGATTGGGCA-CACTCCACGGCAGTTCTGGTTTATAAC 5460695 Query 633 CCCGCCTAAATCAGGCCCTGACGTACCTTACACATTTGG 671 || ||| || |||||||| || ||||| |||||||| Sbjct 5460694 TCCCCCTGAAGTTGGCCCTGATGTGCCTTATACATTTGG 5460656 Score = 44.6 bits (48), Expect = 0.035 Identities = 45/59 (76%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 310 ATGCCACTAGACAGCGATGTTTTTGAAGTTCCTCCTGGTCCTAATTCACCTCAACAGGT 368 ||||| || || |||||||| ||| | | || || || |||| ||||||||||||| Sbjct 5461479 ATGCCTCTGGATAGCGATGTCTTTCGAATCCCACCCGGCTATAATGCACCTCAACAGGT 5461421 Score = 39.2 bits (42), Expect = 1.5 Identities = 38/48 (79%), Gaps = 2/48 (4%) Strand=Plus/Minus Query 1705 AAAAGTTTGTTATTACCATAAGTGGTTTTGCACCTAT--ACAAGTTAA 1750 ||||||||| || | ||| || ||||||||||||| | ||||||| Sbjct 19247907 AAAAGTTTGGTAATTAAATATGTTGTTTTGCACCTATTAAAAAGTTAA 19247860 Score = 39.2 bits (42), Expect = 1.5 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 64 aaaaaaaaaaTCATATGATTG 84 ||||||||||||||||||||| Sbjct 24730042 AAAAAAAAAATCATATGATTG 24730062 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 140 bits (154), Expect = 6e-31 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGAGAC 1112 ||| |||||||||||||||||||| || |||| ||| ||| ||| | || ||||| Sbjct 356861 ATATACACCTCAATACAAATGGCTCAAAGAGGAACTACCGAAAGTTAATAGGACCGAGAC 356920 Query 1113 GCCATGGCTTATAG-TCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACA 1171 || ||| | || | ||||| ||||| ||| | || | ||||||| ||||||| | Sbjct 356921 ACCTTGGTTGATTGTTCTTA-TGCATTCCCCTTGGTATAATAGCTATAACTATCATTATA 356979 Query 1172 TGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATG 1231 |||| || ||| | ||||||| |||| || |||||||| || ||||| ||||||| Sbjct 356980 TGGAGGGGGAAGCCATGAGAGTAATGTTTGAGGCTTGGTTTGTGAAGTACAAAGTTGATG 357039 Query 1232 TTGTGTTTGCAGGTCATGTTCATGCCTAT 1260 |||| ||||| |||||||||||||| ||| Sbjct 357040 TTGTATTTGCTGGTCATGTTCATGCTTAT 357068 Score = 109 bits (120), Expect = 1e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 789 CTACCCTAACCACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGT 848 ||| || || || ||||| |||||||||||| |||| ||||||||| ||| ||||||| Sbjct 355278 CTATCCCAATCATGACAATGTTAGATGGGATACATGGGAAAGGTTCGTCGAGAGAAGTGT 355337 Query 849 TGCTTATCAACCTTGGATATGGACTGCTGGCAACCACGAAATCGACTTCG 898 |||||| ||||| |||||||||||||| || || ||||| | || |||| Sbjct 355338 TGCTTAACAACCATGGATATGGACTGCAGGTAATCACGAGTTAGATTTCG 355387 Score = 37.4 bits (40), Expect = 5.2 Identities = 36/44 (82%), Gaps = 3/44 (7%) Strand=Plus/Minus Query 1577 TTGATGCATTTTAAAGACAAATTGAAGAAGGTTTTATTTTTGCA 1620 ||||||||||||| |||| ||||| | || ||| || |||||| Sbjct 3015432 TTGATGCATTTTATAGAC-AATTGGATAA--TTTGATGTTTGCA 3015392 Score = 37.4 bits (40), Expect = 5.2 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 110 TCATTTAATTTCC-CAAAAAGAAAATATAAAG 140 ||||||||||||| |||||||||| | |||| Sbjct 17802247 TCATTTAATTTCCGAAAAAAGAAAAAAAAAAG 17802216 >Query1 on lcl|Jm7S| Query1 on lcl|Jm7S Length=21889424 Score = 105 bits (116), Expect = 1e-20 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTT-ACAAGGAGTGAATCGAACAGAGA 1111 |||||| |||||||||| ||||| |||||||| | || | ||| |||||| | || | Sbjct 18698318 ATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAA-AGTTAATCGAGCTGAAA 18698376 Query 1112 CGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACA 1171 | || ||||||||||| | | || || | || | ||| | | ||||| | Sbjct 18698377 CTCCTTGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTATA 18698436 Query 1172 TGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATG 1231 ||||||| |||| ||||||| | | ||| |||||||| || ||| ||||| Sbjct 18698437 TGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGACA 18698496 Query 1232 TTGTGTTTGCAGGTCATGTTCATGCCTATGAG 1263 |||| ||||| ||||||||||||||||||||| Sbjct 18698497 TTGTTTTTGCTGGTCATGTTCATGCCTATGAG 18698528 Score = 93.3 bits (102), Expect = 8e-17 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 758 TGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAACCACGACAACAATAGATGGG 817 |||||||||| || | ||||| || ||| |||| ||||| ||||| | ||||||| Sbjct 18697641 TGTTTGTAGGTGATCTTTCTTATGCAGATGATCACCCAAACCATGACAATGAGAGATGGG 18697700 Query 818 ATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTG 877 | || ||||| | || ||||| |||| ||| ||||| || ||||| |||||||||| Sbjct 18697701 ACACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTG 18697760 Query 878 GCAACCACGAA 888 |||| || ||| Sbjct 18697761 GCAATCATGAA 18697771 Score = 73.4 bits (80), Expect = 7e-11 Identities = 97/135 (72%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1402 CCACAACCAAAATACTCCGCGTTTCGAGAAGCTAGCTTTGGGCACGGGTTGCTAGAGATT 1461 |||||||||| || || || || || ||||| ||||||||||||| | || | || Sbjct 18698984 CCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCACGCAATTCTGGCTATA 18699043 Query 1462 AAAAACAGAACTCATGCTTACTTCAGCTGGAATCGGAACCAAGATGGGAACGCCGTGGCA 1521 || || || || ||||| ||| | ||| | || ||||||||| | || || || || Sbjct 18699044 AAGAATAGGACCCATGCCCACTATACTTGGCACCGCAACCAAGATAGTAATGCTGTTGCT 18699103 Query 1522 GCAGATTCTGTGTGG 1536 || |||||| | ||| Sbjct 18699104 GCTGATTCTCTTTGG 18699118 Score = 48.2 bits (52), Expect = 0.003 Identities = 89/131 (68%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 922 CCATTCAAGCCTTTTATGAATCGGTATCATACGCCACATAAGGCATCAGGAAGTATCTCT 981 || |||||||| | |||||| | || || ||| | | |||| |||| || Sbjct 18698093 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAGAGTACATCC 18698152 Query 982 CCATTGTGGTATTCCATCAAAAGGGCGTCAGCTTATATTATTGTTATGTCATGTTACTCA 1041 ||| | |||||||||||||| | || || || | || ||||| | || | ||||||| Sbjct 18698153 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 18698212 Query 1042 TCTTATGGGAT 1052 | ||||| || Sbjct 18698213 GCATATGGTAT 18698223 Score = 42.8 bits (46), Expect = 0.12 Identities = 76/111 (68%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 570 TGATACGAAATACTACTACGAAATTGGGAGTGGCAAGTGGTCCAGACGGTTCTGGTTCTT 629 ||| || ||||||| || || || |||| |||| |||| || | | |||| ||| Sbjct 18697058 TGACACCAAATACTTTTATGAGATCGGGATTGGCGAGTGTGCCCGTCAGTTCCACTTCAG 18697117 Query 630 TATCCCGCCTAAATCAGGCCCTGACGTACCTTACACATTTGGATTAATTGG 680 | || || ||| || || || || || ||||||||||| | ||||| Sbjct 18697118 AACTCCTCCCAAAGTGGGGCCAGATGTTCCATACACATTTGGCATTATTGG 18697168 Score = 39.2 bits (42), Expect = 1.5 Identities = 37/46 (80%), Gaps = 1/46 (2%) Strand=Plus/Minus Query 52 TTCTTGGaaaaaaaaaaaaaaaTCATATGATTGTGTCTGGCCAGAC 97 |||||| | | || | ||||||||| | ||||| ||||||||||| Sbjct 21032058 TTCTTGTATATAATATAAAAAATCAGTT-ATTGTCTCTGGCCAGAC 21032014 Score = 37.4 bits (40), Expect = 5.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1058 CACCTCAATACAAATGGCTGGAAAAGGAGTTAC 1090 |||| | ||| || ||| ||||||||||||||| Sbjct 7339766 CACCACCATAGAACTGGTTGGAAAAGGAGTTAC 7339734 Score = 37.4 bits (40), Expect = 5.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1173 GGAAGGTGAAACATTGAGAG 1192 |||||||||||||||||||| Sbjct 10736917 GGAAGGTGAAACATTGAGAG 10736898 Score = 37.4 bits (40), Expect = 5.2 Identities = 31/36 (86%), Gaps = 3/36 (8%) Strand=Plus/Minus Query 1570 ACATGGCTTGA-TGCATTTTAAAGACAAATTGAAGA 1604 |||||| || | ||| ||||||||||||||||||| Sbjct 14481942 ACATGGTTTAAATGC--TTTAAAGACAAATTGAAGA 14481909 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 78.8 bits (86), Expect = 2e-12 Identities = 152/222 (68%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 1050 GATATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGA 1109 || ||| |||| ||||| | |||||| || | || || || ||||| || | | | Sbjct 1014109 GAAATATACACTTCAATGGAGGTGGCTGCAAGAAGAACTAAAAAGAGTGGATAGGAGGAA 1014168 Query 1110 GACGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTA-TGTGCATCATT 1168 ||| || |||||||| | | | ||| || | |||||||| | | || || | Sbjct 1014169 GACACCTTGGCTTATTATTCTCCTTCATGTACCCATCTACAGTAGTAACTCAGCC-CACT 1014227 Query 1169 ACATGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTG 1228 | ||||||||||||| || ||| | | || |||||||||| || | |||| Sbjct 1014228 ATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGAGTTG 1014287 Query 1229 ATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATCGG 1270 || | || ||||| || || |||||||||||||| ||||||| Sbjct 1014288 ATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATCGG 1014329 Score = 62.6 bits (68), Expect = 1e-07 Identities = 63/82 (77%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 812 GATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGA 871 |||||||| | ||||| | || ||||||||||| ||| ||||| || ||||| ||| Sbjct 1012888 GATGGGATGCATGGGGCCGTTTTATTGAGCGAAGTACTGCATATCAGCCATGGATTTGGT 1012947 Query 872 CTGCTGGCAACCACGAAATCGA 893 | ||||| || || ||||| || Sbjct 1012948 CAGCTGGGAATCATGAAATAGA 1012969 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 48.2 bits (52), Expect = 0.003 Identities = 34/39 (87%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1225 GTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAG 1263 || |||||||| ||||| || ||||| |||||||||||| Sbjct 1187023 GTGGATGTTGTTTTTGCCGGACATGTACATGCCTATGAG 1187061 Score = 44.6 bits (48), Expect = 0.035 Identities = 33/39 (85%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 1224 GGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGA 1262 ||| || || || |||||||| ||||||||||| ||||| Sbjct 1164143 GGTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGA 1164105 Score = 44.6 bits (48), Expect = 0.035 Identities = 33/39 (85%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 1224 GGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGA 1262 ||| ||||| || ||||| || ||||||||||| ||||| Sbjct 1175172 GGTCGATGTGGTTTTTGCTGGACATGTTCATGCATATGA 1175134 Score = 39.2 bits (42), Expect = 1.5 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 925 TTCAAGCCTTTTATGAATCGG 945 ||||||||||||||||||||| Sbjct 1448570 TTCAAGCCTTTTATGAATCGG 1448590 Score = 37.4 bits (40), Expect = 5.2 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 162 AGAGAAACTAATCTTGAAGATGAGTTCAAGATCTGACCTC 201 ||||||| |||| ||||||||||| || | || ||||| Sbjct 14695108 AGAGAAAATAATAATGAAGATGAGTGTAAAAGCTAACCTC 14695147 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 46.4 bits (50), Expect = 0.010 Identities = 42/52 (81%), Gaps = 2/52 (4%) Strand=Plus/Plus Query 1608 TTTTATTTTTGCAGCAATTCTAAACGAATAAATCAGTTAGTGA--CTGTTTT 1657 |||||||||||| |||| ||||||||| || ||||| ||| ||||||| Sbjct 36986990 TTTTATTTTTGCTATAATTTTAAACGAATTAAAGAGTTATTGATGCTGTTTT 36987041 Score = 37.4 bits (40), Expect = 5.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 118 TTTCCCAAAAAGAAAATATAAAGCA 142 |||||| ||||| |||||||||||| Sbjct 8878010 TTTCCCTAAAAGTAAATATAAAGCA 8877986 Score = 37.4 bits (40), Expect = 5.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 117 ATTTCCCAAAAAGAAAATATAAA 139 ||||||||||||||||| ||||| Sbjct 36078956 ATTTCCCAAAAAGAAAAAATAAA 36078934 >Query1 on lcl|Jm5S| Query1 on lcl|Jm5S Length=32113326 Score = 41.0 bits (44), Expect = 0.43 Identities = 33/38 (87%), Gaps = 3/38 (8%) Strand=Plus/Plus Query 1570 ACATGGCTTGA-TGCATTTTAAAGACAAATTGAAGAAG 1606 |||||| |||| ||| ||||||| ||||||||||||| Sbjct 21046938 ACATGGTTTGAATGC--TTTAAAGCCAAATTGAAGAAG 21046973 Score = 39.2 bits (42), Expect = 1.5 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1023 TGTTATGTCATGTTACTCATCTTATG 1048 ||||||||||||||| |||||| ||| Sbjct 23741294 TGTTATGTCATGTTATTCATCTCATG 23741269 Score = 37.4 bits (40), Expect = 5.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1173 GGAAGGTGAAACATTGAGAG 1192 |||||||||||||||||||| Sbjct 3057928 GGAAGGTGAAACATTGAGAG 3057909 Score = 37.4 bits (40), Expect = 5.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1598 TTGAAGAAGGTTTTATTTTT 1617 |||||||||||||||||||| Sbjct 7326976 TTGAAGAAGGTTTTATTTTT 7326995 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 41.0 bits (44), Expect = 0.43 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1693 TCTCATACAGAAAAAAGTTTGTTATTACCA 1722 ||| ||||||||| ||||||||||||||| Sbjct 16186256 TCTGATACAGAAATTAGTTTGTTATTACCA 16186285 Score = 39.2 bits (42), Expect = 1.5 Identities = 33/41 (80%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 1 AAAGGTTGATTaaaaataaaataaaaaTTTGGAATATCCAC 41 |||||||||||||||| |||| | ||||||| | | ||| Sbjct 27110625 AAAGGTTGATTAAAAAAAAAAAATTGATTTGGATTTTTCAC 27110585 Score = 37.4 bits (40), Expect = 5.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1617 TGCAGCAATTCTAAACGAATAAATC 1641 |||||||||||||||| ||||| || Sbjct 16749474 TGCAGCAATTCTAAACAAATAAGTC 16749498 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 41.0 bits (44), Expect = 0.43 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 515 TCTTTAATTACACGTCTGGTTATATTCACCAT 546 |||| ||||||||||||||| ||||||||| Sbjct 17153013 TCTTGAATTACACGTCTGGTATCATTCACCAT 17152982 Score = 39.2 bits (42), Expect = 1.5 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 96 ACAAGCTAGCTATCTCATTTAATTTCCCAAAAA 128 |||||| ||||||||||||| ||| ||||||| Sbjct 6507853 ACAAGCG-GCTATCTCATTTACTTTGCCAAAAA 6507822 Score = 37.4 bits (40), Expect = 5.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1173 GGAAGGTGAAACATTGAGAG 1192 |||||||||||||||||||| Sbjct 6685333 GGAAGGTGAAACATTGAGAG 6685314 Score = 37.4 bits (40), Expect = 5.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1584 ATTTTAAAGACAAATTGAAGAAGGTTTTAT 1613 ||||| |||||||||||||||| ||| || Sbjct 14382063 ATTTTTAAGACAAATTGAAGAATATTTAAT 14382034 Score = 37.4 bits (40), Expect = 5.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 115 TAATTTCCCAAAAAGAAAATATAAA 139 || || ||||||||||||||||||| Sbjct 14725172 TATTTCCCCAAAAAGAAAATATAAA 14725196 Score = 37.4 bits (40), Expect = 5.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 550 CTCATCGATGATTTGGAATTTGATA 574 |||||| ||||||||||| |||||| Sbjct 21803350 CTCATCAATGATTTGGAAGTTGATA 21803374 >Query1 on lcl|Jm8D| Query1 on lcl|Jm8D Length=36225362 Score = 39.2 bits (42), Expect = 1.5 Identities = 33/40 (83%), Gaps = 2/40 (5%) Strand=Plus/Minus Query 1608 TTTTATTTTTGCAGCAATTCTAAACGAAT--AAATCAGTT 1645 ||||| ||||| | ||||||||||||| | |||| |||| Sbjct 2564148 TTTTAATTTTGAATCAATTCTAAACGAGTCAAAATGAGTT 2564109 Score = 37.4 bits (40), Expect = 5.2 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 258 CTATGGAGGGTTCACAAGTGAATATGTCAGAG 289 || |||| ||| ||||||||||||||||| || Sbjct 15355750 CTCTGGAAGGT-CACAAGTGAATATGTCACAG 15355720 Score = 37.4 bits (40), Expect = 5.2 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 61 aaaaaaaaaaaaaTCATATGATTG-TGTCTGG 91 |||||| ||| || |||||||||| ||||||| Sbjct 21541498 AAAAAACAAATAAGCATATGATTGTTGTCTGG 21541529 Score = 37.4 bits (40), Expect = 5.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 16 ataaaataaaaaTTTGGAATATCCACTTGC 45 ||| || | |||||||||||||||||| || Sbjct 29039667 ATACAAAATAAATTTGGAATATCCACTGGC 29039638 >Query1 on lcl|Jm7D| Query1 on lcl|Jm7D Length=26765518 Score = 39.2 bits (42), Expect = 1.5 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 108 TCTCATTTAATTTCCCAAAAAGAAAA 133 ||||| ||||||||||||||| |||| Sbjct 23009570 TCTCACTTAATTTCCCAAAAAAAAAA 23009545 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 39.2 bits (42), Expect = 1.5 Identities = 46/60 (77%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 14 aaataaaataaaaaTTTGGAATATCCACTTGCGATCCTTTCTTGGaaaaaaaaaaaaaaa 73 |||| ||||||| ||||||||||| | | | | ||| || ||||||||||||||| Sbjct 28965432 AAATTTAATAAAA-TTTGGAATATCATCCT-CTTTTTTTTTTTTAAAAAAAAAAAAAAAA 28965489 >Query1 on lcl|Jm6S| Query1 on lcl|Jm6S Length=22373256 Score = 37.4 bits (40), Expect = 5.2 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 1225 GTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATG 1261 || |||||||||||| || ||| ||||||| ||||| Sbjct 5692862 GTCGATGTTGTGTTTCAAGTTCACGTTCATG-CTATG 5692897 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 37.4 bits (40), Expect = 5.2 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 11 TaaaaataaaataaaaaTTTGGAATATCCACTTGC 45 ||| ||||||||||| | | ||||||||||||| Sbjct 9426800 TAATAATAAAATAAAGAATAATAATATCCACTTGC 9426834 Score = 37.4 bits (40), Expect = 5.2 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 116 AATTTCCCAAAAAGAAAATATAAAGCAC 143 ||||||||||||| |||| | ||||||| Sbjct 16088318 AATTTCCCAAAAAAAAAAAAAAAAGCAC 16088345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916418479144 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2