BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=1326 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm7S 192 8e-47 lcl|Jm4D 178 2e-42 lcl|Jm3S 141 1e-31 lcl|Jm8S 131 2e-28 lcl|Jm3D 114 2e-23 lcl|Jm2D 95.1 2e-17 lcl|Jm4S 75.2 2e-11 lcl|Jm6D 50.0 6e-04 lcl|Jm5D 42.8 0.092 lcl|Jm1D 39.2 1.1 lcl|Jm8D 37.4 3.9 lcl|Jm6S 37.4 3.9 lcl|Jm5S 37.4 3.9 lcl|Jm2S 37.4 3.9 lcl|Jm1S 37.4 3.9 >Query1 on lcl|Jm7S| Query1 on lcl|Jm7S Length=21889424 Score = 192 bits (212), Expect = 8e-47 Identities = 174/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 799 AAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAGAG 858 || ||||| || || || | ||||||||| | ||||||| |||||||| ||| | || Sbjct 18698316 AAATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAAAGTTAATCGAGCTGAA 18698375 Query 859 ACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 918 ||| | ||||| || ||||| ||||| | |||||||| |||||||| || || || ||| Sbjct 18698376 ACTCCTTGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTAT 18698435 Query 919 ATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCGAT 978 |||||||| || ||||||||||| || || || | ||||| || |||| |||||| || Sbjct 18698436 ATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGAC 18698495 Query 979 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATCA 1017 || || ||||||||||||||||||||||| ||||| ||| Sbjct 18698496 ATTGTTTTTGCTGGTCATGTTCATGCCTATGAGCGTTCA 18698534 Score = 104 bits (114), Expect = 3e-20 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 671 CCTTT-AAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACATCT 729 ||||| ||||| || | ||| | |||||||| || |||| | | || || |||||||| Sbjct 18698093 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAGAGTACATCC 18698152 Query 730 CCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCTTCTTACTCA 789 ||||||||||| || ||||| || || || | ||||||| || ||||||||||||||| Sbjct 18698153 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 18698212 Query 790 GCTTATG 796 || |||| Sbjct 18698213 GCATATG 18698219 Score = 100 bits (110), Expect = 4e-19 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1137 CAGTTTCACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCAAGTTTTGGACACGC 1196 |||||| || || || ||||||||||| || || || |||| ||||| ||||| ||||| Sbjct 18698971 CAGTTTTACTGACCCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCACGC 18699030 Query 1197 CCTTTTGGAAATAAAGAACAGGACTCATGCACATTACACTTGGCATAGGAATAAAGAAGA 1256 || ||| |||||||| ||||| ||||| || || |||||||| | || |||| Sbjct 18699031 AATTCTGGCTATAAAGAATAGGACCCATGCCCACTATACTTGGCACCGCAACCAAGATAG 18699090 Query 1257 CGAGGCTGTTATTGCAGATTCTATTTGG 1284 | |||||| ||| |||||| ||||| Sbjct 18699091 TAATGCTGTTGCTGCTGATTCTCTTTGG 18699118 Score = 77.0 bits (84), Expect = 4e-12 Identities = 103/141 (73%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 508 TTTGTCGGAGATTTGTCCTATGCTGATGACCATCCCAACCACGACCAAAGAAA-ATGGGA 566 ||||| || ||| | || ||||| ||||| || || ||||| ||| || || | |||||| Sbjct 18697643 TTTGTAGGTGATCTTTCTTATGCAGATGATCACCCAAACCATGAC-AATGAGAGATGGGA 18697701 Query 567 TTCATACGGCCGCTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGAGTTGGGCTGCAGG 626 ||| ||||||||| | || || || ||||||||||| |||| |||| |||| || Sbjct 18697702 CACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGG 18697761 Query 627 GAACTACGAGATAGATTACGC 647 || | || | ||||| || Sbjct 18697762 CAATCATGAACTTGATTATGC 18697782 Score = 66.2 bits (72), Expect = 8e-09 Identities = 75/101 (74%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1039 TACAATATCACTGATGGAATGAGTACTCCGGTGAAAGATCAAAATGCTCCGATTTACATT 1098 |||||||| || |||||| | || || || | || || ||| ||| || || ||||| Sbjct 18698642 TACAATATAACAGATGGACTCAGCACGCCAATAAAGGACCAATCTGCACCAATATACATA 18698701 Query 1099 ACCATTGGAGATGGAGGCAACATAGAAGGAATCGCTAACAG 1139 || ||||||||||| || || | ||||| || ||| |||| Sbjct 18698702 ACAATTGGAGATGGCGGTAATGTTGAAGGCATTGCTGACAG 18698742 Score = 53.6 bits (58), Expect = 5e-05 Identities = 40/47 (85%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 383 ACCCCTCCAAAAGTCGGTCCAGATGTTCCCTACACATTCGGTATTAT 429 || ||||| ||||| || ||||||||||| |||||||| || ||||| Sbjct 18697119 ACTCCTCCCAAAGTGGGGCCAGATGTTCCATACACATTTGGCATTAT 18697165 Score = 37.4 bits (40), Expect = 3.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1263 TGTTATTGCAGATTCTATTTGGTTGAAG 1290 |||| | ||||||| ||||||||||||| Sbjct 1212051 TGTTTTAGCAGATTTTATTTGGTTGAAG 1212024 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 178 bits (196), Expect = 2e-42 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 799 AAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAGAG 858 || ||||| || || || | |||||| || | ||||||| |||||||| ||| | || Sbjct 7641599 AAATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCTGAA 7641658 Query 859 ACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 918 ||| ||||||| || ||||| ||||| | |||||||| |||||||| || || || | | Sbjct 7641659 ACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTTT 7641718 Query 919 ATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCGAT 978 |||||||| || ||||||||||| | || || | ||||| || |||| |||||| || Sbjct 7641719 ATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGAC 7641778 Query 979 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || || ||||| ||||||||||||||||| ||||| || Sbjct 7641779 ATTGTGTTTGCCGGTCATGTTCATGCCTATGAGCGTTC 7641816 Score = 104 bits (114), Expect = 3e-20 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 671 CCTTT-AAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACATCT 729 ||||| ||||| || | ||| | |||||||| || |||| | | || ||||||||||| Sbjct 7641325 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAAAGTACATCC 7641384 Query 730 CCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCTTCTTACTCA 789 ||||||||||| || || || || || || | ||||||| || ||||||||||||||| Sbjct 7641385 CCACTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 7641444 Query 790 GCTTATG 796 || |||| Sbjct 7641445 GCATATG 7641451 Score = 102 bits (112), Expect = 1e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 911 ATCACTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACA 970 |||| ||||||||||| || | ||||||||| | | |||| |||||| || || | | Sbjct 27873882 ATCATTATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATA 27873941 Query 971 AAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 |||| ||| | |||||||||||||||||||||||||| || ||||| Sbjct 27873942 AAGTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 27873987 Score = 86.0 bits (94), Expect = 9e-15 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1137 CAGTTTCACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCAAGTTTTGGACACGC 1196 |||||| || || || ||||||||||| || || || |||| ||||| ||||| || || Sbjct 7642161 CAGTTTTACTGACCCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGC 7642220 Query 1197 CCTTTTGGAAATAAAGAACAGGACTCATGCACATTACACTTGGCATAGGAATAAAGAAGA 1256 | | | |||||||| ||||| ||||| || || |||||||| | || |||| Sbjct 7642221 AACTCTCGCTATAAAGAATAGGACCCATGCCCACTATACTTGGCACCGTAACCAAGATAG 7642280 Query 1257 CGAGGCTGTTATTGCAGATTCTATTTGGTT 1286 | |||||| || |||||| ||||||| Sbjct 7642281 TAATGCTGTTGCAGCTGATTCTCTTTGGTT 7642310 Score = 86.0 bits (94), Expect = 9e-15 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 1144 ACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCAAGTTTTGGACACGCCCTTTTG 1203 || || ||||| ||||| |||||||| | | || || || ||||| || | |||| Sbjct 27875016 ACAGAGCCCCAGCCAAGCTACTCGGCTTACCGTGAAGCCAGCTTTGGTCATGGGATTTTA 27875075 Query 1204 GAAATAAAGAACAGGACTCATGCACATTACACTTGGCATAGGAATAAAGAAGACGAGGCT 1263 || |||||||||||||||||||| ||| ||||||| | ||| |||| | | | ||| Sbjct 27875076 GACATAAAGAACAGGACTCATGCCTATTTTGGTTGGCATCGCAATCAAGATGGCTATGCT 27875135 Query 1264 GTTATTGCAGATTCTATTTGGTTGAAGAAAAGATA 1298 || || |||||| | |||||| || ||||| Sbjct 27875136 GTAGAAGCTGATTCTGTATGGTTGGCAAACAGATA 27875170 Score = 84.2 bits (92), Expect = 3e-14 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 661 GAGACTCAACCCTTTAAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAA 720 || ||| |||||||||||| || | |||||||| || || || || |||| || | Sbjct 27873110 GAAACTACACCCTTTAAGCCTTATACAAATCGTTATCATGTACCATATGAAGCATCAGAT 27873169 Query 721 AGTACATCTCCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCT 780 |||||||| || |||||||||| ||||| |||| || | || ||||| || | || Sbjct 27873170 AGTACATCCCCCTTTTGGTACTCCATCAAGAGAGCTTCAGCCTATATCATTGTCATGTCG 27873229 Query 781 TCTTACTCAGCTTATG 796 || ||| |||||| || Sbjct 27873230 TCCTACACAGCTTTTG 27873245 Score = 59.0 bits (64), Expect = 1e-06 Identities = 41/47 (87%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 383 ACCCCTCCAAAAGTCGGTCCAGATGTTCCCTACACATTCGGTATTAT 429 || ||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 7639628 ACTCCTCCCAAAGTAGGGCCAGATGTTCCATACACATTTGGTATTAT 7639674 Score = 53.6 bits (58), Expect = 5e-05 Identities = 87/123 (71%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 508 TTTGTCGGAGATTTGTCCTATGCTGATGACCATCCCAACCACGACCAAAGAAA-ATGGGA 566 |||| || ||| | || ||||| ||||| || || | || ||| || || | |||||| Sbjct 7639875 TTTGCGGGTGATCTTTCTTATGCAGATGATCACCCATATCATGAC-AATGAGAGATGGGA 7639933 Query 567 TTCATACGGCCGCTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGAGTTGGGCTGCAGG 626 ||| || || ||| | || || || ||||||||||| |||| |||| |||| || Sbjct 7639934 CACATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGG 7639993 Query 627 GAA 629 || Sbjct 7639994 CAA 7639996 Score = 53.6 bits (58), Expect = 5e-05 Identities = 58/77 (75%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1052 ATGGAATGAGTACTCCGGTGAAAGATCAAAATGCTCCGATTTACATTACCATTGGAGATG 1111 |||| || | ||||| | | || ||| |||||| ||||||| ||||||||||||| Sbjct 27874820 ATGGGTTGTGCACTCCCATTAGTGACCAATCTGCTCCCGTTTACATAACCATTGGAGATG 27874879 Query 1112 GAGGCAACATAGAAGGA 1128 |||| || | |||||| Sbjct 27874880 GAGGAAATCTTGAAGGA 27874896 Score = 37.4 bits (40), Expect = 3.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 158 CTCCTGAACAAGTTCACATAACA 180 ||||||||||||| ||||||||| Sbjct 3319799 CTCCTGAACAAGTACACATAACA 3319777 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 29442672 CAGATTCTATTTGGTTGAAG 29442691 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 141 bits (156), Expect = 1e-31 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 799 AAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAGAG 858 || || || || || || | ||||| |||| || || ||||||||| | | ||| Sbjct 24071716 AAATATACGCCTCAATACACATGGCTTGAAGAGGAACTACCGAAAGTTAATAGGACCGAG 24071775 Query 859 ACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 918 || | |||||||||||||| || | || ||||| || ||| |||| ||||| ||| Sbjct 24071776 ACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCATTAT 24071835 Query 919 ATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCGAT 978 ||||| || || | ||||||||| | ||| ||| | ||||| || | ||||||| ||| Sbjct 24071836 ATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTACAAAGTTGAT 24071895 Query 979 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 | || |||||||||||||||||||| || |||||||| Sbjct 24071896 GTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24071933 Score = 60.8 bits (66), Expect = 3e-07 Identities = 75/103 (73%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1025 TATCCAACATTCATTACAATATCACTGATGGAATGAGTACTCCGGTGAAAGATCAAAATG 1084 ||||||||||| |||||| || |||| || | || || || | ||||||| | Sbjct 24072173 TATCCAACATTGCCTACAATGTCGTAAATGGTATTTGCACACCTGTAAGAGATCAATCAG 24072232 Query 1085 CTCCGATTTACATTACCATTGGAGATGGAGGCAACATAGAAGG 1127 | || | ||||| |||||||| |||||||| ||| | ||||| Sbjct 24072233 CGCCTGTATACATAACCATTGGTGATGGAGGGAACCTCGAAGG 24072275 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 8415431 CAGATTCTATTTGGTTGAAG 8415450 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 131 bits (144), Expect = 2e-28 Identities = 162/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 799 AAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAGAG 858 || || ||||| || || |||||| |||| || || ||||||||| | | ||| Sbjct 356859 AAATATACACCTCAATACAAATGGCTCAAAGAGGAACTACCGAAAGTTAATAGGACCGAG 356918 Query 859 ACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 918 || | ||| |||||||||| | || | || ||||| || ||| |||| ||||| ||| Sbjct 356919 ACACCTTGGTTGATTGTTCTTATGCATTCCCCTTGGTATAATAGCTATAACTATCATTAT 356978 Query 919 ATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCGAT 978 ||||| || || ||||||||| | ||| ||| | ||||| || | ||||||| ||| Sbjct 356979 ATGGAGGGGGAAGCCATGAGAGTAATGTTTGAGGCTTGGTTTGTGAAGTACAAAGTTGAT 357038 Query 979 ATCGTCTTTGCTGGTCATGTTCATGCCT---ACGAGCGATC 1016 | || |||||||||||||||||||| | | |||||||| Sbjct 357039 GTTGTATTTGCTGGTCATGTTCATGCTTATCATGAGCGATC 357079 Score = 73.4 bits (80), Expect = 5e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 690 TCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACATCTCCACTTTGGTACTCAATCAA 749 |||||| || || ||| ||||| | | | ||||| |||| ||||||| |||||||| Sbjct 356081 TCGTTATCATGTGGTTTATAAAGCTTTCAAGAGTACTGCTCCCTTTTGGTATTCAATCAA 356140 Query 750 ACGAGCCTCGACTTACATCATCGTACTCTCTTCTTACTCAGCTTA 794 |||| || ||||||||||| || | ||||| || ||||| || Sbjct 356141 GAGAGCTTCAACTTACATCATAGTGTTGTCTTCATATTCAGCATA 356185 Score = 37.4 bits (40), Expect = 3.9 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 778 TCTTCTTACTCAGCTTATGACAAGTACACA 807 ||||| ||||| |||||||||||||||| Sbjct 9623692 TCTTCCAACTCAAATTATGACAAGTACACA 9623721 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 114 bits (126), Expect = 2e-23 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 841 AAAGTTAACCGATCAGAGACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAAC 900 ||||||||| | | ||||| | ||| |||||||||| | || | || ||||| || Sbjct 5459404 AAAGTTAACAGGACTGAGACACCTTGGTTGATTGTTCTAATGCATTCCCCCTGGTATAAT 5459345 Query 901 AGCAATAATTATCACTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTC 960 ||| | || ||||| |||||||| || || | ||||||||| | || ||| |||||| Sbjct 5459344 AGCTACAACTATCATTATATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTT 5459285 Query 961 GTCGAAAACAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || | ||||||| ||| | || ||||| ||||||||||| || || || ||||| Sbjct 5459284 GTGAAGTACAAAGTTGATGTGGTATTTGCAGGTCATGTTCACGCTTATGAACGATC 5459229 Score = 107 bits (118), Expect = 3e-21 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 668 AACCCTTTAAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACAT 727 |||| |||||||| |||| ||||||||||| || ||||||||||| || | ||||| Sbjct 5459856 AACCTTTTAAGCCTTACACTAATCGTTACCATGTGCCTTACAAAGCTTCAAACAGTACTG 5459797 Query 728 CTCCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCTTCTTACT 787 |||| ||||||| |||||||| |||| || |||||||||| || | |||| |||| Sbjct 5459796 CTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGTCTTGGCTTCATACT 5459737 Query 788 CAGCTTATG 796 | || |||| Sbjct 5459736 CGGCATATG 5459728 Score = 62.6 bits (68), Expect = 1e-07 Identities = 88/124 (71%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 1177 GAGGCAAGTTTTGGACACGCCCTTTTGGAAATAAAGAACAGGACTCATGCACATTACACT 1236 ||||| |||||||| || ||| || || || |||||| | || ||||| | |||| | Sbjct 5458650 GAGGCCAGTTTTGGTCATGCCACCTTTGATATCAAGAACCGAACCCATGCTTACTACAGT 5458591 Query 1237 TGGCATAGGAATAAAGAAGACGAGGCTGTTATTGCAGATTCTATTTGGTTGAAGAAAAGA 1296 ||||| | ||| |||| | | || || ||||||||||| ||||| || ||| Sbjct 5458590 TGGCACCGTAATCAAGATGGATATGCGGTGGAAGCAGATTCTATGTGGTTTTTCAACAGA 5458531 Query 1297 TACT 1300 |||| Sbjct 5458530 TACT 5458527 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 95.1 bits (104), Expect = 2e-17 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 857 AGACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACT 916 ||||| | ||||| |||||||| | || | ||| ||||| |||||| | ||||| Sbjct 39777497 AGACTCCTTGGCTCATTGTTCTTATGCATGTGCCAATCTACAATAGCAATGAAGCTCACT 39777438 Query 917 ATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCG 976 | ||||| || || || ||| ||| || || ||| |||||| || | ||||||| | Sbjct 39777437 ACATGGAGGGGGAAAGTATGCGAGCTATATTTGAGAGTTGGTTCATCCATTACAAAGTTG 39777378 Query 977 ATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || | ||||||||||| ||||| ||||| || || |||| Sbjct 39777377 ATGTAGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATC 39777338 Score = 37.4 bits (40), Expect = 3.9 Identities = 49/68 (72%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 712 GCCTCCCAAAGTACATCTCCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATC 771 |||||| |||| | ||| ||||||||||| |||| || || || || | || ||| Sbjct 39778425 GCCTCCAAAAGCAGCAGTCCTCTTTGGTACTCCATCAGGCGTGCATCTGCTCATATAATC 39778366 Query 772 GTACTCTC 779 || || || Sbjct 39778365 GTGCTATC 39778358 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 75.2 bits (82), Expect = 2e-11 Identities = 79/104 (76%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 913 CACTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAA 972 ||||||||||||||||| || ||| ||| | || ||| |||||| ||| | | | Sbjct 1014224 CACTATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGA 1014283 Query 973 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || ||| |||| |||||||| || ||||||||||| || |||| Sbjct 1014284 GTTGATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATC 1014327 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 50.0 bits (54), Expect = 6e-04 Identities = 38/45 (84%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 969 CAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCG 1013 ||| || ||||| || ||||||||||||||||||| ||||| || Sbjct 36510532 CAATGTGGATATAGTACTTGCTGGTCATGTTCATGCTTACGAACG 36510488 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 42.8 bits (46), Expect = 0.092 Identities = 34/41 (83%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 973 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCG 1013 |||||| | || |||||||| ||||||||||| || || || Sbjct 1175171 GTCGATGTGGTTTTTGCTGGACATGTTCATGCATATGAACG 1175131 Score = 37.4 bits (40), Expect = 3.9 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 973 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGAT 1015 ||||| | || ||||| || ||||||||||| || || |||| Sbjct 1164142 GTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGAACGAT 1164100 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 39.2 bits (42), Expect = 1.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 890 CATGGTACAACAGCAATAATTATCAC 915 ||||| ||||||||||||| |||||| Sbjct 39381194 CATGGAACAACAGCAATAAATATCAC 39381219 >Query1 on lcl|Jm8D| Query1 on lcl|Jm8D Length=36225362 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 22375102 CAGATTCTATTTGGTTGAAG 22375083 >Query1 on lcl|Jm6S| Query1 on lcl|Jm6S Length=22373256 Score = 37.4 bits (40), Expect = 3.9 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 1169 CGTT-TAGGGAGGCAAGTTTTGGAC 1192 |||| |||||||||||||||||||| Sbjct 14412251 CGTTCTAGGGAGGCAAGTTTTGGAC 14412227 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 20809033 CAGATTCTATTTGGTTGAAG 20809052 >Query1 on lcl|Jm5S| Query1 on lcl|Jm5S Length=32113326 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 10940062 CAGATTCTATTTGGTTGAAG 10940081 Score = 37.4 bits (40), Expect = 3.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 336 CACATCTGGTTATCTTCACCACG 358 ||| ||||||||||||||||||| Sbjct 27700931 CACCTCTGGTTATCTTCACCACG 27700953 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 7292012 CAGATTCTATTTGGTTGAAG 7292031 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 37.4 bits (40), Expect = 3.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 544 AACCACGACCAAAGAAAATGGGATT 568 || ||||| |||||||||||||||| Sbjct 1331691 AAACACGAGCAAAGAAAATGGGATT 1331715 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 6920642 CAGATTCTATTTGGTTGAAG 6920623 Score = 37.4 bits (40), Expect = 3.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 533 ATGACCATCCCAACCACGACCAAAG 557 |||||||||||||| || ||||||| Sbjct 19879935 ATGACCATCCCAACAACAACCAAAG 19879911 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 21239896 CAGATTCTATTTGGTTGAAG 21239915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683618822985 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2