BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1967 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4S 176 9e-42 lcl|Jr1D 116 8e-24 lcl|Jr3D 104 5e-20 lcl|Jr2D 100 6e-19 lcl|Jr4D 91.5 3e-16 lcl|Jr2S 89.7 1e-15 lcl|Jr1S 87.8 4e-15 lcl|Jr8S 73.4 8e-11 lcl|Jr3S 66.2 1e-08 lcl|Jr7D 42.8 0.14 lcl|Jr5S 42.8 0.14 lcl|Jr5D 42.8 0.14 lcl|Jr8D 39.2 1.7 lcl|Jr6D 39.2 1.7 lcl|JrScfU0040 37.4 5.9 lcl|Jr7S 37.4 5.9 lcl|Jr6S 37.4 5.9 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 176 bits (194), Expect = 9e-42 Identities = 363/530 (68%), Gaps = 19/530 (4%) Strand=Plus/Minus Query 1199 TGCCTTTGAAGTAGCTAAGCTTGCAGCCATTGTAGCCGCTTGCTCCACCATCCCTGGTTA 1258 ||| |||||||| || || | ||| ||||| || || || || ||||| || || || Sbjct 7863242 TGCTTTTGAAGTTGCAAAAATCCAAGCAATTGTTGCAGCCTGTTCTACCATTCCAGGCTA 7863183 Query 1259 CTGGTTCACGGTCTATTTCATCGATAAAATCGGTAGAGTCAAGATTCAGATGATGGGGTT 1318 |||||| || |||||||| || ||| | || ||||||| || || ||||| || Sbjct 7863182 CTGGTTTACTGTCTATTTTATTGATGTCGTTGGAAGAGTCAGAATCCAAGCAATGGGTTT 7863123 Query 1319 TTTCCTTATGGCGGTCGTTTACTTAGTCGCTGGGATTCCGTAT--AGTTGGTATTGGTCT 1376 | || ||||| | ||||| ||| |||||| || || | || ||||| Sbjct 7863122 TCTCTGCATGGCACTGGTTTATCTAGCAATTGGGATACCCTACGAAATTC--ATTGGG-- 7863067 Query 1377 AAGCATGAGAAGACTAATAAAGGCTTTATGGTTCTCTACGGATTGATTTTCTTCTTTAGC 1436 ||||| || || ||| ||| || ||||| ||||| || | | || |||||| || Sbjct 7863066 -AGCAT---AATACAAATGCAGGGTTCATGGTCCTCTATGGCCTCACCTTTTTCTTT-GC 7863012 Query 1437 AACTTT-GGCCCTAACACGACGACGTTTATCATCCCGGCGGAGCTTTTTCCGGCTAGGTT 1495 || ||| || || ||||| || || || || | || |||||||||||||| || | || Sbjct 7863011 AAATTTCGGACCAAACACAACCACCTTCATAGTGCCCGCGGAGCTTTTTCCAGCAAAATT 7862952 Query 1496 TAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCGATTGTTGGCAC 1555 ||| | || || || ||||| ||||| |||||||||||| | || || || |||| | Sbjct 7862951 TAGAACAACATGCCATGGGATTTCTGGTGCTGCAGGGAAGGTGGGGGCAATCATTGGTTC 7862892 Query 1556 TGTCGGTTTCTTGTGGGC--CAC-GAGACACCATGAAGAGGACGGTTTTCCAGATGTGAA 1612 ||| || || |||||||| ||| | | | ||| ||| || | ||| |||| | Sbjct 7862891 TGTTGGATTTTTGTGGGCTTCACATAAAGGTAAAGAATGGGAGGGCTATCCCGATGCAAT 7862832 Query 1613 ACGTGTGA--GAATCGCGTTTTTGATCCTTGGCGGCGTTTGTATCGCGGGAATGATCGTA 1670 | ||| | || | || | | |||| ||| |||||| | ||||||||| | || Sbjct 7862831 TGGAATGACTGCAT--CATTGATATTGCTTGCCGGAGTTTGTCTTGCGGGAATGGTGGTG 7862774 Query 1671 ACGTATTTGTTCACGCGTGAAACTATGGGAAGATCGTTAGAAGAGAACGA 1720 || | | ||||||||||| || ||||| ||||| || || ||||| || Sbjct 7862773 ACATTGCTTTTCACGCGTGAGACCATGGGGAGATCATTGGAGGAGAATGA 7862724 Score = 132 bits (146), Expect = 1e-28 Identities = 218/312 (70%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 387 GCAATCGCTCTTCTTGGCACCGCGTTAGGTCAGCTCATCTTTGGTTACTTAGGTGACCGA 446 || ||||||||| | || || ||| | || || | | || || | | || |||||| Sbjct 7860150 GCCATCGCTCTTATGGGAACTGCGATCGGCCAAGTGGTTTTCGGCTGGCTGGGCGACCGA 7860091 Query 447 GTCGGACGTCGTAAAGTCTATGGACTTAGTCTCTTGATCATGGTGTTTAGCTCCTTTGGT 506 ||||| | || ||||| || | | | |||||||||| | ||||| || ||| Sbjct 7860090 GTCGGTAGGCGGCGCGTCTACGGGATCGCTTTGATGATCATGGTCCTAAGCTCTTTCGGT 7860031 Query 507 TGTGGCTTCTCTGTTTGCACGACTCGACGTTCTTGTGTTATGGTTAGTCTTGGATTCTTT 566 || || ||||| | |||| | || | || | ||| ||| || || ||| | || Sbjct 7860030 TGCGGGTTCTCCTTCTGCAAGGA--GAGGGGCT-GCGTTCTGGCGAGCCTGGGACTATTC 7859974 Query 567 AGATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCG 626 || |||| || || || || || || || || || ||||| ||||| || |||||| Sbjct 7859973 AGGTTCGCACTGGGCCTGGGGATTGGCGGGGACTACCCTCTGTCGGCAGTCATAATGTCG 7859914 Query 627 GAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGG 686 ||||| || ||||| | ||| || |||||||| || || ||||||||||||||||| || Sbjct 7859913 GAGTTAGCGAACAAGATGACACGCGGAGCTTTCATAGCGGCCGTGTTCTCGATGCAGGGA 7859854 Query 687 TTAGGGATTTTG 698 || ||||||||| Sbjct 7859853 TTTGGGATTTTG 7859842 Score = 118 bits (130), Expect = 2e-24 Identities = 312/474 (66%), Gaps = 18/474 (4%) Strand=Plus/Minus Query 240 TACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATACGATCTT 299 ||||||||||| || || || ||||||| ||||| || ||||||||||| ||||| || Sbjct 7871800 TACCATTTCAAGGCAATCATCATCGCCGGCATGGGGCTATTCACCGACGCCTACGACCTC 7871741 Query 300 TTCTGTATAGCTCCGATCATGAAAATGATAAGTCAAATATATTACCAC---AAAGAC--- 353 ||||| || |||| ||||||| | || | | | || ||| || ||||| Sbjct 7871740 TTCTGCATCCCTCCCATCATGATTCTCATCGGACGGGTTTACTACGACGATAAAGAGGTC 7871681 Query 354 --TCA--ATCGG-----AACCGCTCTTCTCTCAACTTCTTACGCAATCGCTCTTCTTGGC 404 | | ||||| | ||| | |||| || | || |||||||| || || Sbjct 7871680 GATAAGTATCGGGTCCCACCCGGCGTGGTCTCGACCTTGGTGGCCATCGCTCTGCTGGGA 7871621 Query 405 ACCGCGTTAGGTCAGCTCATCTTTGGTTACTTAGGTGACCGAGTCGGACGTCGTAAAGTC 464 || ||| | ||||| | |||| || | || |||| | |||| | || || Sbjct 7871620 ACTGCGATCGGTCAAGTGGTCTTCGGCAGGCTCGGAGACCAAATCGGTAGGCGGCGCGTG 7871561 Query 465 TATGGACTTAGTCTCTTGATCATGGTGTTTAGCTCCTTTGGTTGTGGCTTCTCTGTTTGC 524 || ||| | | || |||||| | |||||| | | || || ||||| | ||| Sbjct 7871560 TACGGAACCGCATTGCTAATTATGGTGGTGAGCTCCCTCGCGTGCGGGTTCTCGATATGC 7871501 Query 525 ACGACTCGACGTTCTTGTGTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTT 584 | || | ||| | ||| ||| || || || | || || |||| || || || Sbjct 7871500 AGGAAGAGGGGTT---GCGTTCTGGCGAGCCTGGGGCTGTTCAGGTTCGCACTGGGTCTG 7871444 Query 585 GGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGG 644 ||||||||||| || || || | ||||| || ||||| ||||| || ||||| | | Sbjct 7871443 GGAATCGGTGGGGACTACCCGTTATCGGCAGTCATCATGTCTGAGTTCGCGAACAAGACG 7871384 Query 645 ACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTG 698 || |||||||| || || || || || ||||||||||| || || || |||||| Sbjct 7871383 ACACGTGGAGCGTTCATAGCGGCTGTCTTCTCGATGCAGGGATTTGGAATTTTG 7871330 Score = 60.8 bits (66), Expect = 5e-07 Identities = 54/68 (79%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 240 TACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATACGATCTT 299 ||||||||||| || || || ||||||| ||||| || || |||||||| ||||| | Sbjct 7860309 TACCATTTCAAGGCAATCATCATCGCCGGCATGGGGCTCTTTACCGACGCCTACGACTTA 7860250 Query 300 TTCTGTAT 307 ||||| || Sbjct 7860249 TTCTGCAT 7860242 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 4176026 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 4175999 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 21980203 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 21980235 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 116 bits (128), Expect = 8e-24 Identities = 199/285 (70%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 414 GGTCAGCTCATCTTTGGTTACTTAGGTGACCGAGTCGGACGTCGTAAAGTCTATGGACTT 473 || |||||| |||| |||| | |||||| | | || || || |||||||| || Sbjct 39556990 GGCCAGCTCTTCTTCGGTTGGCTTGGTGACAAATTGGGCCGCAAGAAGGTCTATGGTATT 39556931 Query 474 AGTCTCTTGATCATGGTGTTTAGCTCCTTTGGTTGTGGCTTCTCTGTTTGCACGACTCGA 533 | || | |||||||| || ||||| ||| | || ||||| |||| || |||| Sbjct 39556930 ACCCTTGTTCTCATGGTGGTTTGCTCCGTTGCCTCAGGGCTCTCT-TTTGGAC-ACTCAG 39556873 Query 534 CGTTCTTGTGTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGT 593 | | |||| |||| | || | ||||| |||| ||||| |||| |||||| Sbjct 39556872 CAAACA-GTGTCATGGCCACACTCTGTTTCTTCCGATTTTGGCTTGGCTTTGGTATCGGT 39556814 Query 594 GGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGA 653 || || || || ||||| || || || ||||| || | ||| ||||||| ||| ||||| Sbjct 39556813 GGTGACTACCCCCTTTCTGCTACAATCATGTCTGAATATGCCAACAAAAAGACTCGTGGG 39556754 Query 654 GCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTG 698 || ||||| || || || || | ||||||||||| || |||||| Sbjct 39556753 GCGTTTATAGCAGCGGTTTTTGCCATGCAAGGGTTTGGAATTTTG 39556709 Score = 113 bits (124), Expect = 9e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 539 TTGTGTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGA 598 || |||||||| || | | ||||| || ||| || || |||| || || || || Sbjct 39515693 TTCTGTTATGGCTACATTATGCTTCTTCAGGTTCTGGCTCGGCTTTGGCATTGGAGGTGA 39515634 Query 599 TTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTT 658 || || ||||| ||||| || ||||| |||| ||||||||||| ||| |||||||| || Sbjct 39515633 CTACCCGCTTTCTGCCACTATCATGTCTGAGTATGCTAACAAAAAGACCCGTGGAGCCTT 39515574 Query 659 TATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTG 698 ||||||||| ||||| | |||||||| || || ||| || Sbjct 39515573 TATCGCTGCAGTGTTTGCAATGCAAGGTTTTGGAATTCTG 39515534 Score = 93.3 bits (102), Expect = 9e-17 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 576 CTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCT 635 ||||| |||| || || || || ||||| ||||| || || || ||||| || | ||| Sbjct 39548343 CTTGGCTTTGGCATTGGCGGTGACTATCCCCTTTCAGCTACAATCATGTCTGAATATGCC 39548284 Query 636 AACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATT 695 ||||||| ||| || || |||||||||||||| || || | |||||||| || || | | Sbjct 39548283 AACAAAAAGACTCGCGGGGCTTTTATCGCTGCAGTTTTTGCCATGCAAGGCTTTGGAAAT 39548224 Query 696 TTGA 699 |||| Sbjct 39548223 TTGA 39548220 Score = 66.2 bits (72), Expect = 1e-08 Identities = 56/69 (81%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 239 GTACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATACGATCT 298 ||||||||||| || || || | ||||||||||| ||||||| || ||||||||||| Sbjct 39557183 GTACCATTTCACGGCAATTGTAATTGCCGGAATGGGCTTTTTCACAGATGCATACGATCT 39557124 Query 299 TTTCTGTAT 307 ||||| || Sbjct 39557123 GTTCTGCAT 39557115 Score = 62.6 bits (68), Expect = 1e-07 Identities = 58/74 (78%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 234 CAGTGGTACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATAC 293 || ||||||||||||| || || | | ||||||||||| ||||||| || ||||| Sbjct 39548700 CAATGGTACCATTTCACGGCAATCGTGATTGCCGGAATGGGGTTTTTCACGGATGCATAT 39548641 Query 294 GATCTTTTCTGTAT 307 || |||||||| || Sbjct 39548640 GACCTTTTCTGCAT 39548627 Score = 59.0 bits (64), Expect = 2e-06 Identities = 61/80 (76%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 233 ACAGTGGTACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATA 292 ||| ||||||||||||| ||| || | |||| || ||||| ||||||| || ||||| Sbjct 39516014 ACAATGGTACCATTTCACAGCAATTGTGATCGCTGGCATGGGCTTTTTCACTGATGCATA 39515955 Query 293 CGATCTTTTCTGTATAGCTC 312 ||||| || || || ||| Sbjct 39515954 TGATCTCTTTTGCATCTCTC 39515935 Score = 55.4 bits (60), Expect = 2e-05 Identities = 65/88 (74%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 828 ATTCTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGCCT 887 ||| | ||| |||| || | || || || | || | ||||||||| ||| |||||| Sbjct 39515413 ATTGTAATGTTCGGTGCCGTGCCAGCTGCTCTTACTTATTACTGGCGCATGAAAATGCCT 39515354 Query 888 GAAACCGCCAGATACACAGCATTGGTTG 915 ||||| || ||||||| || ||||||| Sbjct 39515353 GAAACTGCTCGATACACTGCCTTGGTTG 39515326 Score = 50.0 bits (54), Expect = 0.001 Identities = 83/120 (69%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 828 ATTCTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGCCT 887 ||||| ||| | ||||||||||| || || | || | |||||||| ||| ||||| Sbjct 39556588 ATTCTCATGTTTGGAGCTCTTCCGGCTGCCCTCACATACTACTGGCGTATGAAAATGCCA 39556529 Query 888 GAAACCGCCAGATACACAGCATTGGTTGAGAACAATGTAGTCCAAGCAGCAAAAGACATG 947 || || || | ||||| || |||| | || || | | ||||| || ||||||| Sbjct 39556528 GAGACAGCTCGTTACACTGCCCTGGTCGCCAAAAACGCAAAACAAGCCGCGGCAGACATG 39556469 Score = 41.0 bits (44), Expect = 0.48 Identities = 32/36 (89%), Gaps = 2/36 (6%) Strand=Plus/Plus Query 367 CTCTTCTCTCAACTTCTTACGCAA-TCGCTCTTCTT 401 ||||||||||||||||||| |||| || ||| |||| Sbjct 17827159 CTCTTCTCTCAACTTCTTA-GCAATTCTCTCCTCTT 17827193 Score = 39.2 bits (42), Expect = 1.7 Identities = 31/35 (89%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 926 AGTCCAAGCAGCAAAAGACATGCAAA-GAGTCATG 959 |||||||||||||||| ||| ||||| ||| |||| Sbjct 33418439 AGTCCAAGCAGCAAAA-ACAGGCAAATGAGCCATG 33418406 Score = 39.2 bits (42), Expect = 1.7 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1885 ttttttgtttttgttttCTCTCAGTCTCATGTTT 1918 |||||||| || |||| |||||||||||| ||| Sbjct 38404128 TTTTTTGTAATTATTTTTTCTCAGTCTCATCTTT 38404161 Score = 37.4 bits (40), Expect = 5.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1172 CCTCAACTCCACAAACGTCTACGAC 1196 ||||||| ||||||||||| ||||| Sbjct 512811 CCTCAACACCACAAACGTCCACGAC 512835 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 9253598 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 9253630 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 9362932 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 9362964 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 15158514 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 15158541 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 920 CAATGTAGTCCAAGCAGCAAAAGACATGCAAAG 952 |||||| | || ||||||| |||||||||||| Sbjct 16189763 CAATGTTCTGCAGGCAGCAATAGACATGCAAAG 16189795 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 7 AACTAAAGAAGTGGACTCGATCCAGGGAGGTGT 39 ||||| || | ||||||| ||||||||||||| Sbjct 19442306 AACTACAGGACGGGACTCGGTCCAGGGAGGTGT 19442338 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 23174258 TCAGTCTCATTATATTGAAAAGATTCTTAAAAA 23174290 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 24126048 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 24126016 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 33893634 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 33893607 Score = 37.4 bits (40), Expect = 5.9 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 1860 TTTTGATTGTTGA-TACTAAAGTTTCttttttgtttt 1895 |||||||| || ||||||||||| |||||| |||| Sbjct 48721098 TTTTGATTATTATGTACTAAAGTTTTTTTTTTTTTTT 48721062 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 104 bits (114), Expect = 5e-20 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 543 GTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTAT 602 ||||| | | ||| | || || || ||| ||||| ||||||| || |||||||| Sbjct 33880840 GTTATTGCGACTCTGTGTTTTTTCAGGTTCTGGCTTGGGTTTGGAATTGGCGGAGATTAC 33880781 Query 603 CCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATC 662 || || || || || || ||| | |||| ||||||||| | || || || |||||||| Sbjct 33880780 CCACTGTCTGCAACTATCATGGCCGAGTATGCTAACAAGAAAACTCGGGGGGCTTTTATT 33880721 Query 663 GCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTT 722 ||||| || ||| | ||||||||||| || ||| || || |||||| |||| ||| Sbjct 33880720 GCTGCAGTTTTCGCCATGCAAGGGTTTGGCATTCTGGGTGGCGGCGCTGTGGCTATAGTT 33880661 Query 723 GT 724 || Sbjct 33880660 GT 33880659 Score = 102 bits (112), Expect = 2e-19 Identities = 213/314 (68%), Gaps = 9/314 (3%) Strand=Plus/Minus Query 414 GGTCAGCTCATCTTTGGTTACTTAGGTGACCGAGTCGGACGTCGTAAA---GTCTATGGA 470 || ||||| ||||||||| | || ||| | || || |||| || |||||||| Sbjct 33896023 GGACAGCTTTTCTTTGGTTGGCTTGGCGACAG-GTTGG--GTCGGAAGCGCGTCTATGGC 33895967 Query 471 CTTAGTCTCTTGATCATGGTGTTTAGCTCCTTTGGTTGTGGCTTCTCTGTTTGCACGACT 530 | | |||| || | ||||| || ||||| | |||| || | || || | | || Sbjct 33895966 ATCACTCTCATGCTTATGGTTTTATGCTCCATCGGTTCCGGGCTTTCCTTTGGGAGCACC 33895907 Query 531 CGACGTTCTTGTGTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATC 590 | | || ||||| | | ||| | || || || ||| ||||| ||||||| Sbjct 33895906 CCAAACTCG---GTTATTGCGACTCTGTGTTTTTTCAGGTTCTGGCTTGGGTTTGGAATT 33895850 Query 591 GGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGT 650 || |||||||| || || || || || || ||| | |||| ||||||||| | || || Sbjct 33895849 GGCGGAGATTACCCACTGTCTGCAACTATCATGGCCGAGTATGCTAACAAGAAAACTCGG 33895790 Query 651 GGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCT 710 || ||||| || ||||| || ||| | ||||||||||| || ||| || || ||| Sbjct 33895789 GGGGCTTTAATTGCTGCAGTTTTCGCCATGCAAGGGTTTGGCATTCTGGGTGGCGGCGCT 33895730 Query 711 GTGACTATGGTTGT 724 ||| |||| ||||| Sbjct 33895729 GTGGCTATAGTTGT 33895716 Score = 98.7 bits (108), Expect = 2e-18 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 543 GTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTAT 602 ||||| | | ||| | || || || ||| ||||| |||| || || |||||||| Sbjct 33909111 GTTATTGCGACTCTGTGTTTTTTCAGGTTCTGGCTTGGGTTTGGCATTGGCGGAGATTAC 33909052 Query 603 CCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATC 662 || || || || || || ||| |||||| ||||||||| | || || || |||||||| Sbjct 33909051 CCACTGTCTGCAACTATCATGGCGGAGTATGCTAACAAGAAAACTCGGGGGGCTTTTATT 33908992 Query 663 GCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTT 722 ||||| || ||| | ||||||||||| || ||| || | |||||| |||| ||| Sbjct 33908991 GCTGCAGTTTTCGCCATGCAAGGGTTTGGCATTCTGTGTGGAGGCGCTGTGGCTATAGTT 33908932 Query 723 GT 724 || Sbjct 33908931 GT 33908930 Score = 96.9 bits (106), Expect = 7e-18 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 583 TTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAA 642 |||| || || ||||| ||||| || || |||||||| ||||| || | ||||||||||| Sbjct 37740363 TTGGCATTGGAGGAGACTATCCACTCTCAGCCACGATCATGTCCGAATATGCTAACAAAA 37740422 Query 643 GGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATT 695 || ||||| || || || ||||| ||||| ||||||| ||| | |||||| Sbjct 37740423 CAACTCGTGGGGCATTCATTGCTGCAGTGTTTGCGATGCAGGGGGTGGGGATT 37740475 Score = 95.1 bits (104), Expect = 3e-17 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 483 ATCATGGTGTTTAGCTCCTTTGGTTGTGGCTTCTCTGTTTGCACGACTCGACGTTCTTGT 542 |||||||||||| || || | | | ||||| ||| || | | | | || || Sbjct 37725975 ATCATGGTGTTTTGCGCCATATGCTCCGGCTTGTCTTTTGGTTCAAGTACACAATCC--- 37726031 Query 543 GTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTAT 602 ||||| | | ||| | ||||| || ||| || || |||| || || ||||| ||| Sbjct 37726032 GTTATCGGAACGCTTTGCTTCTTCAGGTTCTGGCTAGGGTTTGGTATTGGAGGAGACTAT 37726091 Query 603 CCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATC 662 ||||| ||||||||||| ||||| || | || ||||||| || ||||| | || || Sbjct 37726092 CCTCTCTCGGCCACGATCATGTCTGAATACGCCAACAAAAAAACTCGTGGGACGTTCATT 37726151 Query 663 GCTGCCGTGTTCTCGATGCAAGGGTTAGGGATT 695 || |||||||| | |||||||| | |||||| Sbjct 37726152 GCAGCCGTGTTTGCAATGCAAGGTGTGGGGATT 37726184 Score = 77.0 bits (84), Expect = 7e-12 Identities = 104/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 1425 TTCTTCTTTAGCAACTTTGGCCCTAACACGACGACGTTTATCATCCCGGCGGAGCTTTTT 1484 |||||||| ||| || || || || | || || || || | ||||||||| |||| Sbjct 33908238 TTCTTCTTCGCCAATTTCGGGCCAAATAGCACTACATTCATTGTACCGGCGGAGATTTTC 33908179 Query 1485 CCGGCTAGGTTTAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCG 1544 ||||||||| || | || || || || || || || | |||||||||||| ||||| Sbjct 33908178 CCGGCTAGGCTTCGATCAACATGCCATGGTATTTCAGCAGCTGCAGGGAAAGCAGGTGCA 33908119 Query 1545 ATTGTTGGCACTGTCGGTTTCTTGT 1569 || || || || | || ||||||| Sbjct 33908118 ATAGTGGGATCTTTTGGGTTCTTGT 33908094 Score = 75.2 bits (82), Expect = 2e-11 Identities = 115/164 (70%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1425 TTCTTCTTTAGCAACTTTGGCCCTAACACGACGACGTTTATCATCCCGGCGGAGCTTTTT 1484 |||||||| ||| || || || || | || || || || | ||||||||| |||| Sbjct 33895024 TTCTTCTTCGCCAATTTCGGGCCAAATAGCACTACATTCATTGTGCCGGCGGAGATTTTC 33894965 Query 1485 CCGGCTAGGTTTAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCG 1544 ||||| ||| || | || || || || || || || | |||||||||||| ||||| Sbjct 33894964 CCGGCGAGGCTTCGATCAACATGCCATGGTATTTCAGCAGCTGCAGGGAAAGCAGGTGCA 33894905 Query 1545 ATTGTTGGCACTGTCGGTTTCTTGTGGGCCACGAGACACCATGA 1588 || || || || | || ||||||| || || | ||||||| Sbjct 33894904 ATAGTGGGATCTTTTGGGTTCTTGTATGCATCGCAAAACCATGA 33894861 Score = 73.4 bits (80), Expect = 8e-11 Identities = 103/145 (71%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 1425 TTCTTCTTTAGCAACTTTGGCCCTAACACGACGACGTTTATCATCCCGGCGGAGCTTTTT 1484 |||||||| ||| || || || || | || || || || | ||||||||| |||| Sbjct 33879967 TTCTTCTTCGCCAATTTCGGGCCAAATAGCACTACATTCATTGTGCCGGCGGAGATTTTC 33879908 Query 1485 CCGGCTAGGTTTAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCG 1544 ||||| ||| || | || || || || || || || | |||||||||||| ||||| Sbjct 33879907 CCGGCGAGGCTTCGATCAACATGCCATGGTATTTCAGCAGCTGCAGGGAAAGCAGGTGCA 33879848 Query 1545 ATTGTTGGCACTGTCGGTTTCTTGT 1569 || || || || | || ||||||| Sbjct 33879847 ATAGTGGGATCTTTTGGGTTCTTGT 33879823 Score = 68.0 bits (74), Expect = 3e-09 Identities = 60/75 (80%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 233 ACAGTGGTACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATA 292 ||| |||||||| ||| || || || ||||||||||||| ||||||| || ||||| Sbjct 37740001 ACAATGGTACCACATCACTGCTATCATCATCGCCGGAATGGGGTTTTTCACTGATGCATA 37740060 Query 293 CGATCTTTTCTGTAT 307 ||| |||||||| || Sbjct 37740061 CGACCTTTTCTGCAT 37740075 Score = 64.4 bits (70), Expect = 4e-08 Identities = 62/80 (78%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1249 TCCCTGGTTACTGGTTCACGGTCTATTTCATCGATAAAATCGGTAGAGTCAAGATTCAGA 1308 ||||||||||||||||||| || | |||||||| || | || | ||||||| || Sbjct 37741011 TCCCTGGTTACTGGTTCACCGTGTTCTTCATCGAGAAGCTAGGACGGTTCAAGATCCAAC 37741070 Query 1309 TGATGGGGTTTTTCCTTATG 1328 | |||||||||||| | ||| Sbjct 37741071 TCATGGGGTTTTTCATGATG 37741090 Score = 59.0 bits (64), Expect = 2e-06 Identities = 76/103 (74%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 1226 CATTGTAGCCGCTTGCTCCACCATCCCTGGTTACTGGTTCACGGTCTATTTCATCGATAA 1285 ||||| | | ||||| | ||| ||||||||||||||||||| || | ||||| || || Sbjct 37726703 CATTGCA-CTGCTTGGT--ACCTTCCCTGGTTACTGGTTCACCGTGTTCTTCATTGAAAA 37726759 Query 1286 AATCGGTAGAGTCAAGATTCAGATGATGGGGTTTTTCCTTATG 1328 || || | ||| ||| || | || ||||||||| | ||| Sbjct 37726760 GATGGGACGGTTCATGATCCAACTCATTGGGTTTTTCATGATG 37726802 Score = 51.8 bits (56), Expect = 3e-04 Identities = 63/86 (73%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 262 TCGCCGGAATGGGACTTTTCACCGACGCATACGATCTTTTCTGTATAGCTCCGATCATGA 321 ||||||| ||||| | |||||||| | ||||||||||||| ||| | | | ||| || Sbjct 33881136 TCGCCGGCATGGGGTTCTTCACCGATTCCTACGATCTTTTCTCTATTTCCCTGGTCACGA 33881077 Query 322 AAATGATAAGTCAAATATATTACCAC 347 | | | ||| |||||||| ||| Sbjct 33881076 AGCTTCTCGGTCGCATATATTATCAC 33881051 Score = 51.8 bits (56), Expect = 3e-04 Identities = 63/86 (73%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 262 TCGCCGGAATGGGACTTTTCACCGACGCATACGATCTTTTCTGTATAGCTCCGATCATGA 321 ||||||| ||||| | |||||||| | ||||||||||||| ||| | | | ||| || Sbjct 33896193 TCGCCGGCATGGGGTTCTTCACCGATTCCTACGATCTTTTCTCTATTTCCCTGGTCACGA 33896134 Query 322 AAATGATAAGTCAAATATATTACCAC 347 | | | ||| |||||||| ||| Sbjct 33896133 AGCTTCTCGGTCGCATATATTATCAC 33896108 Score = 51.8 bits (56), Expect = 3e-04 Identities = 63/86 (73%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 262 TCGCCGGAATGGGACTTTTCACCGACGCATACGATCTTTTCTGTATAGCTCCGATCATGA 321 ||||||| ||||| | |||||||| | ||||||||||||| ||| | | | ||| || Sbjct 33909407 TCGCCGGCATGGGGTTCTTCACCGATTCCTACGATCTTTTCTCTATTTCCCTGGTCACGA 33909348 Query 322 AAATGATAAGTCAAATATATTACCAC 347 | | | ||| |||||||| ||| Sbjct 33909347 AGCTTCTCGGTCGCATATATTATCAC 33909322 Score = 50.0 bits (54), Expect = 0.001 Identities = 57/77 (74%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 831 CTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGCCTGAA 890 |||||||| ||||| |||| || ||||| | |||||||||||| ||||| ||| Sbjct 37726314 CTTATGATAGGAGCCGTTCCGGCACTCTTAACTTACTACTGGCGAATGAAAATGCCCGAA 37726373 Query 891 ACCGCCAGATACACAGC 907 || | || ||||| || Sbjct 37726374 ACAGGTAGGTACACGGC 37726390 Score = 44.6 bits (48), Expect = 0.040 Identities = 48/64 (75%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 829 TTCTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGCCTG 888 |||| ||||| ||||| |||| || ||||| | || ||||||||| ||||||| Sbjct 37740600 TTCTCATGATAGGAGCCGTTCCGGCGCTCTTAACTTACTATTGGCGAATGAAAATGCCTG 37740659 Query 889 AAAC 892 |||| Sbjct 37740660 AAAC 37740663 Score = 39.2 bits (42), Expect = 1.7 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 148 TCTCCGTATCTTGAAAAAATTCTTAAAAAAT 178 |||| ||| ||||||| ||||||||||||| Sbjct 36971546 TCTCATTATATTGAAAACATTCTTAAAAAAT 36971516 Score = 37.4 bits (40), Expect = 5.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1133 TCTCCTTCTCTCTCAAATCT 1152 |||||||||||||||||||| Sbjct 4664174 TCTCCTTCTCTCTCAAATCT 4664155 Score = 37.4 bits (40), Expect = 5.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1132 ATCTCCTTCTCTCTCAAATCTTT 1154 || |||||||||||||||||||| Sbjct 17498687 ATATCCTTCTCTCTCAAATCTTT 17498665 Score = 37.4 bits (40), Expect = 5.9 Identities = 38/48 (79%), Gaps = 4/48 (8%) Strand=Plus/Minus Query 1890 tgtttttgttttCTCTCAGTCT--CATGTTTACATAAAT--TTTTGAT 1933 ||| ||||| |||| ||| | ||||||||||||||| ||||||| Sbjct 23612359 TGTATTTGTAAACTCTAAGTTTTCCATGTTTACATAAATGATTTTGAT 23612312 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 30601349 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 30601317 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 100 bits (110), Expect = 6e-19 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 554 TCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGC 613 |||| | |||||| | || |||||| |||| || || || || || || ||||| || Sbjct 41809416 TCTTTGTTTCTTTCGGTTTTGGCTTGGATTTGGCATAGGGGGTGACTACCCACTTTCTGC 41809475 Query 614 CACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTT 673 || |||||||| || | |||||| || | ||| |||||||| || || || || ||||| Sbjct 41809476 AACCATTATGTCTGAATATGCTAATAAGAAGACTCGTGGAGCCTTCATTGCAGCAGTGTT 41809535 Query 674 CTCGATGCAAGGGTTAGGGATTTTG 698 | ||||||||||| || |||||| Sbjct 41809536 TGCCATGCAAGGGTTTGGCATTTTG 41809560 Score = 59.0 bits (64), Expect = 2e-06 Identities = 94/134 (70%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 819 TGGAGGTTGATTCTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTTACTGGCGAATG 878 |||||| | ||||| ||| | ||||| || || || || | || | |||||| | ||| Sbjct 41804873 TGGAGGATCATTCTAATGGTAGGAGCACTCCCAGCTGCACTGACTTACTACTGGAGGATG 41804932 Query 879 CTCATGCCTGAAACCGCCAGATACACAGCATTGGTTGAGAACAATGTAGTCCAAGCAGCA 938 ||||||||||| ||| | ||||| || | |||| || || | | || || ||| Sbjct 41804933 AAGATGCCTGAAACTGCCCGTTACACTGCCCTTGTTGCCAAGAACGCAAAACAGGCTGCA 41804992 Query 939 AAAGACATG-CAAA 951 || || ||| |||| Sbjct 41804993 AACGATATGTCAAA 41805006 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 51 CAGTCAAACCAAAGCATATTCCATATTT 78 ||| ||||||||||||||||| | |||| Sbjct 1506093 CAGACAAACCAAAGCATATTCAACATTT 1506066 Score = 37.4 bits (40), Expect = 5.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1911 TCATGTTTACATAAATTTTT 1930 |||||||||||||||||||| Sbjct 7055833 TCATGTTTACATAAATTTTT 7055852 Score = 37.4 bits (40), Expect = 5.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 154 TATCTTGAAAAAATTCTTAAAAA 176 ||| ||||||||||||||||||| Sbjct 14368569 TATATTGAAAAAATTCTTAAAAA 14368591 Score = 37.4 bits (40), Expect = 5.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 233 ACAGTGGTACCATTTCAAAGCGATA 257 ||||||||| ||||||||||| ||| Sbjct 16127221 ACAGTGGTAGCATTTCAAAGCAATA 16127197 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 41272394 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 41272426 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 91.5 bits (100), Expect = 3e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 225 GCGAGGATACAGTGGTACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACC 284 ||||| | |||| |||||||||||| ||||| || | ||||| ||||| || |||||| Sbjct 26235084 GCGAGAACTCAGTTGTACCATTTCAAGGCGATCATCATAGCCGGCATGGGCCTCTTCACC 26235143 Query 285 GACGCATACGATCTTTTCTGTATAGCTCCGATCATGAA 322 ||| | ||||| || ||||| || ||||||||||||| Sbjct 26235144 GACTCCTACGACCTCTTCTGCATCCCTCCGATCATGAA 26235181 Score = 82.4 bits (90), Expect = 2e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 582 CTTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAA 641 || || |||||||| || ||||| || ||||| ||||| ||||||||||| || ||||| Sbjct 26235441 CTGGGGATCGGTGGGGACTATCCCCTGTCGGCGACGATCATGTCGGAGTTCGCGAACAAG 26235500 Query 642 AGGACGCGTGGAGCTTTTAT 661 | ||| ||||||||||| || Sbjct 26235501 AAGACACGTGGAGCTTTCAT 26235520 Score = 55.4 bits (60), Expect = 2e-05 Identities = 73/101 (72%), Gaps = 9/101 (9%) Strand=Plus/Plus Query 810 GATATAGCGTGGAGGTTGATTCTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTTA- 868 ||||| || ||||| | || || ||| | || || ||||||| || || || ||||| Sbjct 26235632 GATATTGCTTGGAG--TAATACTGATGCTGGGTGCGGTTCCCGCTGCTTTTACTTTTTAG 26235689 Query 869 ------CTGGCGAATGCTCATGCCTGAAACCGCCAGATACA 903 |||||| ||| |||||||||||| ||||| |||| Sbjct 26235690 TTTTTACTGGCGTATGTCCATGCCTGAAACTGCCAGGTACA 26235730 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 10969045 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 10969013 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 15477123 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 15477091 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 20526295 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 20526268 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 89.7 bits (98), Expect = 1e-15 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 1425 TTCTTCTTTAGCAACTTT-GGCCCTAACACGACGACGTTTATCATCCCGGCGGAGCTTTT 1483 ||||||||| |||| ||| || || || | || || ||| || | || || ||| |||| Sbjct 35674799 TTCTTCTTT-GCAAATTTCGGGCCCAATGCCACCACATTTGTCGTGCCAGCTGAGATTTT 35674857 Query 1484 TCCGGCTAGGTTTAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGC 1543 ||||| ||| | ||||| || || || || ||||||| ||| |||| ||| |||| || Sbjct 35674858 CCCGGCCAGGCTGAGGTCTACTTGCCATGGCATATCTGCAGCATCAGGAAAGCTTGGAGC 35674917 Query 1544 GATTGTTGGCACTGTCGGTTTCTTGT 1569 || ||||| | |||||||||||| Sbjct 35674918 TATGGTTGGAGCATTCGGTTTCTTGT 35674943 Score = 80.6 bits (88), Expect = 6e-13 Identities = 218/328 (66%), Gaps = 12/328 (4%) Strand=Plus/Plus Query 1245 ACCATCCCTGGTTACTGGTTCACGGTCTATTTCATCGATAAAATCGGTAGAGTCAAGATT 1304 ||| | || || ||||||||||| || ||| || || || || || || || || Sbjct 35668180 ACCGTTCCAGGCTACTGGTTCACAGTGGCTTTAATTGACAAGATGGGAAGGTTCGCTATC 35668239 Query 1305 CAGATGATGGGGTTTTTCCTTATGGCGGTCGTTTACTTAGTCGCTGG-GATTCCGTATAG 1363 || ||||||| || ||| | ||| | || ||||| | | |||| ||||| || | Sbjct 35668240 CAATTGATGGGATTCTTCTTCATGACAGT-GTTTATGTTTGCCCTGGCTATTCCTTACA- 35668297 Query 1364 TTGGTATTGGTCTAAGCATGAGAAGA--CTAATAAAGGCTTTATGGTTCTCTACGGATTG 1421 | ||| || ||| |||| | | || || ||| | || ||||| | | Sbjct 35668298 --ACCACTGGACT---CATAAGAACAACCGCATTGAG--TTTGTAGTGATCTACTCACTA 35668350 Query 1422 ATTTTCTTCTTTAGCAACTTTGGCCCTAACACGACGACGTTTATCATCCCGGCGGAGCTT 1481 | ||||||||| || || || ||||| | || || ||| || | || || ||| || Sbjct 35668351 ACCTTCTTCTTTGCGAATTTCGGGCCTAATTCCACCACATTTGTCGTGCCAGCTGAGATT 35668410 Query 1482 TTTCCGGCTAGGTTTAGGTCCACGTGTCACGGGATATCTGGAGCTGCAGGGAAGTTTGGT 1541 || ||||| ||| | ||||| || || || || ||||||| ||| | |||||| | || Sbjct 35668411 TTCCCGGCCAGGCTAAGGTCTACTTGCCATGGCATATCTGCAGCATCTGGGAAGCTCGGG 35668470 Query 1542 GCGATTGTTGGCACTGTCGGTTTCTTGT 1569 || |||||||| || | || || |||| Sbjct 35668471 GCTATTGTTGGTGCTTTTGGGTTTTTGT 35668498 Score = 77.0 bits (84), Expect = 7e-12 Identities = 322/495 (65%), Gaps = 45/495 (9%) Strand=Plus/Plus Query 233 ACAGTGGTACCATTTCAAAGCGATAATAGTC---GCCGGAATGGGACTTTTCACCGACGC 289 ||| ||||| ||||| | | | ||| ||| || |||||||| | |||||||| || Sbjct 35667165 ACAATGGTATCATTTTA---CTACAATCGTCATTGCTGGAATGGGGTTCTTCACCGATGC 35667221 Query 290 ATACGATCTTTTCTGTATAGCTCCGATCATGAAAATGATAAGTCAAATATATTACCA--- 346 ||| ||||||||||| ||| ||| ||| ||| || | | | ||||||||||| Sbjct 35667222 ATATGATCTTTTCTGCATATCTCTTGTCACCAAATTGCTTGGCCGCATATATTACCATGT 35667281 Query 347 CAAAGACTCAATCGGAACC--GCTCTT---CTCTCAACTTCTTACGCAATCGCTCTT--- 398 | | | | | | | | || | ||| ||| |||| || | ||| ||| || Sbjct 35667282 CGATGGCGC-AGCAAAGCCTGGAACTTTGCCTCCCAACGTC-TCGGCA---GCTGTTAAT 35667336 Query 399 --CTTGGCACCGCGT-------TA---GGTCAGCTCATCTTTGGTTACTTAGGTGACCGA 446 | | |||| || || || || || ||||||| | | || || | | Sbjct 35667337 GGCGTAGCACTCTGTGGAACTCTAGCCGGCCAACTTTTCTTTGGGTGGCTTGGAGA-CAA 35667395 Query 447 GTCGGACGTCGTAA---AGTCTATGGACTTAGTCTCTTGATCATGGTGTTTAG-CTCCTT 502 | || | | || |||||| || | | |||| || ||||||| | ||| |||| | Sbjct 35667396 GATGG--GCAGGAAGCGAGTCTACGGCATGACTCTCATGCTCATGGT-TATAGCCTCCGT 35667452 Query 503 TGGTTGTGGCTTCTCTGTTTGCACGACTCGACGTTCTTGTGTTATGGTTAGTCTTGGATT 562 || || ||| | || || ||| | | | || ||| |||| | || | || Sbjct 35667453 TGCTTCTGGTCTTTCCTTTGGCAGCAATGCAAAGTC---TGTCATGGCAACACTCTGCTT 35667509 Query 563 CTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTAT 622 || | ||| ||||| |||| || || |||||||| |||||||| ||||| || || Sbjct 35667510 TTTCCGGTTCTGGCTTGGGTTTGGTATTGGCGGAGATTACCCTCTTTCCGCCACCATCAT 35667569 Query 623 GTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCA 682 |||||| | ||| ||||| | ||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 35667570 GTCGGAATATGCCAACAAGAAGACCCGTGGTGCTTTCATTGCTGCCGTCTTCGCCATGCA 35667629 Query 683 AGGGTTAGGGATTTT 697 || || || || || Sbjct 35667630 GGGATTTGGCATCTT 35667644 Score = 73.4 bits (80), Expect = 8e-11 Identities = 249/380 (66%), Gaps = 25/380 (7%) Strand=Plus/Plus Query 576 CTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCT 635 ||||| |||| || || |||||||| |||||||| ||||| || |||||||| | ||| Sbjct 35667523 CTTGGGTTTGGTATTGGCGGAGATTACCCTCTTTCCGCCACCATCATGTCGGAATATGCC 35667582 Query 636 AACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATT 695 ||||| | ||| ||||| ||||| || |||||||| ||| | ||||| || || || || Sbjct 35667583 AACAAGAAGACCCGTGGTGCTTTCATTGCTGCCGTCTTCGCCATGCAGGGATTTGGCATC 35667642 Query 696 TT-GATGAGCTCTGCTGTGACTATGGTTGTGTGCTTG-GCGTTCAAGAACGCTGGAGAGG 753 || | || || | | |||| || | ||| | || |||||| | ||| Sbjct 35667643 TTAGCTG-GCGGTATATTTGCTATTATTAT-TGCATCTGCATTCAAGTCC-------AGG 35667693 Query 754 GGAGTTCGGAGAAGACGAACGTGGCGGGGTTAGAGACTTTGGCTCCGCCGG-----AATC 808 || || | | | | | |||| | ||||||| | | || | Sbjct 35667694 T---TT----GATGTCCCATCTTATGAGGTTGATGCAGTTGGCTCAACTGTTCCACAAGC 35667746 Query 809 GGA-TATAGCGTGGAGGTTGATTCTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTT 867 || ||| | |||||| | || | ||| | || || ||||| || || | || | | Sbjct 35667747 AGACTAT-GTTTGGAGGATTATCTTAATGGTTGGTGCACTTCCTGCTGCACTCACCTACT 35667805 Query 868 ACTGGCGAATGCTCATGCCTGAAACCGCCAGATACACAGCATTGGTTGAGAACAATGTAG 927 ||||| | ||| ||||||||||| ||| | ||||| || | |||| || |||| | Sbjct 35667806 ACTGGAGGATGAAGATGCCTGAAACTGCCCGTTACACTGCCCTTGTTGCCAAGAATGCAA 35667865 Query 928 TCCAAGCAGCAAAAGACATG 947 ||| || |||||||| ||| Sbjct 35667866 ACCAGGCTGCAAAAGATATG 35667885 Score = 73.4 bits (80), Expect = 8e-11 Identities = 270/412 (66%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 542 TGTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTA 601 ||||||| | ||| | |||||| | ||| ||||| |||| |||||||| || || Sbjct 35673934 TGTTATGAGCACCCTTTGCTTCTTTCGGTTCTGGCTTGGTTTTGGCATCGGTGGTGACTA 35673993 Query 602 TCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTAT 661 || ||||| || || |||||||| || | ||| ||||| | ||| |||||||| || || Sbjct 35673994 CCCACTTTCTGCTACCATTATGTCCGAATATGCAAACAAGAAGACTCGTGGAGCCTTCAT 35674053 Query 662 CGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGT 721 ||||| ||||| | ||||| || || || ||||| | | | | | |||| | || | Sbjct 35674054 TGCTGCAGTGTTTGCCATGCAGGGCTTTGGCATTTT-AGGTGGT--GGTGTG--TTTGCT 35674108 Query 722 TGTGTGCTTGGCGTTCAAGAACGCTGGAGAGGGGAGTTCGGAGAAGACGAACGTGGCGGG 781 | | | |||| ||| | | | ||| | |||| | | || || | Sbjct 35674109 ATTAT-CATGGC-TTCCATAT---TCGAG-GCCAAGTTTGATGCTCCCGCTTATGAAGTT 35674162 Query 782 GTTAGAGACTTTGGCTCCGCCGG-----AATCGGATATAGCG-TGGAGGTTGATTCTTAT 835 | | | ||| |||| | | || ||||| || | ||| | | ||||| || Sbjct 35674163 GATCCAC---TTGCCTCCACTGTCCCTCAAGCGGAT-TATCTATGGCGTATTATTCTGAT 35674218 Query 836 GATCGGAGCTCTTCCCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGCCTGAAACCGC 895 | | || |||||||| || || | || | |||||| | ||| ||||||||||| || Sbjct 35674219 GGTTGGTGCTCTTCCTGCTGCACTCACCTACTACTGGAGGATGAAGATGCCTGAAACTGC 35674278 Query 896 CAGATACACAGCATTGGTTGAGAACAATGTAGTCCAAGCAGCAAAAGACATG 947 | | ||||| || | |||| || |||| | ||| || ||||| || ||| Sbjct 35674279 CCGTTACACTGCCCTTGTTGCCAAGAATGCAAACCAGGCTGCAAATGATATG 35674330 Score = 41.0 bits (44), Expect = 0.48 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAAAT 178 ||| |||| ||| ||||||| ||||||||||||| Sbjct 35620103 TCAATCTCATTATATTGAAAAGATTCTTAAAAAAT 35620137 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 4552348 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 4552321 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 12818522 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 12818490 Score = 37.4 bits (40), Expect = 5.9 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 1873 TACTAAAGTTTCttttttgtttttgtttt 1901 ||||||||||||| ||| |||||||||| Sbjct 14856384 TACTAAAGTTTCTCTTT--TTTTTGTTTT 14856358 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 28982246 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 28982278 Score = 37.4 bits (40), Expect = 5.9 Identities = 46/59 (78%), Gaps = 3/59 (5%) Strand=Plus/Minus Query 65 CATATTC-CATATT-TGTCTCCAATAAGaaaaaatctccaaaaacacatt-caaatgaa 120 ||||| | ||| || ||||||||||| |||| || || ||||||| || ||||| || Sbjct 32053029 CATATACGCATTTTATGTCTCCAATATAAAAATATTTCTAAAAACAATTTGCAAATCAA 32052971 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 87.8 bits (96), Expect = 4e-15 Identities = 318/488 (65%), Gaps = 35/488 (7%) Strand=Plus/Minus Query 233 ACAGTGGTACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATA 292 ||| ||||||||||||| ||| || | |||| || ||||| ||||||| |||||||| Sbjct 22376217 ACAATGGTACCATTTCACAGCAATTGTGATCGCTGGCATGGGCTTTTTCACTGACGCATA 22376158 Query 293 CGATCTTTTCTGTATAGCTCCGATCATGAAAATGATAAGTCAAAT---ATATTACCACAA 349 ||||| || || || ||| | | | ||| || | | | | |||||| | | Sbjct 22376157 TGATCTCTTTTGCATCTCTCTGGTGACCAAACTGTTGGGCCGCTTGTACTATTACGAGGA 22376098 Query 350 AGACTC----AATC--GGAAC-CGCTCTTC-----TCTCAACTTCT-TA---CGCAAT-C 392 || ||| |||| || | | |||| |||| || || || || | | Sbjct 22376097 AGGCTCTCCTAATCCTGGCTCTCTGCCTTCAAATGTCTCGGCTGCTGTAAATAGCGTTGC 22376038 Query 393 GCTCTTCTTGGCACCGCGTTAGGTCAGCTCATCTTTGGTTACTTAGGTGACCGAGTCGGA 452 |||| | || ||| ||| || ||| ||||||| | | |||||| | | || Sbjct 22376037 CCTCTGC--GGAACCCTTGCAGGGCAACTCTTCTTTGGCTGGCTCGGTGACAAAATGGGC 22375980 Query 453 CG---TCGTAAAGTCTATGGACTTAGTCTCTTGATCATGGTGTTTAGCTCCTTTGGTTGT 509 || ||| || ||||| | | ||| || ||||||| || |||| ||| ||| Sbjct 22375979 CGCAAACGT---GTATATGGCATGACCCTCATGCTCATGGTCATTTGCTCAATTGCCTGT 22375923 Query 510 GGCTTCTCTGTTTGCACGA--CTCGACGTTCTTGTGTTATGGTTAGTCTTGGATTCTTTA 567 ||| | || || | | | | ||| | |||||||| || || | ||||| | Sbjct 22375922 GGCCTTTCCTTTGGAAAAAATCCCGAAG-----CTGTTATGGCTACACTGTGCTTCTTCA 22375868 Query 568 GATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGG 627 | ||| ||||| |||| || || || || || || ||||| ||||| || ||||| | Sbjct 22375867 GGTTCTGGCTTGGCTTTGGGATTGGCGGTGACTACCCGCTTTCTGCCACTATCATGTCTG 22375808 Query 628 AGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGT 687 ||| ||| ||||| | ||| || ||||| || || ||||| ||||| | |||||||| | Sbjct 22375807 AGTATGCCAACAAGAAGACCCGGGGAGCCTTCATTGCTGCAGTGTTTGCAATGCAAGGTT 22375748 Query 688 TAGGGATT 695 | || ||| Sbjct 22375747 TTGGAATT 22375740 Score = 62.6 bits (68), Expect = 1e-07 Identities = 255/399 (64%), Gaps = 41/399 (10%) Strand=Plus/Minus Query 542 TGTTATGGTTAGTCTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTA 601 |||||||| || || | ||||| || ||| ||||| |||| || || || || || Sbjct 22375893 TGTTATGGCTACACTGTGCTTCTTCAGGTTCTGGCTTGGCTTTGGGATTGGCGGTGACTA 22375834 Query 602 TCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTAT 661 || ||||| ||||| || ||||| |||| ||| ||||| | ||| || ||||| || || Sbjct 22375833 CCCGCTTTCTGCCACTATCATGTCTGAGTATGCCAACAAGAAGACCCGGGGAGCCTTCAT 22375774 Query 662 CGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTT----GATGAGCTCTGCTGTGACTA 717 ||||| ||||| | |||||||| || || ||| | | || | | |||| | || Sbjct 22375773 TGCTGCAGTGTTTGCAATGCAAGGTTTTGGAATTCTAGCCGGTGGGATG-GCTGCTATTA 22375715 Query 718 TGGTTGTGTGCTTGGCGTTCAAGA------ACGCTGGAGAGGGGAGTTCGGAGAAGACGA 771 | ||| | || || |||||| || ||| ||| || | | Sbjct 22375714 TAGTT-TCAGCA--GCTTTCAAGGCCAAATACCCTGCCCAGGC---TT--------ATAA 22375669 Query 772 ACGTGGCGGGGTTAGAGACT-TTGGCTCCGC-----CGGAATCGGATATAGCGTGGAGGT 825 | || || | | |||||||| | | ||| | ||| | ||| | Sbjct 22375668 A----------TTTGATAATATTGGCTCCACTCCTCCAGAAGCTGATTATGTCTGGCGAA 22375619 Query 826 TGATTCTTATGATCGGAGCTCTTCCCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGC 885 | ||| | ||| | ||||| | || || || | || | ||||||||| ||| |||| Sbjct 22375618 TAATTGTAATGTTTGGAGCAATCCCAGCTGCACTTACATATTACTGGCGCATGAAAATGC 22375559 Query 886 CTGAAACCGCCAGATACACAGCATTGGTTGAGAACAATG 924 ||||||| || | ||||| || ||||||| ||| |||| Sbjct 22375558 CTGAAACTGCTCGTTACACTGCCTTGGTTGCGAAGAATG 22375520 Score = 44.6 bits (48), Expect = 0.040 Identities = 27/29 (93%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1873 TACTAAAGTTTCttttttgtttttgtttt 1901 |||||||||||||||||| ||||| |||| Sbjct 16596433 TACTAAAGTTTCTTTTTTTTTTTTTTTTT 16596461 Score = 39.2 bits (42), Expect = 1.7 Identities = 31/35 (89%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 1020 TCTTCTTCCTCATACAAACTCTTCTCTCGC-CGTT 1053 |||| |||||||| ||| |||||||||||| |||| Sbjct 23753533 TCTT-TTCCTCATCCAACCTCTTCTCTCGCTCGTT 23753500 Score = 37.4 bits (40), Expect = 5.9 Identities = 32/39 (82%), Gaps = 3/39 (8%) Strand=Plus/Minus Query 364 CCGCTCTTCTCTCAACTTCTTACGCAATCGCTCTTCTTG 402 || ||||||||||||||||| | |||| ||||| ||| Sbjct 4880520 CCTCTCTTCTCTCAACTTCTAAAGCAA---CTCTTTTTG 4880485 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 7372987 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 7372960 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 73.4 bits (80), Expect = 8e-11 Identities = 84/113 (74%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 583 TTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAA 642 |||| ||||||||| |||| || || | || ||||| ||| | |||| | | ||||| | Sbjct 16499266 TTGGTATCGGTGGAAATTACCCGCTCTTTGCAACGATCATGGCTGAGTATTCAAACAAGA 16499207 Query 643 GGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATT 695 | | | || ||||| || ||||| || ||| | ||||||||||| || ||| Sbjct 16499206 GAGCTTGGGGGGCTTTCATTGCTGCAGTTTTCGCTATGCAAGGGTTTGGAATT 16499154 Score = 42.8 bits (46), Expect = 0.14 Identities = 50/68 (74%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 240 TACCATTTCAAAGCGATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATACGATCTT 299 ||||| |||| || || | |||| || |||| | |||||||| | ||||||||| Sbjct 16503251 TACCACTTCACCGCTGTAGTTATCGCTGGCATGGTGTTCTTCACCGATTCCTACGATCTT 16503192 Query 300 TTCTGTAT 307 ||||| || Sbjct 16503191 TTCTGCAT 16503184 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 8301413 TCAATCTCATTATATTGAAAACATTCTTAAAAA 8301445 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 10127428 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 10127396 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 13541107 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 13541134 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 66.2 bits (72), Expect = 1e-08 Identities = 82/113 (73%), Gaps = 6/113 (5%) Strand=Plus/Plus Query 583 TTGGAATCGGTGGAGATTATCCTCTTTCGGCCACGATTATGTCGGAGTTTGCTAACAAAA 642 |||| ||||| |||||||| || || || || || || ||| | |||| | | ||||| | Sbjct 3942221 TTGGTATCGGCGGAGATTACCCGCTCTCTGCAACAATCATGGCTGAGTATTCAAACAAGA 3942280 Query 643 GGACGCGTGGAGCTTTTATCGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATT 695 | || ||||| || ||||| || ||| | ||||||||||| || ||| Sbjct 3942281 GAACT------GCTTTCATTGCTGCAGTTTTCGCTATGCAAGGGTTTGGAATT 3942327 Score = 51.8 bits (56), Expect = 3e-04 Identities = 36/41 (88%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 1245 ACCATCCCTGGTTACTGGTTCACGGTCTATTTCATCGATAA 1285 ||| ||||||||||||||||||| || || |||||||| || Sbjct 1008666 ACCTTCCCTGGTTACTGGTTCACCGTGTACTTCATCGAGAA 1008626 Score = 39.2 bits (42), Expect = 1.7 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Plus Query 1869 TTGATACTAAAGTTTCttttttgtttttgtttt 1901 || |||||||||||||||| || ||||| |||| Sbjct 21424612 TTTATACTAAAGTTTCTTTATT-TTTTTCTTTT 21424643 Score = 39.2 bits (42), Expect = 1.7 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAAA 177 ||| |||| ||| ||||||| |||||||||||| Sbjct 21586262 TCAATCTCATTATATTGAAAAGATTCTTAAAAAA 21586295 Score = 39.2 bits (42), Expect = 1.7 Identities = 44/57 (77%), Gaps = 3/57 (5%) Strand=Plus/Minus Query 1876 TAAAGTTTCttttttgtttttgttttCTCTCAGTCT--CATGTTTACATAAATTTTT 1930 |||||||| | | ||| ||||| |||| || || |||||||||||||||| || Sbjct 25599009 TAAAGTTT-TAATATGTATTTGTAAACTCTAAGCCTTCCATGTTTACATAAATTATT 25598954 Score = 37.4 bits (40), Expect = 5.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1133 TCTCCTTCTCTCTCAAATCT 1152 |||||||||||||||||||| Sbjct 7958906 TCTCCTTCTCTCTCAAATCT 7958925 Score = 37.4 bits (40), Expect = 5.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1132 ATCTCCTTCTCTCTCAAATCTTT 1154 |||||| |||||||||||||||| Sbjct 7959001 ATCTCCCTCTCTCTCAAATCTTT 7959023 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 12714433 TCAATCTCATTATTTTGAAAAGATTCTTAAAAA 12714401 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 15526439 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 15526471 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 42.8 bits (46), Expect = 0.14 Identities = 32/37 (86%), Gaps = 2/37 (5%) Strand=Plus/Minus Query 1145 TCAAATCTTTAACTTCTCCAACAAACCCCTCAACTCC 1181 |||||||||| | ||||||||||| |||||| |||| Sbjct 24246549 TCAAATCTTTCA--TCTCCAACAAAACCCTCACCTCC 24246515 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 10710153 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 10710121 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 18048356 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 18048324 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 20797676 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 20797649 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 24071507 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 24071539 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 42.8 bits (46), Expect = 0.14 Identities = 29/33 (88%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||||||||||||||| Sbjct 14576205 TCAATCTCATTATATTGAAAAAATTCTTAAAAA 14576173 Score = 41.0 bits (44), Expect = 0.48 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 534 CGTTCTTGTGTTATGGTTAGTCTTGGATTCTT 565 ||| | ||||||||| |||| ||||||||||| Sbjct 977366 CGTGCATGTGTTATGTTTAGACTTGGATTCTT 977335 Score = 37.4 bits (40), Expect = 5.9 Identities = 32/39 (82%), Gaps = 2/39 (5%) Strand=Plus/Plus Query 1142 CTCTCAAATCTTTAACTTCTCCAACAAACCCCTCAACTC 1180 ||||||||| || ||||||||||| || | | |||||| Sbjct 5794214 CTCTCAAATTTTGAACTTCTCCAATAAGCAC--CAACTC 5794250 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 10881725 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 10881693 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 10962452 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 10962420 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 17656484 TCAATCTCATTATATTGAAAATATTCTTAAAAA 17656516 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 42.8 bits (46), Expect = 0.14 Identities = 31/35 (89%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 1880 GTTTCttttttgtttttgt--tttCTCTCAGTCTC 1912 ||||||||||| ||||| | |||||||||||||| Sbjct 13338847 GTTTCTTTTTTATTTTTCTCTTTTCTCTCAGTCTC 13338813 Score = 41.0 bits (44), Expect = 0.48 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAAAT 178 ||| |||| ||| ||||||| ||||||||||||| Sbjct 29850204 TCAATCTCATTATATTGAAAAGATTCTTAAAAAAT 29850170 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 18130956 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 18130988 Score = 37.4 bits (40), Expect = 5.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1130 CAATCTCCTTCTCTCTCAAATCT 1152 || |||||||||||||||||||| Sbjct 18852780 CAGTCTCCTTCTCTCTCAAATCT 18852758 Score = 37.4 bits (40), Expect = 5.9 Identities = 38/47 (81%), Gaps = 2/47 (4%) Strand=Plus/Plus Query 15 AAGTGGACTCGAT-CCAGGGAGGTGTTGTGTTCCTCACAGTCAAACC 60 ||| |||||| | ||| ||| |||||| ||| ||||||||||||| Sbjct 19832537 AAGAGGACTCCAGGCCAAGGAC-TGTTGTATTCTTCACAGTCAAACC 19832582 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 25605561 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 25605588 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.7 Identities = 29/33 (88%), Gaps = 2/33 (6%) Strand=Plus/Plus Query 1127 AAGCAATCTCCTTCTCTCTCAAATCTTTAACTT 1159 ||||| ||| ||||||||||||||||| |||| Sbjct 34610861 AAGCACTCT--TTCTCTCTCAAATCTTTCACTT 34610891 Score = 37.4 bits (40), Expect = 5.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1909 TCTCATGTTTACATAAATTT 1928 |||||||||||||||||||| Sbjct 22463230 TCTCATGTTTACATAAATTT 22463211 Score = 37.4 bits (40), Expect = 5.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 154 TATCTTGAAAAAATTCTTAAAAAAT 178 ||| ||||||| ||||||||||||| Sbjct 23560750 TATATTGAAAAGATTCTTAAAAAAT 23560774 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 1.7 Identities = 31/35 (89%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 926 AGTCCAAGCAGCAAAAGACATGCAAA-GAGTCATG 959 |||||||||||||||| | | ||||| |||||||| Sbjct 29727834 AGTCCAAGCAGCAAAA-AAAGGCAAATGAGTCATG 29727867 Score = 39.2 bits (42), Expect = 1.7 Identities = 31/35 (89%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 926 AGTCCAAGCAGCAAAAGACATGCAAA-GAGTCATG 959 |||||||||||||||| | | ||||| |||||||| Sbjct 29728474 AGTCCAAGCAGCAAAA-AAAGGCAAATGAGTCATG 29728507 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 5071077 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 5071045 Score = 37.4 bits (40), Expect = 5.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 161 AAAAAATTCTTAAAAAATCGACGAA 185 |||||||||||||||| || ||||| Sbjct 5251462 AAAAAATTCTTAAAAATTCAACGAA 5251438 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 23279378 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 23279346 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 25703422 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 25703395 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1096 ATTGGTTCCTAGTGGACGTCGTCTTCTA 1123 ||| |||||| |||| |||||||||||| Sbjct 26681750 ATTTGTTCCTCGTGGCCGTCGTCTTCTA 26681723 >Query1 on lcl|JrScfU0040| Query1 on lcl|JrScfU0040 Length=23378 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 5053 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 5021 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 6552612 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 6552580 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 12299281 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 12299249 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 21023930 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 21023898 Score = 37.4 bits (40), Expect = 5.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1869 TTGATACTAAAGTTTCttttttgttttt 1896 || |||||||||||| |||||| ||||| Sbjct 22538219 TTAATACTAAAGTTTTTTTTTTTTTTTT 22538192 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 3130779 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 3130811 Score = 37.4 bits (40), Expect = 5.9 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 144 TCATTCTCCGTATCTTGAAAAAATTCTTAAAAA 176 ||| |||| ||| ||||||| ||||||||||| Sbjct 16612869 TCAATCTCATTATATTGAAAAGATTCTTAAAAA 16612837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1034585662455 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2