BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1605 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4S 178 2e-42 lcl|Jr1D 129 1e-27 lcl|Jr2S 123 4e-26 lcl|Jr2D 120 5e-25 lcl|Jr3D 104 4e-20 lcl|Jr1S 104 4e-20 lcl|Jr4D 102 1e-19 lcl|Jr8S 86.0 1e-14 lcl|Jr3S 80.6 4e-13 lcl|Jr5S 73.4 7e-11 lcl|Jr8D 41.0 0.39 lcl|Jr6D 39.2 1.4 lcl|Jr5D 39.2 1.4 lcl|Jr7S 37.4 4.8 lcl|Jr7D 37.4 4.8 lcl|Jr6S 37.4 4.8 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 178 bits (196), Expect = 2e-42 Identities = 435/662 (66%), Gaps = 33/662 (5%) Strand=Plus/Minus Query 49 TACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATACGATCTT 108 ||||||||||| || ||||| | || || ||||| |||||||||||||| ||||| || Sbjct 7871800 TACCATTTCAAGGCAATCATCATCGCCGGCATGGGGCTATTCACCGACGCCTACGACCTC 7871741 Query 109 TTCTGCATAGCACCGGTCATGAAAATGATTAGTCATGTTTATTACAACGGTGAC----TC 164 |||||||| | || |||||| | || | | ||||| ||| ||| | | || Sbjct 7871740 TTCTGCATCCCTCCCATCATGATTCTCATCGGACGGGTTTACTACGACGATAAAGAGGTC 7871681 Query 165 AATCAACA-----------CAGCCGTTCTTTCAACTTCTTACGCCATCGCTTTACTCGGC 213 || | | | | ||| | || || | ||||||||| | || || Sbjct 7871680 GATAAGTATCGGGTCCCACCCGGCGTGGTCTCGACCTTGGTGGCCATCGCTCTGCTGGGA 7871621 Query 214 ACAGCCACGGGTCAACTAGTCTTCGGTTACCTCGGTGACCGAGTCGGTCGTCGCCGAGTC 273 || || | |||||| | |||||||| ||||| |||| | ||||| | || || || Sbjct 7871620 ACTGCGATCGGTCAAGTGGTCTTCGGCAGGCTCGGAGACCAAATCGGTAGGCGGCGCGTG 7871561 Query 274 TACGGACTTTGTTTGATTATTATGATCCTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGC 333 |||||| ||| | |||||| | | |||||| | | || || || || | ||| Sbjct 7871560 TACGGAACCGCATTGCTAATTATGGTGGTGAGCTCCCTCGCGTGCGGGTTCTCGATATGC 7871501 Query 334 ACCACTCGTCGGTCTTGTGTTATGGTTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTA 393 | | | | ||| ||| ||| ||||| || | ||| ||||| || ||| | Sbjct 7871500 AGGAAGAGGGG---TTGCGTTCTGGCGAGCCTGGGGCTGTTCAGGTTCGCACTGGGTCTG 7871444 Query 394 GGTATCGGTGGTGATTACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGG 453 || |||||||| || |||||| | ||||| ||| ||||| ||||| || || |||| | Sbjct 7871443 GGAATCGGTGGGGACTACCCGTTATCGGCAGTCATCATGTCTGAGTTCGCGAACAAGACG 7871384 Query 454 ACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGC 513 |||||||| ||||| || || || || || |||||||| || || || ||||||| Sbjct 7871383 ACACGTGGAGCGTTCATAGCGGCTGTCTTCTCGATGCAGGGATTTGGAATTTTGGCCGCT 7871324 Query 514 TCTGCCGTGACCATGGCTGTTTGCGTGGCGTTTAAGAGAAGTGGCGGTGGTTTGGAGGTG 573 || | || || |||| || |||| ||| | | ||| | | | || Sbjct 7871323 TCAACGGTCACGATGGTGGTGTGCGCAATCTTTGA---------CCGTGCATCGAAAGTA 7871273 Query 574 GATGCGGCGGCTCCGACG------GAAGCTGACTTGGCCTGGAGACTTATACTTATGATC 627 | | ||| | ||| || ||||| | || ||||| || ||||| ||| | Sbjct 7871272 TCCCCAACTGCTGCAACGCCTGATGAGGCTGATATCGCATGGAGGCTGATACTGATGCTG 7871213 Query 628 GGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTTGATGCCTGAAACCGCAAGA 687 ||||| |||| ||||| || || || |||||||||||| ||||||| ||||| || || Sbjct 7871212 GGTGCGATTCCCGCTGCCTTAACATTTTATTGGCGAATGATGATGCCCGAAACTGCCAGG 7871153 Query 688 TA 689 || Sbjct 7871152 TA 7871151 Score = 163 bits (180), Expect = 5e-38 Identities = 458/697 (66%), Gaps = 42/697 (6%) Strand=Plus/Minus Query 843 CCATGGTCGCGACCTCTTCGCAGCCTCCTTTAATTGGTTCCTAGTAGACATTGTCTTCTA 902 |||||| || || | || || ||||| | ||||| || | |||||||||||||| Sbjct 7863377 CCATGGCCGTGATTTATTAGCTTGCTCCTGCACATGGTTTCTTCTCGACATTGTCTTCTA 7863318 Query 903 CACAAGCAACCTCCTCCTGTCCCATATCTTCAGTCATTA-CTCCAAGAAACCTTCCACTG 961 || ||||||||| ||| |||||| || | | || || |||| |||| | | Sbjct 7863317 CAGCAGCAACCTCTTCCAGTCCCAGATATACGAACACTATCTCC-CGAAA------AGAG 7863265 Query 962 CAGA---AAACGTCTACGACGCAGCCTTTGAAGTGGCGGAATTAGGAGCCATCATCGCTG 1018 ||| || | ||| | | || |||||||| || || | ||| || | || | Sbjct 7863264 AAGAGGTGAATGCCTATAAAGATGCTTTTGAAGTTGCAAAAATCCAAGCAATTGTTGCAG 7863205 Query 1019 CTTGCTCCACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTG 1078 | || || |||||||| || || ||||| || || || || || || | || | | Sbjct 7863204 CCTGTTCTACCATTCCAGGCTACTGGTTTACTGTCTATTTTATTGATGTCGTTGGAAGAG 7863145 Query 1079 TCAAAATCCAGATTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTCGCTGGTATTC 1138 ||| |||||| ||||| ||| ||| |||||| | ||||| ||| ||| || | Sbjct 7863144 TCAGAATCCAAGCAATGGGTTTTCTCTGCATGGCACTGGTTTATCTAGCAATTGGGATAC 7863085 Query 1139 CGTAC--AGTTGGTATTGGTCAAAGCACGAGCATAAT---AATAAAGGCTTCATGGTTCT 1193 | ||| | || ||||| ||||||||| ||| ||| |||||||| || Sbjct 7863084 CCTACGAAATT--CATTGG---------GAGCATAATACAAATGCAGGGTTCATGGTCCT 7863036 Query 1194 CTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCC 1253 ||| || | || |||||| ||||| || || ||||| || || || || | || Sbjct 7863035 CTATGGCCTCACCTTTTTCTTTGCAAATTTCGGACCAAACACAACCACCTTCATAGTGCC 7862976 Query 1254 CGCAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGG 1313 ||| |||| ||| || || | ||||| | || || || ||||| |||||||| || || Sbjct 7862975 CGCGGAGCTTTTTCCAGCAAAATTTAGAACAACATGCCATGGGATTTCTGGTGCTGCAGG 7862916 Query 1314 TAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGGAAAG 1373 ||| | ||||| || | || ||||||| || ||||||||| | | || | | |||| Sbjct 7862915 GAAGGTGGGGGCAATCATTGGTTCTGTTGGATTTTTGTGGGCTTCACATAA-AGGTAAAG 7862857 Query 1374 CGATGATAAAAACCAGATTTATCCCGAAGTAAACCGTATGAGAATTGCTTTCTTGA---T 1430 || || |||||||| | || | ||| | ||| | |||| | Sbjct 7862856 --------AATGGGAGGGCTATCCCGATGCAATTGGAATG---ACTGCATCATTGATATT 7862808 Query 1431 TCTTGGTGGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCACCAAGGAAACTAT 1490 |||| || ||||| |||| ||||| ||||||| | | ||||| || || || Sbjct 7862807 GCTTGCCGGAGTTTGTCTTGCGGGAATGGTGGTGACATTGCTTTTCACGCGTGAGACCAT 7862748 Query 1491 GGGAAGATCGTTAGAGGAGAACGAGCATGACCAAGAT 1527 ||| ||||| || |||||||| ||| |||| |||||| Sbjct 7862747 GGGGAGATCATTGGAGGAGAATGAGAATGATCAAGAT 7862711 Score = 161 bits (178), Expect = 2e-37 Identities = 321/472 (68%), Gaps = 15/472 (3%) Strand=Plus/Minus Query 49 TACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATACGATCTT 108 ||||||||||| || ||||| | || || ||||| || || |||||||| ||||| | Sbjct 7860309 TACCATTTCAAGGCAATCATCATCGCCGGCATGGGGCTCTTTACCGACGCCTACGACTTA 7860250 Query 109 TTCTGCATAGCACCGGTCATGAAAATGATTAGTCATGTTTATTACAA---CGGTGAC--- 162 |||||||| ||| ||||||| | ||| | | || || ||| | ||| | | Sbjct 7860249 TTCTGCATCCAACCCGTCATGATTCTCATTGGACGGGTCTACTACGAGCACGGGGCCGAT 7860190 Query 163 -----TCAATCAACACA-GCCGTTCTTTCAACTTCTTACGCCATCGCTTTACTCGGCACA 216 || | ||| | ||| | || | ||||||||| | | || || Sbjct 7860189 AAGTATCGGGCCCCACCCGACGTGGTGTCGGCCATGGTGGCCATCGCTCTTATGGGAACT 7860130 Query 217 GCCACGGGTCAACTAGTCTTCGGTTACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTAC 276 || | || ||| | || ||||| | || || |||||||||||| | || || |||||| Sbjct 7860129 GCGATCGGCCAAGTGGTTTTCGGCTGGCTGGGCGACCGAGTCGGTAGGCGGCGCGTCTAC 7860070 Query 277 GGACTTTGTTTGATTATTATGATCCTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACC 336 || | |||||| || ||| |||| ||||| || ||||| || || ||| | |||| Sbjct 7860069 GGGATCGCTTTGATGATCATGGTCCTAAGCTCTTTCGGTTGCGGGTTCTCCTTCTGCA-- 7860012 Query 337 ACTCGTCGGTCTTGTGTTATGGTTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGT 396 | | || || | ||| ||| ||||| || | ||| ||||| || || | || Sbjct 7860011 AGGAGAGGGGCT-GCGTTCTGGCGAGCCTGGGACTATTCAGGTTCGCACTGGGCCTGGGG 7859953 Query 397 ATCGGTGGTGATTACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACA 456 || || || || ||||| || ||||| ||| ||||||||||| || || |||| |||| Sbjct 7859952 ATTGGCGGGGACTACCCTCTGTCGGCAGTCATAATGTCGGAGTTAGCGAACAAGATGACA 7859893 Query 457 CGTGGCGCGTTTATCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGG 508 || || || || || || || ||||| |||||||| || || |||||||||| Sbjct 7859892 CGCGGAGCTTTCATAGCGGCCGTGTTCTCGATGCAGGGATTTGGGATTTTGG 7859841 Score = 150 bits (166), Expect = 3e-34 Identities = 332/492 (67%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 867 CTCCTTTAATTGGTTCCTAGTAGACATTGTCTTCTACACAAGCAACCTCCTCCTGTCCCA 926 |||| | | |||||| || | ||||||||||| |||| ||||||||| ||| ||| || Sbjct 7859343 CTCCGTCACTTGGTTTCTTCTCGACATTGTCTTTTACAGCAGCAACCTCTTCCAGTCTCA 7859284 Query 927 TATCTTC-AGTCATTACTCCAAGAAACCTTCCACTGCAGA-AAACGTCTACGACGCAGCC 984 || | | || | | || || | | ||| | ||| | ||| | | ||| Sbjct 7859283 GATATACGAGCCCTATCTTATGGACAA-----AGAGCATACAAATGCCTATAAAGAAGCT 7859229 Query 985 TTTGAAGTGGCGGAATTAGGAGCCATCATCGCTGCTTGCTCCACCATTCCCGGTTATTGG 1044 || |||| || || | ||| |||||||| || || ||||||||||| || || ||| Sbjct 7859228 TTCGAAGCAGCAAAACTCCAAGCAATCATCGCAGCCTGTTCCACCATTCCTGGCTACTGG 7859169 Query 1045 TTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAGATTATGGGGTTTTTC 1104 ||| | || | || || || | || || | |||| |||||| ||||| ||| || Sbjct 7859168 TTCGCTGTCTGGTTTATTGATATCATTGGAAGAGTCAGAATCCAAGCAATGGGTTTTCTC 7859109 Query 1105 TTCATGGCCGTTATTTATTTAGTCGCTGGTATTCCGTACAGTTGGTATTGGTCAAAGCAC 1164 | |||||| | ||||| | | ||| || || ||| |||||| ||| | Sbjct 7859108 TGCATGGCACTGGTTTATCTTGCAATTGGAATACCCTACGACATATATTGG---AAG-AA 7859053 Query 1165 GAGCATAATAATAAAGGCTTCATGGTTCTCTACGGTTTGGTTTTCTTCTTTTGCAATTTT 1224 |||| || || |||| |||||||| ||||| || | || |||||| ||||| Sbjct 7859052 GAGC--AAAAACCAAGGTTTCATGGTCCTCTATGGCCTCACCTTTTTCTTTGCAAATTTC 7858995 Query 1225 GGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTCCCGGCTAGGTTTAGGTCT 1284 || || ||||| || || || || | ||||| |||| ||||| || || ||||| | Sbjct 7858994 GGACCAAACACAACCACCTTCATAGTGCCCGCGGAGCTCTTCCCAGCAAGATTTAGAACA 7858935 Query 1285 ACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGG 1344 || || | || || ||||| ||||| || ||||| ||||| || | || ||||||| Sbjct 7858934 ACATGCAATGGAATTTCTGGGGCCGCAGGGAAGCTGGGGGCAATCATTGGTTCTGTTGGA 7858875 Query 1345 TTCTTGTGGGCT 1356 || ||||||||| Sbjct 7858874 TTTTTGTGGGCT 7858863 Score = 60.8 bits (66), Expect = 4e-07 Identities = 65/86 (76%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 604 GCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGA 663 || ||||| | || | ||| | ||||| |||| ||||| || || || ||||||||| Sbjct 7859748 GCATGGAGGGTGATCTTAATGGTTGGTGCGATTCCAGCTGCGTTAACATTTTATTGGCGA 7859689 Query 664 ATGTTGATGCCTGAAACCGCAAGATA 689 ||| ||||||| ||||| || || || Sbjct 7859688 ATGATGATGCCCGAAACTGCCAGGTA 7859663 Score = 37.4 bits (40), Expect = 4.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 694 GCACTTGTAGAAAACAATATCGTCCAAGCA 723 ||| ||| |||| |||| |||||||||||| Sbjct 24491791 GCATTTGGAGAACACAAAATCGTCCAAGCA 24491820 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 129 bits (142), Expect = 1e-27 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 350 GTGTTATGGTTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATT 409 |||| |||| | ||| |||| ||||| || | ||||| || |||||||||||||| | Sbjct 39556866 GTGTCATGGCCACACTCTGTTTCTTCCGATTTTGGCTTGGCTTTGGTATCGGTGGTGACT 39556807 Query 410 ACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTA 469 |||| || || ||||| || ||||| || | ||| || || | ||| ||||| ||||||| Sbjct 39556806 ACCCCCTTTCTGCTACAATCATGTCTGAATATGCCAACAAAAAGACTCGTGGGGCGTTTA 39556747 Query 470 TCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGG 508 | || ||||| ||| | ||||||||||| || ||||||| Sbjct 39556746 TAGCAGCGGTTTTTGCCATGCAAGGGTTTGGAATTTTGG 39556708 Score = 114 bits (126), Expect = 2e-23 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 348 TTGTGTTATGGTTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGA 407 || |||||||| || | | || ||| |||||| || || || || || || ||||| Sbjct 39515693 TTCTGTTATGGCTACATTATGCTTCTTCAGGTTCTGGCTCGGCTTTGGCATTGGAGGTGA 39515634 Query 408 TTACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTT 467 |||||||| || || || || ||||| |||| |||||| || | ||| ||||| || || Sbjct 39515633 CTACCCGCTTTCTGCCACTATCATGTCTGAGTATGCTAACAAAAAGACCCGTGGAGCCTT 39515574 Query 468 TATCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGG 508 ||||||||| |||||| | |||||||| || || ||| ||| Sbjct 39515573 TATCGCTGCAGTGTTTGCAATGCAAGGTTTTGGAATTCTGG 39515533 Score = 105 bits (116), Expect = 1e-20 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 350 GTGTTATGGTTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATT 409 |||| |||| | ||| |||| |||||||||| ||||| || || || || ||||| | Sbjct 39548378 GTGTCATGGCCACGCTCTGTTTCTTCCGGTTCTGGCTTGGCTTTGGCATTGGCGGTGACT 39548319 Query 410 ACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTA 469 | || || || ||||| || ||||| || | ||| || || | ||| || || || |||| Sbjct 39548318 ATCCCCTTTCAGCTACAATCATGTCTGAATATGCCAACAAAAAGACTCGCGGGGCTTTTA 39548259 Query 470 TCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTG 507 ||||||| || ||| | |||||||| || || | |||| Sbjct 39548258 TCGCTGCAGTTTTTGCCATGCAAGGCTTTGGAAATTTG 39548221 Score = 71.6 bits (78), Expect = 2e-10 Identities = 71/92 (77%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 25 CTTGATGTAGCTCGAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGT 84 |||||||| || |||||||||||||||||||| ||| || | | || || ||||| Sbjct 39516031 CTTGATGTTGCCAAAACACAATGGTACCATTTCACAGCAATTGTGATCGCTGGCATGGGC 39515972 Query 85 CTATTCACCGACGCATACGATCTTTTCTGCAT 116 | ||||| || ||||| ||||| || ||||| Sbjct 39515971 TTTTTCACTGATGCATATGATCTCTTTTGCAT 39515940 Score = 69.8 bits (76), Expect = 8e-10 Identities = 92/128 (72%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 || ||||| |||||||||||| || | || ||||| | | || |||||| |||| Sbjct 39514831 TTTTTCTTCGCCAATTTTGGTCCAAATGCAACTACTTTCGTGGTCCCTGCAGAGATTTTC 39514772 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGGCT 1326 || || ||| | ||||| || ||||| || || || | ||| || || ||| |||||| Sbjct 39514771 CCAGCAAGGCTAAGGTCAACATGTCATGGTATATCAGCTGCAGCCGGAAAGGCTGGGGCA 39514712 Query 1327 ATTGTGGG 1334 || || || Sbjct 39514711 ATAGTTGG 39514704 Score = 69.8 bits (76), Expect = 8e-10 Identities = 92/128 (72%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 |||||||| || ||||| || || | || || |||||| | || ||||| |||| Sbjct 39547512 TTCTTCTTCGCAAACTTTGGGCCAAATGCAACCACGTTTATTTTGCCAGCAGAAATTTTC 39547453 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGGCT 1326 || || ||| | |||||||||||||| || || || | ||| || || ||| ||| || Sbjct 39547452 CCCGCAAGGCTAAGGTCTACTTGTCATGGAATATCAGCTGCAGCCGGAAAGGCTGGAGCC 39547393 Query 1327 ATTGTGGG 1334 || || || Sbjct 39547392 ATCGTTGG 39547385 Score = 68.0 bits (74), Expect = 3e-09 Identities = 61/77 (79%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 40 ACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCA 99 || |||||||||||||||| || ||| | | || |||||||| | ||||| || ||| Sbjct 39548703 ACCCAATGGTACCATTTCACGGCAATCGTGATTGCCGGAATGGGGTTTTTCACGGATGCA 39548644 Query 100 TACGATCTTTTCTGCAT 116 || || ||||||||||| Sbjct 39548643 TATGACCTTTTCTGCAT 39548627 Score = 68.0 bits (74), Expect = 3e-09 Identities = 118/172 (69%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1180 GGCTTCATGGTTCTCTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACA 1239 |||||| | | |||||| ||| || ||||| ||| || |||||||| | || Sbjct 39556027 GGCTTCGTCATAATCTACGCCTTGACCTTTTTCTTCGCCAACTTCGGTCCCAATTCCACC 39555968 Query 1240 ACTTTTATTATTCCCGCAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATC 1299 ||||||||| | || || || ||||| || ||| | |||||||| ||||| || || Sbjct 39555967 ACTTTTATTGTGCCAGCGGAAATCTTCCCTGCAAGGCTAAGGTCTACCTGTCATGGAATA 39555908 Query 1300 TCTGGTGCCGCGGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGT 1351 || | || || ||| || ||||| || || | |||||||||||| Sbjct 39555907 TCAGCGGCATGTGGGAAGGCGGGAGCTATAGTTGGGGCGTTTGGGTTCTTGT 39555856 Score = 68.0 bits (74), Expect = 3e-09 Identities = 61/77 (79%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 40 ACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCA 99 || |||| ||||||||||| || || || | || |||||||| | ||||| || ||| Sbjct 39557191 ACTCAATTGTACCATTTCACGGCAATTGTAATTGCCGGAATGGGCTTTTTCACAGATGCA 39557132 Query 100 TACGATCTTTTCTGCAT 116 |||||||| |||||||| Sbjct 39557131 TACGATCTGTTCTGCAT 39557115 Score = 46.4 bits (50), Expect = 0.009 Identities = 81/117 (69%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 584 CTCCGACGGAAGCTGACTTGGCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTG 643 |||| | |||||||| | | ||| | | || | ||| ||||||| | || |||| Sbjct 39515445 CTCCTCCAGAAGCTGATTATGTTTGGCGCATAATTGTAATGTTCGGTGCCGTGCCAGCTG 39515386 Query 644 CATTGACGTTCTATTGGCGAATGTTGATGCCTGAAACCGCAAGATACACAGCACTTG 700 | | || | || ||||| ||| ||||||||||| || ||||||| || |||| Sbjct 39515385 CTCTTACTTATTACTGGCGCATGAAAATGCCTGAAACTGCTCGATACACTGC-CTTG 39515330 Score = 42.8 bits (46), Expect = 0.11 Identities = 56/78 (72%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 1033 CCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAGATT 1092 || || |||||||| || || ||||| || ||||| || | || ||| || | Sbjct 39514999 CCAGGATATTGGTTTACCGTGGCTTTCATTGATAAGATTGGGAGGTTCGCAATACAATTG 39514940 Query 1093 ATGGGGTTTTTCTTCATG 1110 ||||| |||||||||||| Sbjct 39514939 ATGGGTTTTTTCTTCATG 39514922 Score = 37.4 bits (40), Expect = 4.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 694 GCACTTGTAGAAAACAATATCGTCCAAGCA 723 ||| ||| |||| |||| |||||||||||| Sbjct 18557449 GCATTTGGAGAACACAAAATCGTCCAAGCA 18557420 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 123 bits (136), Expect = 4e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 351 TGTTATGGTTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTA 410 ||||||| | ||| | || || ||||||| |||||||| || ||||||||||| || Sbjct 35673934 TGTTATGAGCACCCTTTGCTTCTTTCGGTTCTGGCTTGGTTTTGGCATCGGTGGTGACTA 35673993 Query 411 CCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTAT 470 ||| || || |||||||||||||| || | ||| || |||| ||| ||||| || || || Sbjct 35673994 CCCACTTTCTGCTACCATTATGTCCGAATATGCAAACAAGAAGACTCGTGGAGCCTTCAT 35674053 Query 471 CGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTT 506 ||||| |||||| | ||||| || || || ||||| Sbjct 35674054 TGCTGCAGTGTTTGCCATGCAGGGCTTTGGCATTTT 35674089 Score = 118 bits (130), Expect = 2e-24 Identities = 482/751 (64%), Gaps = 49/751 (7%) Strand=Plus/Plus Query 23 CGCTTGATGTAGCTCGAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGG 82 |||| ||| |||| |||||||||||| ||||| | | ||| | | || ||||||| Sbjct 35667146 CGCTCGATCTAGCAAAAACACAATGGTATCATTTTACTACAATCGTCATTGCTGGAATGG 35667205 Query 83 GTCTATTCACCGACGCATACGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAGTC 142 | | |||||||| ||||| ||||||||||||||| | | |||| ||| || || | | Sbjct 35667206 GGTTCTTCACCGATGCATATGATCTTTTCTGCATATCTCTTGTCACCAAATTGCTTGGCC 35667265 Query 143 ATGTTTATTACAACGGTGACTCAATCAACACAGCC--GTTCTTT------CAACTTCTTA 194 | |||||| | | || | || || |||| | |||| |||| ||| Sbjct 35667266 GCATATATTACCATGTCGA-TGGCGCAGCAAAGCCTGGAACTTTGCCTCCCAACGTCT-- 35667322 Query 195 CGCCATCGCTTTA----------CTC---GGCAC---AGCCACGGGTCAACTAGTCTTCG 238 || || | || | ||| || || |||| || ||||| |||| | Sbjct 35667323 CGGCAGCTGTTAATGGCGTAGCACTCTGTGGAACTCTAGCC---GGCCAACTTTTCTTTG 35667379 Query 239 GTTACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGA 298 | | || || ||| | || | ||||||||||| | | | || | ||| Sbjct 35667380 GGTGGCTTGGAGACAAGATGGGCAGGAAGCGAGTCTACGGCATGACTCTCATGCTCATGG 35667439 Query 299 TCCTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGG 358 | | |||| ||| || ||| ||||| | ||| || | |||| || |||| Sbjct 35667440 TTATAGCCTCCGTTGCTTCTGGTCTTTCCTTTGGCAGCAATGCAAAGTCT---GTCATGG 35667496 Query 359 TTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCT 418 | ||| | ||||||||||||| ||||| || ||||| || || |||||||| || | Sbjct 35667497 CAACACTCTGCTTTTTCCGGTTCTGGCTTGGGTTTGGTATTGGCGGAGATTACCCTCTTT 35667556 Query 419 CGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGG 478 | || ||||| |||||||| | ||| || |||| ||| ||||| || || || ||||| | Sbjct 35667557 CCGCCACCATCATGTCGGAATATGCCAACAAGAAGACCCGTGGTGCTTTCATTGCTGCCG 35667616 Query 479 TGTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGCTGTTTGCG 538 | || | ||||| || || || || || | | || | | | || | |||| Sbjct 35667617 TCTTCGCCATGCAGGGATTTGGCATCTTAGCTGGCGGTATATTTGCTAT-TATTATTGCA 35667675 Query 539 T-GGCGTTTAAGAGAAG------TGGCGGTGGTTTGGAGGTGGATGC-GGCGGCTCCGAC 590 | || || ||| || || | || ||||| ||||| | |||| | || Sbjct 35667676 TCTGCATTCAAGTCCAGGTTTGATGTCCCATCTTATGAGGTTGATGCAGTTGGCT-CAAC 35667734 Query 591 GG------AAGCTGACTTGGCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGC 644 | |||| |||| | ||||| |||| | ||| | ||||| ||||||||||| Sbjct 35667735 TGTTCCACAAGCAGACTATGTTTGGAGGATTATCTTAATGGTTGGTGCACTTCCTGCTGC 35667794 Query 645 ATTGACGTTCTATTGGCGAATGTTGATGCCTGAAACCGCAAGATACACAGCACTTGTAGA 704 | | || | ||| ||| | ||| |||||||||||| || | ||||| || ||||| | Sbjct 35667795 ACTCACCTACTACTGGAGGATGAAGATGCCTGAAACTGCCCGTTACACTGCCCTTGTTGC 35667854 Query 705 AAACAATATCGTCCAAGCAGCAAAAGACATG 735 || ||| ||| || |||||||| ||| Sbjct 35667855 CAAGAATGCAAACCAGGCTGCAAAAGATATG 35667885 Score = 91.5 bits (100), Expect = 2e-16 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 ||||||||| ||||| || || || | || || ||| | | || || ||| |||| Sbjct 35668354 TTCTTCTTTGCGAATTTCGGGCCTAATTCCACCACATTTGTCGTGCCAGCTGAGATTTTC 35668413 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGGCT 1326 ||||| ||| | ||||||||||| || || || |||| || | || ||||| |||||| Sbjct 35668414 CCGGCCAGGCTAAGGTCTACTTGCCATGGCATATCTGCAGCATCTGGGAAGCTCGGGGCT 35668473 Query 1327 ATTGTGGGCACTGTTGGGTTCTTGT 1351 ||||| || || ||||||| |||| Sbjct 35668474 ATTGTTGGTGCTTTTGGGTTTTTGT 35668498 Score = 82.4 bits (90), Expect = 1e-13 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 ||||||||| ||||| || ||||| | || || ||| | | || || ||| |||| Sbjct 35674799 TTCTTCTTTGCAAATTTCGGGCCCAATGCCACCACATTTGTCGTGCCAGCTGAGATTTTC 35674858 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGGCT 1326 ||||| ||| | ||||||||||| || || || |||| || | || |||||||| ||| Sbjct 35674859 CCGGCCAGGCTGAGGTCTACTTGCCATGGCATATCTGCAGCATCAGGAAAGCTTGGAGCT 35674918 Query 1327 ATTGTGGGCACTGTTGGGTTCTTGT 1351 || || || | | || ||||||| Sbjct 35674919 ATGGTTGGAGCATTCGGTTTCTTGT 35674943 Score = 77.0 bits (84), Expect = 5e-12 Identities = 90/122 (74%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 614 TTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTTGATGC 673 |||| || ||| | |||||||||||||||||| | || | ||| ||| | ||| ||||| Sbjct 35674209 TTATTCTGATGGTTGGTGCTCTTCCTGCTGCACTCACCTACTACTGGAGGATGAAGATGC 35674268 Query 674 CTGAAACCGCAAGATACACAGCACTTGTAGAAAACAATATCGTCCAAGCAGCAAAAGACA 733 ||||||| || | ||||| || ||||| | || ||| ||| || ||||| || | Sbjct 35674269 CTGAAACTGCCCGTTACACTGCCCTTGTTGCCAAGAATGCAAACCAGGCTGCAAATGATA 35674328 Query 734 TG 735 || Sbjct 35674329 TG 35674330 Score = 55.4 bits (60), Expect = 2e-05 Identities = 85/119 (71%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1027 ACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATC 1086 ||| |||| || || ||||||||||| || || |||||||| || | || ||| Sbjct 35668180 ACCGTTCCAGGCTACTGGTTCACAGTGGCTTTAATTGACAAGATGGGAAGGTTCGCTATC 35668239 Query 1087 CAGATTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTCGCTGG-TATTCCGTACA 1144 || | ||||| || ||||||||| | | | ||||| | | |||| |||||| |||| Sbjct 35668240 CAATTGATGGGATTCTTCTTCATGACAG-TGTTTATGTTTGCCCTGGCTATTCCTTACA 35668297 Score = 46.4 bits (50), Expect = 0.009 Identities = 58/80 (73%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1031 TTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAGA 1090 |||| || || ||||||||||| || || |||||||| || | || ||||| Sbjct 35674629 TTCCAGGCTACTGGTTCACAGTGGCTTTGATTGACAAGATGGGAAGGTTCGCCATCCAAC 35674688 Query 1091 TTATGGGGTTTTTCTTCATG 1110 | ||||| || ||||||||| Sbjct 35674689 TAATGGGTTTCTTCTTCATG 35674708 Score = 37.4 bits (40), Expect = 4.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 694 GCACTTGTAGAAAACAATATCGTCCAAGCA 723 ||| ||| |||| |||| |||||||||||| Sbjct 26102438 GCATTTGGAGAACACAAAATCGTCCAAGCA 26102409 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 120 bits (132), Expect = 5e-25 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 368 GTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCA 427 |||| || ||||| | ||||| || || || || ||||| ||||| || || || |||| Sbjct 41809421 GTTTCTTTCGGTTTTGGCTTGGATTTGGCATAGGGGGTGACTACCCACTTTCTGCAACCA 41809480 Query 428 TTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGA 487 ||||||| || | ||||||||||| ||| ||||| || || || || || |||||| | | Sbjct 41809481 TTATGTCTGAATATGCTAATAAGAAGACTCGTGGAGCCTTCATTGCAGCAGTGTTTGCCA 41809540 Query 488 TGCAAGGGTTGGGGATTTTGG 508 |||||||||| || ||||||| Sbjct 41809541 TGCAAGGGTTTGGCATTTTGG 41809561 Score = 107 bits (118), Expect = 3e-21 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 370 TTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCATT 429 ||||||||||||| ||||| || |||||||| ||||| ||||| || || || ||||| Sbjct 41804624 TTTTTCCGGTTCTGGCTTGGGTTTGGTATCGGCGGTGACTACCCACTTTCCGCCACCATC 41804683 Query 430 ATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGATG 489 ||||| || | ||||||||||| ||| ||||| || || || || || || || | ||| Sbjct 41804684 ATGTCCGAATATGCTAATAAGAAGACTCGTGGTGCTTTCATTGCCGCAGTCTTCGCCATG 41804743 Query 490 CAAGGGTTGGGGAT 503 || || || || || Sbjct 41804744 CAGGGATTTGGAAT 41804757 Score = 96.9 bits (106), Expect = 6e-18 Identities = 217/322 (67%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 1031 TTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAGA 1090 |||| || || ||||| ||||| ||||| ||||||||||| | | ||||| Sbjct 41805300 TTCCAGGCTACTGGTTTACAGTGGCTTTCATTGACAAGATAGGAAGATTTGCTATCCAAT 41805359 Query 1091 TTATGGGGTTTTTCTTCATGGCCGTTATTTATTTAGTCGCTGG-TATTCCGTACAGTTGG 1149 | ||||| || ||||||||| | || ||||| | | |||| |||||| |||| Sbjct 41805360 TGATGGGTTTCTTCTTCATGACAGTG-TTTATGTTTGCCCTGGCTATTCCTTACAACC-- 41805416 Query 1150 TATTGGTCAAAGCACGAGCATAATAATAAAGGCTTCATGGTTCTCTACGGTTTGGTTTTC 1209 | ||| | ||| || ||||| | || || |||| | || | ||| Sbjct 41805417 -ACTGGACT---CACAAGGATAATCGCATTGGGTTTGTGGTGATGTATTCCCTCACCTTC 41805472 Query 1210 TTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTCCCG 1269 |||||| |||||||| || || | || || ||| | | || || ||| ||||| Sbjct 41805473 TTCTTTGCAAATTTTGGGCCTAATGCCACCACATTTGTCGTGCCGGCGGAGATCTTCCCA 41805532 Query 1270 GCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGGCTATT 1329 |||||| | ||||||||||| || || ||||| | || | || ||||| ||||||||| Sbjct 41805533 GCTAGGCTCAGGTCTACTTGCCATGGCATCTCGGCAGCATCCGGGAAGCTCGGGGCTATT 41805592 Query 1330 GTGGGCACTGTTGGGTTCTTGT 1351 || || || ||||||| |||| Sbjct 41805593 GTTGGTGCTTTTGGGTTTTTGT 41805614 Score = 91.5 bits (100), Expect = 2e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 25 CTTGATGTAGCTCGAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGT 84 || |||||||| |||||||||||| ||||||| || ||||| | || |||||||| Sbjct 41804264 CTCGATGTAGCAAAAACACAATGGTATCATTTCACTGCTATCATCATTGCAGGAATGGGG 41804323 Query 85 CTATTCACCGACGCATACGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAGTC 142 | |||||||| ||||| ||||| ||||||||| | | |||| ||| || || ||| Sbjct 41804324 TTCTTCACCGATGCATATGATCTATTCTGCATATCTCTTGTCACCAAATTGCTTGGTC 41804381 Score = 66.2 bits (72), Expect = 1e-08 Identities = 80/109 (73%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 593 AAGCTGACTTGGCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGT 652 |||| ||||| | ||||| | || || ||| | || || || || |||||| |||| | Sbjct 41804859 AAGCAGACTTTGTTTGGAGGATCATTCTAATGGTAGGAGCACTCCCAGCTGCACTGACTT 41804918 Query 653 TCTATTGGCGAATGTTGATGCCTGAAACCGCAAGATACACAGCACTTGT 701 ||| ||| | ||| |||||||||||| || | ||||| || ||||| Sbjct 41804919 ACTACTGGAGGATGAAGATGCCTGAAACTGCCCGTTACACTGCCCTTGT 41804967 Score = 41.0 bits (44), Expect = 0.39 Identities = 35/42 (83%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 784 CCACCTCCTCCTCCGCCGCCACCTTC-CTACAAACTCTTCTC 824 |||||||||||||| || |||||| | |||| |||||||| Sbjct 39996760 CCACCTCCTCCTCCACCTCCACCTCCTCTACTCTCTCTTCTC 39996719 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 781 GATCCACCTCCTCCTCCGCCGCCACC 806 || |||||||||||||||||| |||| Sbjct 17819859 GACCCACCTCCTCCTCCGCCGTCACC 17819834 Score = 37.4 bits (40), Expect = 4.8 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 278 GACTTTGTTTGATTATTATGATCCTTAGCTCCTT 311 || || |||||| |||||||||||||| ||||| Sbjct 3145493 GATTTAGTTTGAATATTATGATCCTTA--TCCTT 3145524 Score = 37.4 bits (40), Expect = 4.8 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 843 CCATGGTCGCGACCTCTTCG 862 |||||||||||||||||||| Sbjct 18524575 CCATGGTCGCGACCTCTTCG 18524556 Score = 37.4 bits (40), Expect = 4.8 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 278 GACTTTGTTTGATTATTATGATCCTTAGCTCCTT 311 || || |||||| |||||||||||||| ||||| Sbjct 27845438 GATTTAGTTTGAATATTATGATCCTTA--TCCTT 27845407 Score = 37.4 bits (40), Expect = 4.8 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 1180 GGCTTCATGGTTCTCTACGGTTTGGTTTTCTTCTTTTGCA 1219 ||||||||||| || | ||||||||| || | |||||| Sbjct 41269597 GGCTTCATGGTGGTCAAGGGTTTGGTTCTCGCCATTTGCA 41269558 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 104 bits (114), Expect = 4e-20 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 368 GTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCA 427 |||||||| |||||| ||||| || || || || || |||||||| || || || || | Sbjct 33909095 GTTTTTTCAGGTTCTGGCTTGGGTTTGGCATTGGCGGAGATTACCCACTGTCTGCAACTA 33909036 Query 428 TTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGA 487 | ||| |||||| |||||| |||| || || || || ||||| ||||| || || | | Sbjct 33909035 TCATGGCGGAGTATGCTAACAAGAAAACTCGGGGGGCTTTTATTGCTGCAGTTTTCGCCA 33908976 Query 488 TGCAAGGGTTGGGGATTTTG 507 |||||||||| || ||| || Sbjct 33908975 TGCAAGGGTTTGGCATTCTG 33908956 Score = 102 bits (112), Expect = 1e-19 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 368 GTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCA 427 |||||||| |||||| ||||| || || || || || |||||||| || || || || | Sbjct 33880824 GTTTTTTCAGGTTCTGGCTTGGGTTTGGAATTGGCGGAGATTACCCACTGTCTGCAACTA 33880765 Query 428 TTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGA 487 | ||| | |||| |||||| |||| || || || || ||||| ||||| || || | | Sbjct 33880764 TCATGGCCGAGTATGCTAACAAGAAAACTCGGGGGGCTTTTATTGCTGCAGTTTTCGCCA 33880705 Query 488 TGCAAGGGTTGGGGATTTTGG 508 |||||||||| || ||| ||| Sbjct 33880704 TGCAAGGGTTTGGCATTCTGG 33880684 Score = 96.9 bits (106), Expect = 6e-18 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 368 GTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCA 427 |||||||| |||||| ||||| || || || || || |||||||| || || || || | Sbjct 33895881 GTTTTTTCAGGTTCTGGCTTGGGTTTGGAATTGGCGGAGATTACCCACTGTCTGCAACTA 33895822 Query 428 TTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGA 487 | ||| | |||| |||||| |||| || || || || || || ||||| || || | | Sbjct 33895821 TCATGGCCGAGTATGCTAACAAGAAAACTCGGGGGGCTTTAATTGCTGCAGTTTTCGCCA 33895762 Query 488 TGCAAGGGTTGGGGATTTTGG 508 |||||||||| || ||| ||| Sbjct 33895761 TGCAAGGGTTTGGCATTCTGG 33895741 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 34 GCTCGAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACC 93 ||||| |||||||||||||| ||| || ||||| | || |||||||| | ||||| Sbjct 37739993 GCTCGCACACAATGGTACCACATCACTGCTATCATCATCGCCGGAATGGGGTTTTTCACT 37740052 Query 94 GACGCATACGATCTTTTCTGCAT 116 || |||||||| ||||||||||| Sbjct 37740053 GATGCATACGACCTTTTCTGCAT 37740075 Score = 73.4 bits (80), Expect = 7e-11 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 1031 TTCCC-GGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAG 1089 ||||| ||||| |||||||| || | ||||||||| ||| |||| || |||| ||||| Sbjct 37741010 TTCCCTGGTTACTGGTTCACCGTGTTCTTCATCGAGAAGCTAGGACGGTTCAAGATCCAA 37741069 Query 1090 ATTATGGGGTTTTTCTTCATGGCCG 1114 | |||||||||||| | ||| ||| Sbjct 37741070 CTCATGGGGTTTTTCATGATGTCCG 37741094 Score = 71.6 bits (78), Expect = 2e-10 Identities = 105/146 (72%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 |||||||| |||||| || || || | || || || ||| | || || ||| |||| Sbjct 33908238 TTCTTCTTCGCCAATTTCGGGCCAAATAGCACTACATTCATTGTACCGGCGGAGATTTTC 33908179 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGC-GGGTAAGCTTGGGGC 1325 ||||||||| || | || || || || || || || | || || ||| |||| || || Sbjct 33908178 CCGGCTAGGCTTCGATCAACATGCCATGGTATTTCAGCAGCTGCAGGGAAAGC-AGGTGC 33908120 Query 1326 TATTGTGGGCACTGTTGGGTTCTTGT 1351 || ||||| || |||||||||||| Sbjct 33908119 AATAGTGGGATCTTTTGGGTTCTTGT 33908094 Score = 68.0 bits (74), Expect = 3e-09 Identities = 104/146 (71%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 |||||||| |||||| || || || | || || || ||| | || || ||| |||| Sbjct 33879967 TTCTTCTTCGCCAATTTCGGGCCAAATAGCACTACATTCATTGTGCCGGCGGAGATTTTC 33879908 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGC-GGGTAAGCTTGGGGC 1325 ||||| ||| || | || || || || || || || | || || ||| |||| || || Sbjct 33879907 CCGGCGAGGCTTCGATCAACATGCCATGGTATTTCAGCAGCTGCAGGGAAAGCA-GGTGC 33879849 Query 1326 TATTGTGGGCACTGTTGGGTTCTTGT 1351 || ||||| || |||||||||||| Sbjct 33879848 AATAGTGGGATCTTTTGGGTTCTTGT 33879823 Score = 68.0 bits (74), Expect = 3e-09 Identities = 104/146 (71%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 |||||||| |||||| || || || | || || || ||| | || || ||| |||| Sbjct 33895024 TTCTTCTTCGCCAATTTCGGGCCAAATAGCACTACATTCATTGTGCCGGCGGAGATTTTC 33894965 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGC-GGGTAAGCTTGGGGC 1325 ||||| ||| || | || || || || || || || | || || ||| |||| || || Sbjct 33894964 CCGGCGAGGCTTCGATCAACATGCCATGGTATTTCAGCAGCTGCAGGGAAAGCA-GGTGC 33894906 Query 1326 TATTGTGGGCACTGTTGGGTTCTTGT 1351 || ||||| || |||||||||||| Sbjct 33894905 AATAGTGGGATCTTTTGGGTTCTTGT 33894880 Score = 64.4 bits (70), Expect = 3e-08 Identities = 62/80 (78%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 616 ATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTTGATGCCT 675 || || ||| ||||||| ||||||||||| |||| | |||||||| ||| ||||| Sbjct 33880564 ATTCTCATGTTCGGTGCAGTTCCTGCTGCAATGACTTATTATTGGCGCATGAAAATGCCG 33880505 Query 676 GAAACCGCAAGATACACAGC 695 |||||| | ||||||| || Sbjct 33880504 GAAACCCCTCGATACACTGC 33880485 Score = 64.4 bits (70), Expect = 3e-08 Identities = 62/80 (78%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 616 ATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTTGATGCCT 675 || || ||| ||||||| ||||||||||| |||| | |||||||| ||| ||||| Sbjct 33895621 ATTCTCATGTTCGGTGCAGTTCCTGCTGCAATGACTTATTATTGGCGCATGAAAATGCCG 33895562 Query 676 GAAACCGCAAGATACACAGC 695 |||||| | ||||||| || Sbjct 33895561 GAAACCCCTCGATACACTGC 33895542 Score = 60.8 bits (66), Expect = 4e-07 Identities = 74/101 (73%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 595 GCTGACTTGGCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTC 654 || |||| || ||| | | || || ||| |||| || ||||||||||| |||| | Sbjct 33908856 GCGGACTATGCATGGCGGATCATTCTCATGTTCGGCGCAGTTCCTGCTGCAATGACTTAT 33908797 Query 655 TATTGGCGAATGTTGATGCCTGAAACCGCAAGATACACAGC 695 |||||||| ||| ||||| |||||| | ||||||| || Sbjct 33908796 TATTGGCGCATGAAAATGCCGGAAACCCCTCGATACACTGC 33908756 Score = 55.4 bits (60), Expect = 2e-05 Identities = 62/83 (75%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 34 GCTCGAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACC 93 || || ||||||||||||||| ||| | || | | || || |||||| | ||||| Sbjct 37725699 GCCCGTACACAATGGTACCATATCACCACCATTGTCATTGCCGGGATGGGTTTTTTCACA 37725758 Query 94 GACGCATACGATCTTTTCTGCAT 116 || ||||| || ||||| ||||| Sbjct 37725759 GATGCATATGACCTTTTTTGCAT 37725781 Score = 48.2 bits (52), Expect = 0.003 Identities = 55/74 (74%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 607 TGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATG 666 |||||| || | || ||||| || || |||| || || || | ||||||||||||| Sbjct 37740590 TGGAGAATTGTTCTCATGATAGGAGCCGTTCCGGCGCTCTTAACTTACTATTGGCGAATG 37740649 Query 667 TTGATGCCTGAAAC 680 ||||||||||| Sbjct 37740650 AAAATGCCTGAAAC 37740663 Score = 39.2 bits (42), Expect = 1.4 Identities = 44/59 (75%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 73 GCGGGAATGGGTCTATTCACCGACGCATACGATCTTTTCTGCATAGCACCGGTCATGAA 131 || || ||||| | |||||||| | ||||||||||||| || | | ||||| ||| Sbjct 33881134 GCCGGCATGGGGTTCTTCACCGATTCCTACGATCTTTTCTCTATTTCCCTGGTCACGAA 33881076 Score = 39.2 bits (42), Expect = 1.4 Identities = 44/59 (75%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 73 GCGGGAATGGGTCTATTCACCGACGCATACGATCTTTTCTGCATAGCACCGGTCATGAA 131 || || ||||| | |||||||| | ||||||||||||| || | | ||||| ||| Sbjct 33896191 GCCGGCATGGGGTTCTTCACCGATTCCTACGATCTTTTCTCTATTTCCCTGGTCACGAA 33896133 Score = 39.2 bits (42), Expect = 1.4 Identities = 44/59 (75%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 73 GCGGGAATGGGTCTATTCACCGACGCATACGATCTTTTCTGCATAGCACCGGTCATGAA 131 || || ||||| | |||||||| | ||||||||||||| || | | ||||| ||| Sbjct 33909405 GCCGGCATGGGGTTCTTCACCGATTCCTACGATCTTTTCTCTATTTCCCTGGTCACGAA 33909347 Score = 37.4 bits (40), Expect = 4.8 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1207 TTCTTCTTTTGCAATTTTGGTCC 1229 |||||||||| |||||||||||| Sbjct 6160637 TTCTTCTTTTTCAATTTTGGTCC 6160659 Score = 37.4 bits (40), Expect = 4.8 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1084 ATCCAGATTATGGGGTTTTTCTTCATGGCCGTT 1116 || ||||| || ||||||||||||||| | ||| Sbjct 33880084 ATTCAGATAATTGGGTTTTTCTTCATGTCAGTT 33880052 Score = 37.4 bits (40), Expect = 4.8 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1084 ATCCAGATTATGGGGTTTTTCTTCATGGCCGTT 1116 || ||||| || ||||||||||||||| | ||| Sbjct 33895141 ATTCAGATAATTGGGTTTTTCTTCATGTCAGTT 33895109 Score = 37.4 bits (40), Expect = 4.8 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1084 ATCCAGATTATGGGGTTTTTCTTCATGGCCGTT 1116 || ||||| || ||||||||||||||| | ||| Sbjct 33908355 ATTCAGATAATTGGGTTTTTCTTCATGTCAGTT 33908323 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 104 bits (114), Expect = 4e-20 Identities = 328/500 (66%), Gaps = 25/500 (5%) Strand=Plus/Minus Query 25 CTTGATGTAGCTCGAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGT 84 |||||||| ||| |||||||||||||||||||| ||| || | | || || ||||| Sbjct 22376234 CTTGATGTTGCTAAAACACAATGGTACCATTTCACAGCAATTGTGATCGCTGGCATGGGC 22376175 Query 85 CTATTCACCGACGCATACGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAG--TC 142 | ||||| |||||||| ||||| || ||||| | | ||| | ||| || | | | Sbjct 22376174 TTTTTCACTGACGCATATGATCTCTTTTGCATCTCTCTGGTGACCAAACTGTTGGGCCGC 22376115 Query 143 ATGT-TTATTACAACGGTGACTCAATCAACACAGCCGTTCT---TTCAACT-TCTTACGC 197 ||| |||||| | | | ||| || | | | ||| ||||| | ||| || Sbjct 22376114 TTGTACTATTACGAGGAAGGCTCTCCTAATCCTGGCTCTCTGCCTTCAAATGTCT--CGG 22376057 Query 198 C--------ATCGCTTT--ACTCGGCACAGCC---ACGGGTCAACTAGTCTTCGGTTACC 244 | || || || ||| || | || | || ||||| |||| || | | Sbjct 22376056 CTGCTGTAAATAGCGTTGCCCTCTGCGGAACCCTTGCAGGGCAACTCTTCTTTGGCTGGC 22375997 Query 245 TCGGTGACCGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATCCTTA 304 |||||||| | | || || || || || || | | || | ||| || || Sbjct 22375996 TCGGTGACAAAATGGGCCGCAAACGTGTATATGGCATGACCCTCATGCTCATGGTCATTT 22375937 Query 305 GCTCCTTTGGTTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTTAGCC 364 |||| ||| |||||| ||||| | | | | || || |||||||| || | Sbjct 22375936 GCTCAATTGCCTGTGGCCTTTCCTTTGGAAAAAATC-CCG--AAGCTGTTATGGCTACAC 22375880 Query 365 TCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTA 424 | | || ||| |||||| ||||| || || || || ||||| |||||||| || || | Sbjct 22375879 TGTGCTTCTTCAGGTTCTGGCTTGGCTTTGGGATTGGCGGTGACTACCCGCTTTCTGCCA 22375820 Query 425 CCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTT 484 | || ||||| |||| ||| || |||| ||| || || || || || ||||| |||||| Sbjct 22375819 CTATCATGTCTGAGTATGCCAACAAGAAGACCCGGGGAGCCTTCATTGCTGCAGTGTTTG 22375760 Query 485 CGATGCAAGGGTTGGGGATT 504 | |||||||| || || ||| Sbjct 22375759 CAATGCAAGGTTTTGGAATT 22375740 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATTTC 1266 || |||||| ||||||||||| || | || || || || | || |||||| |||| Sbjct 22375034 TTTTTCTTTGCAAATTTTGGTCCAAATGCCACCACATTCGTTGTGCCAGCAGAGATTTTC 22374975 Query 1267 CCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGGCT 1326 || || ||| | ||||| || |||||||| || || | ||| ||||| ||| |||||| Sbjct 22374974 CCAGCAAGGCTAAGGTCAACATGTCACGGTATATCAGCTGCAGCGGGAAAGGCTGGGGCA 22374915 Query 1327 ATTGTGGG 1334 || || || Sbjct 22374914 ATAGTTGG 22374907 Score = 62.6 bits (68), Expect = 1e-07 Identities = 238/371 (64%), Gaps = 31/371 (8%) Strand=Plus/Minus Query 351 TGTTATGGTTAGCCTCGGTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTA 410 |||||||| || || | || ||| |||||| ||||| || || || || ||||| || Sbjct 22375893 TGTTATGGCTACACTGTGCTTCTTCAGGTTCTGGCTTGGCTTTGGGATTGGCGGTGACTA 22375834 Query 411 CCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTAT 470 |||||| || || || || ||||| |||| ||| || |||| ||| || || || || || Sbjct 22375833 CCCGCTTTCTGCCACTATCATGTCTGAGTATGCCAACAAGAAGACCCGGGGAGCCTTCAT 22375774 Query 471 CGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCTCTGCCGTGACCATGGC 530 ||||| |||||| | |||||||| || || ||| | ||| | ||| ||||| Sbjct 22375773 TGCTGCAGTGTTTGCAATGCAAGGTTTTGGAATTCT----AGC----CGGTGGG-ATGGC 22375723 Query 531 TG---------TTTGCGTGGCGTTTAAGAGAAG------TGGCGGTGGTTTGGAGGTGGA 575 || ||| | || || ||| | || | | || | | || Sbjct 22375722 TGCTATTATAGTTTCAGCAGCTTTCAAGGCCAAATACCCTGCCCAGGCTTATAAATTTGA 22375663 Query 576 TGC----GGCGGC--TCCGACGGAAGCTGACTTGGCCTGGAGACTTATACTTATGATCGG 629 | ||| | ||| | |||||||| | | |||| || | || | ||| | || Sbjct 22375662 TAATATTGGCTCCACTCCTCCAGAAGCTGATTATGTCTGGCGAATAATTGTAATGTTTGG 22375603 Query 630 TGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTTGATGCCTGAAACCGCAAGATA 689 || | || |||||| | || | || ||||| ||| ||||||||||| || | || Sbjct 22375602 AGCAATCCCAGCTGCACTTACATATTACTGGCGCATGAAAATGCCTGAAACTGCTCGTTA 22375543 Query 690 CACAGCACTTG 700 ||| || |||| Sbjct 22375542 CACTGC-CTTG 22375533 Score = 37.4 bits (40), Expect = 4.8 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 278 GACTTTGTTTGATTATTATGATCCTTAGCTCCTT 311 || || |||||| |||||||||||||| ||||| Sbjct 3118386 GATTTAGTTTGAATATTATGATCCTTA--TCCTT 3118417 Score = 37.4 bits (40), Expect = 4.8 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 278 GACTTTGTTTGATTATTATGATCCTTAGCTCCTT 311 || || |||||| |||||||||||||| ||||| Sbjct 3123177 GATTTAGTTTGAATATTATGATCCTTA--TCCTT 3123208 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 102 bits (112), Expect = 1e-19 Identities = 294/457 (64%), Gaps = 48/457 (11%) Strand=Plus/Plus Query 38 GAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACG 97 |||| || | |||||||||||| |||||||| |||| || ||||| || ||||||||| Sbjct 26235088 GAACTCAGTTGTACCATTTCAAGGCGATCATCATAGCCGGCATGGGCCTCTTCACCGACT 26235147 Query 98 CATACGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAGTCATGTTTATTAC---A 154 | ||||| || |||||||| | ||| ||||||| | || | | || || ||| | Sbjct 26235148 CCTACGACCTCTTCTGCATCCCTCCGATCATGAACCTCATCGGACGGGTGTACTACTAGA 26235207 Query 155 ACG-------GT--GAC-TCAA-----------TCAACACAGCCGTTCTTTCAACTTCTT 193 ||| || ||| || | || | | ||||| || || Sbjct 26235208 ACGAGATCGAGTCCGACGTCGAGAAGTACAGGGTCCCCCCCGCCGTGGCCTCGACCATGG 26235267 Query 194 ACGCCATCGCTTTACTCGGCACAGCCACGGGTCAACTAGTCTTCGGTTACCTCGGTGACC 253 ||||||||| | || || ||||| | || ||||| |||||||||| |||| |||| Sbjct 26235268 TGGCCATCGCTCTTCTGGGAACAGCAATCGGGCAACTGGTCTTCGGTTGGCTCGACGACC 26235327 Query 254 GAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATCCTTAGCTCCTTTG 313 |||||| | ||||| || ||||| || |||| || ||| | || |||||| | Sbjct 26235328 TAGTCGGGAGGCGCCGCGTGTACGGGCTCGCGTTGACGATCATGGTGCTCAGCTCCATCA 26235387 Query 314 GTTGTGGCTTTTCCGTGTGCACCACTCGTCGGTCTTGTGTTATGGTTAGCCTCGGTTTTT 373 | || | || ||| | ||||| | | | || || ||||||| Sbjct 26235388 GATGCGAGTTCTCCTTCTGCACGA---GGAAGAGCTGCGTGCTGGTTAG----------- 26235433 Query 374 TCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCATTATGT 433 ||| || | || |||||||| || || || || ||||| || || |||| Sbjct 26235434 ----------TCTGGGGCTGGGGATCGGTGGGGACTATCCCCTGTCGGCGACGATCATGT 26235483 Query 434 CGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTAT 470 ||||||| || || |||| ||||||||| || || || Sbjct 26235484 CGGAGTTCGCGAACAAGAAGACACGTGGAGCTTTCAT 26235520 Score = 46.4 bits (50), Expect = 0.009 Identities = 57/78 (73%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1438 GGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCACCAAGGAAACTATGGGAAGA 1497 || ||||| ||| ||| | ||||||| | | ||||| || || |||||||| Sbjct 26241296 GGAGTTTGTCTTGTGGGATTGGTGGTGACATTGCTTTTCACACGTGAGACAATGGGAAGG 26241355 Query 1498 TCGTTAGAGGAGAACGAG 1515 || ||||||||||||||| Sbjct 26241356 TCATTAGAGGAGAACGAG 26241373 Score = 44.6 bits (48), Expect = 0.032 Identities = 67/95 (71%), Gaps = 9/95 (9%) Strand=Plus/Plus Query 604 GCCTGGAGACTTATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATT----- 658 || ||||| | ||||| ||| | ||||| |||| ||||| || || || || | Sbjct 26235638 GCTTGGAG--TAATACTGATGCTGGGTGCGGTTCCCGCTGCTTTTACTTTTTAGTTTTTA 26235695 Query 659 --GGCGAATGTTGATGCCTGAAACCGCAAGATACA 691 |||| |||| ||||||||||| || || |||| Sbjct 26235696 CTGGCGTATGTCCATGCCTGAAACTGCCAGGTACA 26235730 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 1345 TTCTTGTGGGCTACCAAGAAGATGGAAAG 1373 || ||| || ||||||||||||||||||| Sbjct 18960858 TTGTTGAGGCCTACCAAGAAGATGGAAAG 18960830 Score = 39.2 bits (42), Expect = 1.4 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 783 TCCACCTCCTCCTCCGCCGCCACC 806 ||||||||||||||| |||||||| Sbjct 21547561 TCCACCTCCTCCTCCTCCGCCACC 21547538 Score = 37.4 bits (40), Expect = 4.8 Identities = 47/63 (75%), Gaps = 5/63 (8%) Strand=Plus/Plus Query 784 CCACCTCCTCCTCCGCCGCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTTCCGCCTC 843 ||||||||||| || || ||||| |||| ||| || |||| || || ||| |||| Sbjct 7908993 CCACCTCCTCCACCTCCTCCACC-TCCT----CCTCCTCCTCCGCCGCCTCCTCCTCCTC 7909047 Query 844 CAT 846 ||| Sbjct 7909048 CAT 7909050 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 783 TCCACCTCCTCCTCCGCCGCCACCT 807 ||| ||||||||||||||||| ||| Sbjct 7909016 TCCTCCTCCTCCTCCGCCGCCTCCT 7909040 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 86.0 bits (94), Expect = 1e-14 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 368 GTTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCA 427 |||||||| |||| | || || || ||||||||||| |||||||||||| || || | Sbjct 16499290 GTTTTTTCAGGTTTTGGCTGGGGTTTGGTATCGGTGGAAATTACCCGCTCTTTGCAACGA 16499231 Query 428 TTATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGA 487 | ||| | |||| | | || ||||| | | || || || || ||||| || || | | Sbjct 16499230 TCATGGCTGAGTATTCAAACAAGAGAGCTTGGGGGGCTTTCATTGCTGCAGTTTTCGCTA 16499171 Query 488 TGCAAGGGTTGGGGATT 504 |||||||||| || ||| Sbjct 16499170 TGCAAGGGTTTGGAATT 16499154 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 88 TTCACCGACGCATACGATCTTTTCTGCAT 116 |||||||| | ||||||||||||||||| Sbjct 16503212 TTCACCGATTCCTACGATCTTTTCTGCAT 16503184 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 80.6 bits (88), Expect = 4e-13 Identities = 99/136 (73%), Gaps = 6/136 (4%) Strand=Plus/Plus Query 369 TTTTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCAT 428 ||||||| |||| | || || || |||||||| || |||||||||||||| || || || Sbjct 3942198 TTTTTTCAGGTTTTGGCTGGGGTTTGGTATCGGCGGAGATTACCCGCTCTCTGCAACAAT 3942257 Query 429 TATGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGAT 488 ||| | |||| | | || ||||| || || || || ||||| || || | || Sbjct 3942258 CATGGCTGAGTATTCAAACAAGAGAAC------TGCTTTCATTGCTGCAGTTTTCGCTAT 3942311 Query 489 GCAAGGGTTGGGGATT 504 ||||||||| || ||| Sbjct 3942312 GCAAGGGTTTGGAATT 3942327 Score = 78.8 bits (86), Expect = 2e-12 Identities = 213/319 (67%), Gaps = 13/319 (4%) Strand=Plus/Plus Query 1036 GGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAGATTATG 1095 || || ||| | |||||| |||||||| | || || ||| | || ||| | || Sbjct 3942890 GGATACTGGGTTACAGTTGCACTCATCGACCATATCGGACGTTTTGCGATTCAGCTAATT 3942949 Query 1096 GGGTTTTTCTTCATGGCCGTTATTTAT-TTAGTCGCTGGTATTCCGTACAGTTGGTATTG 1154 ||||||||||||||| | ||| || || || | | | ||||| ||| | | || Sbjct 3942950 GGGTTTTTCTTCATGTCAGTT-TTCATGTTTGCCCTAGCCATTCCTTAC---CAGCACTG 3943005 Query 1155 GTCAAAGCACGAGCATAATAATAAAGGCTTCATGGTTCTCTACGGTTTGGTTTTCTTCTT 1214 | || || || ||| || ||||| |||| | || | | | |||||||| Sbjct 3943006 GACA---CAAAAGGCAAATCATGTTGGCTTTGTGGTAATGTATGCGCTAATCTTCTTCTT 3943062 Query 1215 TTGCAATTTTGGTCCCAA---CACTACAACTTTTATTATTCCCGCAGAGCATTTCCCGGC 1271 ||||||||| || || || ||| || || || | ||||||||| ||||| || Sbjct 3943063 CGCCAATTTTGGGCCAAATAGCAGTACTACGTTCATCGTGCCCGCAGAGATCTTCCCTGC 3943122 Query 1272 TAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGC-GGGTAAGCTTGGGGCTATTG 1330 ||| || | || ||||| || || || || | ||| | ||| |||| ||| || |||| Sbjct 3943123 AAGGCTTCGATCAACTTGCCATGGTATTTCGGCTGCTTCAGGGAAAGC-TGGTGCAATTG 3943181 Query 1331 TGGGCACTGTTGGGTTCTT 1349 |||| || |||||||||| Sbjct 3943182 TGGGAGCTTTTGGGTTCTT 3943200 Score = 77.0 bits (84), Expect = 5e-12 Identities = 315/494 (64%), Gaps = 31/494 (6%) Strand=Plus/Minus Query 34 GCTCGAACACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACC 93 ||||| |||||||||||||| ||| || ||||| | || |||||||| | ||||| Sbjct 1009686 GCTCGCACACAATGGTACCACATCACCGCCATCATCATTGCTGGAATGGGGTTCTTCACA 1009627 Query 94 GACGCATACGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAGTCATGTTTATTAC 153 || |||||||| ||||| ||||| | ||||| ||| | | ||| |||| ||| Sbjct 1009626 GATGCATACGACCTTTTTTGCATCTCCACGGTCTCAAAACTCTTGGGTCGACTTTACTAC 1009567 Query 154 AACGGTGACTCAATCA-----ACACAG----------CCGTT-CTTTCAAC----TTCT- 192 || ||| | | || || | | ||||| | | ||| || | Sbjct 1009566 TAC---GACCCTAGCACAGGGACGCCGGGAAAGCTTCCCGTTAATGTTAACAACGTTGTG 1009510 Query 193 TACGCCATCGCTTTACTCGGCACAGCCACGGGTCAACTAGTCTTCGGTTACCTCGGTGAC 252 | | || || | ||||| || ||||||||||||||||| | || |||||| Sbjct 1009509 GTTGGTGTTGCCCTAATTGGCACTCTAACAGGTCAACTAGTCTTCGGCTGGCTGGGTGAC 1009450 Query 253 CGAGTCGGTCGTCGCCGAGTCTACGGACTTTGTTTGATTATTATGATCCTTAGCTCCTTT 312 | | || ||| | || || || | | | |||| ||| | || || || | Sbjct 1009449 AAACTTGGCCGTAAAAGGGTTTATGGTATCACTCTAGTTATCATGGTAATTTGCGCCATA 1009390 Query 313 GGTTGTGGCTTTTCCGT--GTGCACCACTCGTCGGTCTTGTGTTATGGTTAGCCTCGGTT 370 | | |||| |||| | ||||| || | |||||| | | || ||| Sbjct 1009389 TGCTCTGGCCTTTCTTTCGGTGCA-----GGTGCAAAATCTGTTATTGGAACGCTTTGTT 1009335 Query 371 TTTTCCGGTTCTTTCTTGGTTTAGGTATCGGTGGTGATTACCCGCTCTCGGCTACCATTA 430 | ||| |||||| | || || || || || || |||||||| ||||| || || || | Sbjct 1009334 TCTTCAGGTTCTGGTTAGGATTTGGCATTGGAGGAGATTACCCCCTCTCTGCCACGATCA 1009275 Query 431 TGTCGGAGTTTGCTAATAAGAGGACACGTGGCGCGTTTATCGCTGCGGTGTTTTCGATGC 490 |||| || | || || || | || ||||| || || ||||| || |||||| | |||| Sbjct 1009274 TGTCTGAATACGCCAACAAAAAAACTCGTGGGGCATTCATCGCCGCAGTGTTTGCAATGC 1009215 Query 491 AAGGGTTGGGGATT 504 |||| |||||||| Sbjct 1009214 AAGGTGTGGGGATT 1009201 Score = 60.8 bits (66), Expect = 4e-07 Identities = 63/81 (78%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 1031 TTCCC-GGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGGTCGTGTCAAAATCCAG 1089 ||||| ||||| |||||||| || ||||||||||| ||| | |||||| ||| ||||| Sbjct 1008663 TTCCCTGGTTACTGGTTCACCGTGTACTTCATCGAGAAGCTGGGTCGTTTCACCATCCAA 1008604 Query 1090 ATTATGGGGTTTTTCTTCATG 1110 || | || |||||| ||| Sbjct 1008603 CTTGTCGG---TTTCTTTATG 1008586 Score = 50.0 bits (54), Expect = 8e-04 Identities = 57/77 (74%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 619 CTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTTGATGCCTGAA 678 |||||| | || ||| |||| || || || | ||||||||||||| ||||| ||| Sbjct 1009071 CTTATGCTAGGAGCTTTTCCGGCACTCTTAACTTACTATTGGCGAATGAAAATGCCCGAA 1009012 Query 679 ACCGCAAGATACACAGC 695 |||| ||||||| || Sbjct 1009011 ACCGGTCGATACACCGC 1008995 Score = 39.2 bits (42), Expect = 1.4 Identities = 35/44 (80%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 73 GCGGGAATGGGTCTATTCACCGACGCATACGATCTTTTCTGCAT 116 || || ||||| | |||||||| | ||||| ||||||||||| Sbjct 3941812 GCCGGCATGGGGTTCTTCACCGATTCCTACGACCTTTTCTGCAT 3941855 Score = 37.4 bits (40), Expect = 4.8 Identities = 43/57 (75%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 782 ATCCACCTCCTCCTCCGCCGCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTTCC 838 |||| ||||||||||| | ||| | |||| | |||||||| | || | |||||| Sbjct 20648823 ATCCTCCTCCTCCTCCTACTCCAACATCCTTCTTACTCTTCTACGCCTTC-TCTTCC 20648768 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 73.4 bits (80), Expect = 7e-11 Identities = 105/147 (71%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 1206 TTTCTTCTTTTGC-AATTTTGGTCCCAACACTACAACTTTTATTATTCCCGCAGAGCATT 1264 ||||||||||||| ||||| || || ||| | || || ||| | | | || || || Sbjct 6371671 TTTCTTCTTTTGCTAATTTCGGGCCTAACGCAACCACATTTGTCGTGCTAGCTAAGATTT 6371612 Query 1265 TCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGCGGGTAAGCTTGGGG 1324 |||| | || || |||||||||| ||||| || ||| || ||| |||||||| | Sbjct 6371611 TCCCAACCAGATTACGGTCTACTTGCCACGGCATATCTACAGCATCGGAAAAGCTTGGAG 6371552 Query 1325 CTATTGTGGGCACTGTTGGGTTCTTGT 1351 | || ||||| | |||| ||||||| Sbjct 6371551 CCATAGTGGGTGCGTTTGGTTTCTTGT 6371525 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 271 GTCTACGGACTTTGTTTGATTATTATGAT 299 |||||||||||||| | ||||||| |||| Sbjct 11766048 GTCTACGGACTTTGGTGGATTATTTTGAT 11766076 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 784 CCACCTCCTCCTCCGCCGCCACCTT 808 |||||||||||||| || ||||||| Sbjct 4002229 CCACCTCCTCCTCCACCTCCACCTT 4002253 Score = 37.4 bits (40), Expect = 4.8 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Plus Query 1345 TTCTTGTGGGCTACCAAGAAGATGGAAAGCGATGATAAA 1383 || ||| || |||||||||||||||| || ||| ||||| Sbjct 12244515 TTATTGAGGCCTACCAAGAAGATGGAGAG-GAT-ATAAA 12244551 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 41.0 bits (44), Expect = 0.39 Identities = 33/39 (85%), Gaps = 1/39 (3%) Strand=Plus/Plus Query 826 CGCTGCTTCTT-CCGCCTCCATGGTCGCGACCTCTTCGC 863 |||| | |||| || ||||| ||||||||||||| |||| Sbjct 19073131 CGCTCCCTCTTTCCCCCTCCCTGGTCGCGACCTCCTCGC 19073169 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 783 TCCACCTCCTCCTCCGCCGCCACCTT 808 ||||||||||||||| || ||||||| Sbjct 34479054 TCCACCTCCTCCTCCACCTCCACCTT 34479079 Score = 37.4 bits (40), Expect = 4.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 694 GCACTTGTAGAAAACAATATCGTCCAAGCA 723 ||| ||| |||| |||| |||||||||||| Sbjct 22770776 GCATTTGGAGAACACAAAATCGTCCAAGCA 22770805 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCA 1231 ||||||||||||||||||| | ||| Sbjct 24496492 TTCTTCTTTTGCAATTTTGTTTCCA 24496468 Score = 37.4 bits (40), Expect = 4.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 694 GCACTTGTAGAAAACAATATCGTCCAAGCA 723 ||| ||| |||| |||| |||||||||||| Sbjct 26471250 GCATTTGGAGAACACAAAATCGTCCAAGCA 26471279 Score = 37.4 bits (40), Expect = 4.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 782 ATCCACCTCCTCCTCCGCCGCCACCTTC 809 ||||||||||||||||| || |||| || Sbjct 26954283 ATCCACCTCCTCCTCCGTCGGCACCATC 26954310 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 1.4 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1202 TGGTTTTCTTCTTTTGCAATTTTG 1225 |||||||||||||||| ||||||| Sbjct 3104372 TGGTTTTCTTCTTTTGAAATTTTG 3104349 Score = 37.4 bits (40), Expect = 4.8 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 278 GACTTTGTTTGATTATTATGATCCTTAGCTCCTT 311 || || |||||| |||||||||||||| ||||| Sbjct 6396687 GATTTAGTTTGAATATTATGATCCTTA--TCCTT 6396718 Score = 37.4 bits (40), Expect = 4.8 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 278 GACTTTGTTTGATTATTATGATCCTTAGCTCCTT 311 || || |||||| |||||||||||||| ||||| Sbjct 6401475 GATTTAGTTTGAATATTATGATCCTTA--TCCTT 6401506 Score = 37.4 bits (40), Expect = 4.8 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 783 TCCACCTCCTCCTCCGCCGC 802 |||||||||||||||||||| Sbjct 18818982 TCCACCTCCTCCTCCGCCGC 18818963 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 39.2 bits (42), Expect = 1.4 Identities = 32/38 (84%), Gaps = 1/38 (3%) Strand=Plus/Minus Query 1026 CACCATTCCCG-GTTATTGGTTCACAGTTTACTTCATC 1062 |||||||||| ||| ||||||||||||| |||| || Sbjct 26511314 CACCATTCCCTCGTTTCTGGTTCACAGTTTCCTTCTTC 26511277 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 782 ATCCACCTCCTCCTCCGCCGCCACC 806 |||||||||||||||| || ||||| Sbjct 12714920 ATCCACCTCCTCCTCCACCACCACC 12714896 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCA 1231 ||||||||||||||||||| | ||| Sbjct 12508594 TTCTTCTTTTGCAATTTTGTTTCCA 12508618 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 782 ATCCACCTCCTCCTCCGCCGCCACC 806 |||| ||||||||||| |||||||| Sbjct 443808 ATCCTCCTCCTCCTCCTCCGCCACC 443784 Score = 37.4 bits (40), Expect = 4.8 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1205 TTTTCTTCTTTTGCAATTTT 1224 |||||||||||||||||||| Sbjct 21296968 TTTTCTTCTTTTGCAATTTT 21296949 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCA 1231 ||||||||||||||||||| | ||| Sbjct 3115901 TTCTTCTTTTGCAATTTTGTTTCCA 3115925 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCA 1231 ||||||||||||||||||| | ||| Sbjct 4353544 TTCTTCTTTTGCAATTTTGTTTCCA 4353520 Score = 37.4 bits (40), Expect = 4.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1207 TTCTTCTTTTGCAATTTTGGTCCCA 1231 ||||||||||||||||||| | ||| Sbjct 7325834 TTCTTCTTTTGCAATTTTGTTTCCA 7325858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 841035269789 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2