BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1768 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 196 9e-48 lcl|Jr3D 170 4e-40 lcl|Jr3S 158 2e-36 lcl|Jr7S 109 1e-21 lcl|Jr4S 87.8 3e-15 lcl|Jr8S 55.4 2e-05 lcl|Jr7D 48.2 0.003 lcl|Jr5D 48.2 0.003 lcl|Jr6D 41.0 0.43 lcl|Jr1D 41.0 0.43 lcl|Jr8D 39.2 1.5 lcl|Jr2S 39.2 1.5 lcl|Jr2D 39.2 1.5 lcl|Jr5S 37.4 5.3 lcl|Jr1S 37.4 5.3 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 196 bits (216), Expect = 9e-48 Identities = 176/221 (80%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1048 GGGATATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACA 1107 |||| |||||| || |||||||||||||| | |||||| | | |||| || | || Sbjct 28097729 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACT 28097788 Query 1108 GAGACGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCAT 1167 |||||||| |||||||| || || ||||| |||| | || ||||| ||||| |||||| Sbjct 28097789 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 28097848 Query 1168 TACATGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTT 1227 || |||||||| ||||| ||||||| || || || ||||||||||| | || || ||| Sbjct 28097849 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 28097908 Query 1228 GATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATC 1268 |||||||| ||||| |||||||||||||||||||| |||| Sbjct 28097909 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 28097949 Score = 163 bits (180), Expect = 5e-38 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 679 GGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAGCCATTATGAGATGAATCCG 738 || ||||| || |||||| |||| |||||||| || | | ||||||||| | || || Sbjct 28096612 GGTGATCTTGGTCAAACTCATGATTCAAATAGGACACTCACCCATTATGAATTAAACCCA 28096671 Query 739 GGAAAAGGACAAGCGGTTCTGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAAC 798 |||||| || ||| |||| || |||||| | ||||| || ||| ||| || Sbjct 28096672 ACAAAAGGCCAGATGGTGTTGTTCGTTGGAGACCTCTCTTATGCAGATGACTATCCATTG 28096731 Query 799 CACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAA 858 || |||||||| || |||||||| |||||||||||| | ||| ||| || |||||||||| Sbjct 28096732 CATGACAACAACAGGTGGGATACATGGGGAAGGTTCATAGAGAGAAATGCTGCTTATCAA 28096791 Query 859 CCTTGGATATGGACTGCTGGCAACCACGAAATCGA 893 |||||| |||||||||| ||||| || || ||||| Sbjct 28096792 CCTTGGGTATGGACTGCAGGCAATCATGAGATCGA 28096826 Score = 96.9 bits (106), Expect = 6e-18 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTT-ACAAGGAGTGAATCGAACAGAGA 1111 |||||| |||||||||| ||||| || ||||| | || | ||| |||||| | || | Sbjct 7757937 ATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAA-AGTTAATCGAGCTGAAA 7757995 Query 1112 CGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACA 1171 | |||||||||||||| | | || || | || | ||| | | |||| | Sbjct 7757996 CTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTTTA 7758055 Query 1172 TGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATG 1231 ||||||| |||| ||||||| | ||| |||||||| || ||| ||||| Sbjct 7758056 TGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGACA 7758115 Query 1232 TTGTGTTTGCAGGTCATGTTCATGCCTATGAG 1263 ||||||| || ||||||||||||||||||||| Sbjct 7758116 TTGTGTTAGCCGGTCATGTTCATGCCTATGAG 7758147 Score = 87.8 bits (96), Expect = 3e-15 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 758 TGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAACCACGACAACAATAGATGGG 817 |||||| || || | ||||| || ||| |||| | || ||||| | ||||||| Sbjct 7756248 TGTTTGCGGGTGATCTTTCTTATGCAGATGATCACCCATATCATGACAATGAGAGATGGG 7756307 Query 818 ATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTG 877 | || ||||| |||| ||||| |||| ||| ||||| || ||||| |||||||||| Sbjct 7756308 ACACATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTG 7756367 Query 878 GCAACCACGAAATCGACTTCGTTCCTGACATTG 910 |||| || ||| | || || | ||| || |||| Sbjct 7756368 GCAATCATGAACTTGATTTTGCTCCAGAAATTG 7756400 Score = 68.0 bits (74), Expect = 3e-09 Identities = 97/137 (71%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1402 CCACAACCAAAATACTCCGCGTTTCGAGAAGCTAGCTTTGGGCACGGGTTGCTAGAGATT 1461 |||||||||| || || || || || ||||| ||||||||||| | || | || Sbjct 7758512 CCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGCAACTCTCGCTATA 7758571 Query 1462 AAAAACAGAACTCATGCTTACTTCAGCTGGAATCGGAACCAAGATGGGAACGCCGTGGCA 1521 || || || || ||||| ||| | ||| | || ||||||||| | || || || || Sbjct 7758572 AAGAATAGGACCCATGCCCACTATACTTGGCACCGTAACCAAGATAGTAATGCTGTTGCT 7758631 Query 1522 GCAGATTCTGTGTGGTT 1538 || |||||| | ||||| Sbjct 7758632 GCTGATTCTCTTTGGTT 7758648 Score = 62.6 bits (68), Expect = 1e-07 Identities = 137/203 (67%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 365 AGGTTCATGTAACGCAAGGGAACCATGAAGGTAATGGAGTGATCATTTCTTGGGTGACTC 424 |||| ||| |||| ||||| | || || || || || ||||| | |||||||| |||| Sbjct 28095876 AGGTGCATATAACTCAAGGAGATCACGAGGGAAAGGGTGTGATTGTCTCTTGGGTTACTC 28095935 Query 425 CGGTTAAGCCCGGTTCTAAGACTGTTCAATATTGGTGTGAGAATGAGAAATCGAGGAAAC 484 | | | | |||||||| | || || | || ||| ||| ||| || | | | || | Sbjct 28095936 CAGATGAACCCGGTTCAAGTACAGTGCTTTACTGGGCTGAAAAT-AGCCAGCTAAAAAGC 28095994 Query 485 AAG-CAGAAGCAACAGTTAATACTTACCGGTTCTTTAATTACACGTCTGGTTATATTCAC 543 | | || | | || ||| ||| || | |||||||| |||||||||||||| Sbjct 28095995 CGGGCTGATGGATTTATTCGTACCTACAAGTATGTCAATTACACCTCTGGTTATATTCAT 28096054 Query 544 CATTGCCTCATCGATGATTTGGA 566 || ||| ||| | ||||||| Sbjct 28096055 CACTGCACCATTAACAATTTGGA 28096077 Score = 46.4 bits (50), Expect = 0.010 Identities = 75/107 (70%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 570 TGATACGAAATACTACTACGAAATTGGGAGTGGCAAGTGGTCCAGACGGTTCTGGTTCTT 629 ||| || ||||||| || || ||||||| |||| ||| || | | |||| ||| Sbjct 7755942 TGACACTAAATACTTTTATGAGATTGGGATTGGCGTGTGTGCCCGTCTGTTCCATTTCAG 7756001 Query 630 TATCCCGCCTAAATCAGGCCCTGACGTACCTTACACATTTGG-ATTA 675 | || || ||| ||| || || || || ||||||||||| |||| Sbjct 7756002 AACTCCTCCCAAAGTAGGGCCAGATGTTCCATACACATTTGGTATTA 7756048 Score = 42.8 bits (46), Expect = 0.12 Identities = 88/131 (67%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 922 CCATTCAAGCCTTTTATGAATCGGTATCATACGCCACATAAGGCATCAGGAAGTATCTCT 981 || |||||||| | |||||| | || || ||| | | |||| ||| | || Sbjct 7757680 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAAAGCACATCC 7757739 Query 982 CCATTGTGGTATTCCATCAAAAGGGCGTCAGCTTATATTATTGTTATGTCATGTTACTCA 1041 ||| | ||||||||||| || | || || || | || ||||| | || | ||||||| Sbjct 7757740 CCACTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 7757799 Query 1042 TCTTATGGGAT 1052 | ||||| || Sbjct 7757800 GCATATGGTAT 7757810 Score = 42.8 bits (46), Expect = 0.12 Identities = 77/113 (68%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 568 TTTGATACGAAATACTACTACGAAATTGGGAGTGGCAAGTGGTCCAGACGGTTCTGGTTC 627 ||||| || ||||||||||| || | |||| ||| || | ||| ||||||||| Sbjct 28096170 TTTGACACCAAATACTACTATGAGGTCGGGATTGGGAATACCACACGACAGTTCTGGTTT 28096229 Query 628 TTTATCCCGCCTAAATCAGGCCCTGACGTACCTTACACATTTGGATTAATTGG 680 | || || | |||||||| || || || |||||||| |||| || Sbjct 28096230 AGAACTCCTCCAAGTGTTGGCCCTGATGTTCCATATACATTTGGCCTAATAGG 28096282 Score = 41.0 bits (44), Expect = 0.43 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 1 AAAGGTTGATTaaaaataaaataaaaa 27 |||||||||||||||| |||| ||||| Sbjct 16855603 AAAGGTTGATTAAAAAAAAAAAAAAAA 16855577 Score = 37.4 bits (40), Expect = 5.3 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1232 TTGTGTTTGCAGGTCATGTTCAT 1254 ||||||| ||||||||||||||| Sbjct 19084122 TTGTGTTCGCAGGTCATGTTCAT 19084144 Score = 37.4 bits (40), Expect = 5.3 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 1691 CCTCTCATACAGAAAAAAGTTTGTTATTACCATA 1724 ||| ||||| ||||||||||||| || |||||| Sbjct 24595860 CCTGTCATATAGAAAAAAGTTTG--ATAACCATA 24595891 Score = 37.4 bits (40), Expect = 5.3 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 808 AATAGATGGGATACTTGGGGAAGG-TTCGTTG 838 |||| ||||||||||||||| ||| || |||| Sbjct 28853684 AATACATGGGATACTTGGGGTAGGCTTAGTTG 28853715 Score = 37.4 bits (40), Expect = 5.3 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 124 AAAAAGAAAATATAAAGCAC 143 |||||||||||||||||||| Sbjct 30289771 AAAAAGAAAATATAAAGCAC 30289790 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 170 bits (188), Expect = 4e-40 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 679 GGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAGCCATTATGAGATGAATCCG 738 |||||||| || || | || ||| ||||| | || | | ||||||||| | || ||| Sbjct 5533435 GGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACTCTTACTCATTATGAGTTAAACCCG 5533376 Query 739 GGAAAAGGACAAGCGGTTCTGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAAC 798 ||||| || |||| ||||||| || || | |||||||| || || || || || Sbjct 5533375 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGATCTTTCTTACGCAGACCGGTATCCAAAT 5533316 Query 799 CACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAA 858 ||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 5533315 AACGACAATGCTAGATGGGATACATGGGGAAGGTTCGTTGAGAGAAGTGTTGCTTATCAA 5533256 Query 859 CCTTGGATATGGACTGCTGGCAACCACGA 887 || |||||||||||||| || || ||||| Sbjct 5533255 CCATGGATATGGACTGCAGGGAATCACGA 5533227 Score = 154 bits (170), Expect = 3e-35 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGAGAC 1112 |||||| ||||||||| ||||||| ||| |||| || | | ||| || | || ||||| Sbjct 5532705 ATACACCCCTCAATACCAATGGCTTGAACAGGAATTGCCAAAAGTTAACAGGACTGAGAC 5532646 Query 1113 GCCATGGCTTATAGT-CTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACA 1171 || ||| | || || |||| ||||| ||| | || | |||||| ||||||| | Sbjct 5532645 ACCTTGGTTGATTGTTCTTA-TGCATTCCCCCTGGTATAATAGCTACAACTATCATTATA 5532587 Query 1172 TGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATG 1231 |||| || ||||| ||||||| ||||| || ||||||||| || ||||| ||||||| Sbjct 5532586 TGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTTGTGAAGTACAAAGTTGATG 5532527 Query 1232 TTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATC 1268 | || |||||||||||||||||||| ||||| |||| Sbjct 5532526 TGGTATTTGCAGGTCATGTTCATGCTTATGAACGATC 5532490 Score = 55.4 bits (60), Expect = 2e-05 Identities = 73/99 (74%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 574 ACGAAATACTACTACGAAATTGGGAGTGGCAAGTGGTCCA-GACGGTTCTGGTTCTTTAT 632 || ||||||||||||| |||||| ||| | |||| | | ||||||||| ||| Sbjct 5533758 ACCAAATACTACTACGTGGTTGGGATTGGGCA-CACTCCACGGCAGTTCTGGTTTATTAC 5533700 Query 633 CCCGCCTAAATCAGGCCCTGACGTACCTTACACATTTGG 671 || ||| || |||||||| || ||||| |||||||| Sbjct 5533699 TCCCCCTGAAGTTGGCCCTGATGTGCCTTATACATTTGG 5533661 Score = 44.6 bits (48), Expect = 0.036 Identities = 47/62 (76%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 307 GACATGCCACTAGACAGCGATGTTTTTGAAGTTCCTCCTGGTCCTAATTCACCTCAACAG 366 || ||||| || || |||||||| ||| | | ||||| || |||| | ||||||||| Sbjct 5534436 GATATGCCTCTGGATAGCGATGTCTTTCGAATCCCTCCCGGCTATAATGCGCCTCAACAG 5534377 Query 367 GT 368 || Sbjct 5534376 GT 5534375 Score = 39.2 bits (42), Expect = 1.5 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1608 TTTTATTTTTGCAGCAATTCTAAA 1631 ||||||||||||||||||| |||| Sbjct 14999255 TTTTATTTTTGCAGCAATTGTAAA 14999232 Score = 39.2 bits (42), Expect = 1.5 Identities = 38/48 (79%), Gaps = 2/48 (4%) Strand=Plus/Minus Query 1705 AAAAGTTTGTTATTACCATAAGTGGTTTTGCACCTAT--ACAAGTTAA 1750 ||||||||| || | ||| || ||||||||||||| | ||||||| Sbjct 19931308 AAAAGTTTGGTAATTAAATATGTTGTTTTGCACCTATTAAAAAGTTAA 19931261 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 158 bits (174), Expect = 2e-36 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 679 GGGGATCTAGGACAAACTTATGACTCAAATAGTACGTTAAGCCATTATGAGATGAATCCG 738 |||||||| || || | || ||| ||||| | ||| | | ||||| ||| | || || Sbjct 24735507 GGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACGCTTACTCATTACGAGTTAAACCCA 24735566 Query 739 GGAAAAGGACAAGCGGTTCTGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAAC 798 ||||| || |||| ||||||| || ||| | ||||| || || ||| || || Sbjct 24735567 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGACCTCTCTTATGCAGACAACTATCCAAAT 24735626 Query 799 CACGACAACAATAGATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAA 858 || ||||| |||||||||||| |||||||||||||| ||| |||||||||| |||||| Sbjct 24735627 CATGACAATGTTAGATGGGATACATGGGGAAGGTTCGTCGAGAGAAGTGTTGCATATCAA 24735686 Query 859 CCTTGGATATGGACTGCTGGCAACCACGAAATCGACTTCGTTCCTGACAT 908 || |||||||||||||| || || ||||| | || |||| ||||| || Sbjct 24735687 CCATGGATATGGACTGCAGGGAATCACGAGTTAGATTTCGCCCCTGAGAT 24735736 Score = 138 bits (152), Expect = 2e-30 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGAGAC 1112 ||| ||||||||||||| |||||| ||| |||| ||| ||| ||| | | ||||| Sbjct 24737161 ATATACACCTCAATACACATGGCTCGAAGAGGAACTACCGAAAGTTAATAGGGCCGAGAC 24737220 Query 1113 GCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACAT 1172 || ||||| || || | |||| ||| | || | ||||||| ||||||| || Sbjct 24737221 ACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCATTATAT 24737280 Query 1173 GGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATGT 1232 ||| || ||||| ||||||| |||| || |||||||| || || || |||||||| Sbjct 24737281 GGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTATAAAGTTGATGT 24737340 Query 1233 TGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATC 1268 || ||||| |||||||||||||| |||||| |||| Sbjct 24737341 GGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24737376 Score = 41.0 bits (44), Expect = 0.43 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 48 TCCTTTCTTGGaaaaaaaaaaa 69 |||||||||||||||||||||| Sbjct 8378601 TCCTTTCTTGGAAAAAAAAAAA 8378580 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 109 bits (120), Expect = 1e-21 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 1053 ATACACACCTCAATACAAATGGCTGGAAAAGGAGTT-ACAAGGAGTGAATCGAACAGAGA 1111 |||||| |||||||||| ||||| |||||||| | || | ||| |||||| | || | Sbjct 19374191 ATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAA-AGTAAATCGAGCTGAAA 19374249 Query 1112 CGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTATGTGCATCATTACA 1171 | |||||||||||||| | | || || | || | ||| | | ||||| | Sbjct 19374250 CTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTATA 19374309 Query 1172 TGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATG 1231 ||||||| |||| ||||||| | | ||| |||||||| || ||| ||||| Sbjct 19374310 TGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGACA 19374369 Query 1232 TTGTGTTTGCAGGTCATGTTCATGCCTATGAG 1263 |||| ||||| ||||||||||||||||||||| Sbjct 19374370 TTGTTTTTGCTGGTCATGTTCATGCCTATGAG 19374401 Score = 93.3 bits (102), Expect = 8e-17 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 758 TGTTTGTAGGAGACTTGTCTTACGCGGATCGCTACCCTAACCACGACAACAATAGATGGG 817 |||||||||| || | ||||| || ||| |||| ||||| ||||| | ||||||| Sbjct 19373522 TGTTTGTAGGTGATCTTTCTTATGCTGATGATCACCCAAACCATGACAATGAGAGATGGG 19373581 Query 818 ATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGACTGCTG 877 | || ||||| | || ||||| |||| ||| ||||| || ||||| |||||||||| Sbjct 19373582 ACACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTG 19373641 Query 878 GCAACCACGAA 888 |||| || ||| Sbjct 19373642 GCAATCATGAA 19373652 Score = 82.4 bits (90), Expect = 1e-13 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1402 CCACAACCAAAATACTCCGCGTTTCGAGAAGCTAGCTTTGGGCACGGGTTGCTAGAGATT 1461 |||||||||| || || || || || ||||| ||||||||||||| | || | || Sbjct 19374865 CCACAACCAAGTTATTCTGCCTTCCGGGAAGCAAGCTTTGGGCACGCAATTCTGGCTATA 19374924 Query 1462 AAAAACAGAACTCATGCTTACTTCAGCTGGAATCGGAACCAAGATGGGAACGCCGTGGCA 1521 || || ||||| |||||| ||| | ||| | || ||||||||| | || || || || Sbjct 19374925 AAGAATAGAACCCATGCTCACTATACTTGGCACCGCAACCAAGATAGTAATGCTGTTGCT 19374984 Query 1522 GCAGATTCTGTGTGG 1536 || |||||| | ||| Sbjct 19374985 GCTGATTCTCTTTGG 19374999 Score = 48.2 bits (52), Expect = 0.003 Identities = 89/131 (68%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 922 CCATTCAAGCCTTTTATGAATCGGTATCATACGCCACATAAGGCATCAGGAAGTATCTCT 981 || |||||||| | |||||| | || || ||| | | |||| |||| || Sbjct 19373966 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAGAGTACATCC 19374025 Query 982 CCATTGTGGTATTCCATCAAAAGGGCGTCAGCTTATATTATTGTTATGTCATGTTACTCA 1041 ||| | |||||||||||||| | || || || | || ||||| | || | ||||||| Sbjct 19374026 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 19374085 Query 1042 TCTTATGGGAT 1052 | ||||| || Sbjct 19374086 GCATATGGTAT 19374096 Score = 37.4 bits (40), Expect = 5.3 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 106 TATCTCATTTAATTTCCCAAAAA 128 |||||||||||||||||||| || Sbjct 4567496 TATCTCATTTAATTTCCCAACAA 4567518 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 87.8 bits (96), Expect = 3e-15 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 1050 GATATACACACCTCAATACAAATGGCTGGAAAAGGAGTTACAAGGAGTGAATCGAACAGA 1109 || ||| |||| ||||| | |||||| |||| || || || ||||| || | | | Sbjct 1043391 GAAATATACACTTCAATGGAGGTGGCTGCAAAAAGAACTAAAAAGAGTGGATAGGAGGAA 1043450 Query 1110 GACGCCATGGCTTATAGTCTTAGTGCATAGCCCGTTTTACAGTAGCTA-TGTGCATCATT 1168 ||| || |||||||| | | ||||| || | |||||||| | | || || | Sbjct 1043451 GACACCTTGGCTTATTATTCTCCTGCATGTACCCATCTACAGTAGTAACTCAGCC-CACT 1043509 Query 1169 ACATGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTG 1228 | ||||||||||||| || ||| | | || |||||||||| || | |||| Sbjct 1043510 ATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGAGTTG 1043569 Query 1229 ATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATCGG 1270 || | || ||||| || || |||||||||||||| ||||||| Sbjct 1043570 ATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATCGG 1043611 Score = 62.6 bits (68), Expect = 1e-07 Identities = 63/82 (77%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 812 GATGGGATACTTGGGGAAGGTTCGTTGAGCGAAGTGTTGCTTATCAACCTTGGATATGGA 871 |||||||| | ||||| | || ||||||||||| ||| ||||| || ||||| ||| Sbjct 1042178 GATGGGATGCATGGGGCCGTTTTATTGAGCGAAGTACTGCATATCAGCCATGGATTTGGT 1042237 Query 872 CTGCTGGCAACCACGAAATCGA 893 | ||||| || || ||||| || Sbjct 1042238 CAGCTGGGAATCATGAAATAGA 1042259 Score = 37.4 bits (40), Expect = 5.3 Identities = 34/41 (83%), Gaps = 3/41 (7%) Strand=Plus/Plus Query 1570 ACATGGCTTGA-TGCATTTTAAAGACAAATTGAAGAAGGTT 1609 |||||| || | ||| ||||||| ||||||||||||| || Sbjct 19325747 ACATGGTTTAAATGC--TTTAAAGTCAAATTGAAGAAGCTT 19325785 Score = 37.4 bits (40), Expect = 5.3 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 1584 ATTTTAAAGACAAATTGA-AGAAGGTTTTATT 1614 |||||||||||||||| | || ||||||| || Sbjct 28633564 ATTTTAAAGACAAATTTATAGTAGGTTTTTTT 28633533 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 55.4 bits (60), Expect = 2e-05 Identities = 56/73 (77%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 789 CTACCCTAACCACGACAACAATAGATGGGATA----CTTGGGGAAGGTTCGTTGAGCGAA 844 ||| || || || || || ||||||||||| | |||| ||||||||| || ||| Sbjct 268092 CTATCCCAATCATGAAAATGCTAGATGGGATATATACATGGGAAAGGTTCGTCAAGAGAA 268151 Query 845 GTGTTGCTTATCA 857 ||||||||||||| Sbjct 268152 GTGTTGCTTATCA 268164 Score = 51.8 bits (56), Expect = 2e-04 Identities = 45/56 (80%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 853 TATCAACCTTGGATATGGACTGCTGGCAACCACGAAATCGACTTCGTTCCTGACAT 908 |||||||| |||||||||||||| || || ||||| | || |||| ||||| || Sbjct 275383 TATCAACCATGGATATGGACTGCAGGGAATCACGAGTTAGATTTCGCCCCTGAAAT 275438 Score = 37.4 bits (40), Expect = 5.3 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1061 CTCAATACAAATGGCTGGAAAAG 1083 |||||||||||||||| |||||| Sbjct 6281195 CTCAATACAAATGGCTTGAAAAG 6281173 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 48.2 bits (52), Expect = 0.003 Identities = 34/38 (89%), Gaps = 2/38 (5%) Strand=Plus/Plus Query 48 TCCTTTCTTGGaaaaaaaaaaaaa--aaTCATATGATT 83 |||||||||||||||||||||||| ||||| | |||| Sbjct 26134025 TCCTTTCTTGGAAAAAAAAAAAAATCAATCACAAGATT 26134062 Score = 37.4 bits (40), Expect = 5.3 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1608 TTTTATTTTTGCAGCAATTCTAAACGAATAAAT 1640 |||||| |||||||||||| ||| ||||||| Sbjct 1862108 TTTTATACTTGCAGCAATTCAAAATAAATAAAT 1862076 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 48.2 bits (52), Expect = 0.003 Identities = 34/39 (87%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1225 GTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAG 1263 || |||||||| ||||| || ||||| |||||||||||| Sbjct 1133356 GTGGATGTTGTTTTTGCCGGACATGTACATGCCTATGAG 1133394 Score = 44.6 bits (48), Expect = 0.036 Identities = 33/39 (85%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 1224 GGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGA 1262 ||| || || || |||||||| ||||||||||| ||||| Sbjct 1111668 GGTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGA 1111630 Score = 39.2 bits (42), Expect = 1.5 Identities = 32/39 (82%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 1224 GGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGA 1262 ||| ||| | || ||||| || ||||||||||| ||||| Sbjct 1123459 GGTCGATTTGGTTTTTGCTGGACATGTTCATGCATATGA 1123421 Score = 37.4 bits (40), Expect = 5.3 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1695 TCATACAGAAAAAAGTTTGTTATTA 1719 ||||| ||||| ||||||||||||| Sbjct 12940293 TCATAAAGAAATAAGTTTGTTATTA 12940269 Score = 37.4 bits (40), Expect = 5.3 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1562 AAAAGAAGACATGGCTTGATGCATTTTAAAGACAA 1596 |||| || | |||| |||||||||||||| |||| Sbjct 19617526 AAAAAAAAAAATGGACTGATGCATTTTAAATACAA 19617560 Score = 37.4 bits (40), Expect = 5.3 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 227 TCTTCTTGCTAAGTGTTCTTGTTGAGTTTT 256 ||| |||| | ||| ||||||||||||||| Sbjct 28875014 TCTACTTGATGAGTTTTCTTGTTGAGTTTT 28875043 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 41.0 bits (44), Expect = 0.43 Identities = 33/39 (85%), Gaps = 1/39 (3%) Strand=Plus/Minus Query 1223 AGGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATG 1261 ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 15547938 AGGTTCATGTTATGTTTCAAGTTCATGTTCATG-CTATG 15547901 Score = 37.4 bits (40), Expect = 5.3 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 118 TTTCCCAAAAAGAAAATATAAAGCA 142 |||||| ||||| |||||||||||| Sbjct 9218494 TTTCCCTAAAAGTAAATATAAAGCA 9218470 Score = 37.4 bits (40), Expect = 5.3 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1225 GTTGATGTTGTGTTTGCAGGTCATGTTCATGC 1256 ||| ||||| ||||| || ||||||||||||| Sbjct 20931830 GTTCATGTTATGTTT-CAAGTCATGTTCATGC 20931860 Score = 37.4 bits (40), Expect = 5.3 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1232 TTGTGTTTGCAGGTCATGTTCATGCCTATG 1261 ||||||| |||||||||||| || ||||| Sbjct 31183635 TTGTGTTCACAGGTCATGTTCTTGTCTATG 31183606 Score = 37.4 bits (40), Expect = 5.3 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 117 ATTTCCCAAAAAGAAAATATAAA 139 ||||||||||||||||| ||||| Sbjct 35713896 ATTTCCCAAAAAGAAAAAATAAA 35713874 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 41.0 bits (44), Expect = 0.43 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 515 TCTTTAATTACACGTCTGGTTATATTCACCAT 546 |||| ||||||||||||||| ||||||||| Sbjct 18693631 TCTTGAATTACACGTCTGGTATCATTCACCAT 18693662 Score = 39.2 bits (42), Expect = 1.5 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 894 CTTCGTTCCTGACATTGGTGA 914 ||||||||||||||||||||| Sbjct 7851224 CTTCGTTCCTGACATTGGTGA 7851244 Score = 37.4 bits (40), Expect = 5.3 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1206 ATGGTTTGTCAAATACAAGGTTGATGTTGT 1235 ||||||| ||||||||||||| | || ||| Sbjct 13460028 ATGGTTTCTCAAATACAAGGTAGTTGCTGT 13459999 Score = 37.4 bits (40), Expect = 5.3 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 115 TAATTTCCCAAAAAGAAAATATAAA 139 || || ||||||||||||||||||| Sbjct 14525903 TATTTCCCCAAAAAGAAAATATAAA 14525927 Score = 37.4 bits (40), Expect = 5.3 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 118 TTTCCCAAAAAGAAAATATAAAGCA 142 |||||| ||||| |||||||||||| Sbjct 29091821 TTTCCCTAAAAGTAAATATAAAGCA 29091797 Score = 37.4 bits (40), Expect = 5.3 Identities = 29/32 (91%), Gaps = 2/32 (6%) Strand=Plus/Plus Query 1165 CATTACATGGAAGGTGAAACATTGAGAGTCAT 1196 |||||||| |||||||| ||||||||||||| Sbjct 49719162 CATTACATT-AAGGTGAA-CATTGAGAGTCAT 49719191 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.5 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1023 TGTTATGTCATGTTACTCATCTTATG 1048 ||||||||||| ||| |||||||||| Sbjct 25927338 TGTTATGTCATATTATTCATCTTATG 25927313 Score = 37.4 bits (40), Expect = 5.3 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1286 TTGCTTACAACATTGTCAATGGATTGTG 1313 |||||||||||||||||||| | || || Sbjct 30549980 TTGCTTACAACATTGTCAATAGTTTCTG 30550007 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.5 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1697 ATACAGAAAAAAGTTTGTTATTACCA 1722 ||||||||| ||||||||||||||| Sbjct 16978128 ATACAGAAATTAGTTTGTTATTACCA 16978153 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 1.5 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1223 AGGTTGATGTTGTGTTTGCAGGTCATGTTCA 1253 ||||| ||||||||||| || ||||||||| Sbjct 28513494 AGGTTCATGTTGTGTTTCAAGTTCATGTTCA 28513524 Score = 37.4 bits (40), Expect = 5.3 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1024 GTTATGTCATGTTACTCATCTTA 1046 ||||||||||||| ||||||||| Sbjct 32226951 GTTATGTCATGTTTCTCATCTTA 32226929 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 5.3 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1598 TTGAAGAAGGTTTTATTTTT 1617 |||||||||||||||||||| Sbjct 7372083 TTGAAGAAGGTTTTATTTTT 7372102 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 5.3 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 59 aaaaaaaaaaaaaaaTCA-TATGATTGTGT 87 ||||||||| |||||| | ||||||||||| Sbjct 22575762 AAAAAAAAATAAAAATAAATATGATTGTGT 22575791 Score = 37.4 bits (40), Expect = 5.3 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1556 GAGCTCAAAAGAAGACATGGCTT 1578 ||||||||||||||| ||||||| Sbjct 26826543 GAGCTCAAAAGAAGAAATGGCTT 26826565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928186413448 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2