BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=2384 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr3D 430 3e-118 lcl|Jr1D 42.8 0.17 lcl|Jr8S 41.0 0.59 lcl|Jr7D 41.0 0.59 lcl|Jr6D 41.0 0.59 lcl|Jr5S 41.0 0.59 lcl|Jr4D 41.0 0.59 lcl|Jr2D 41.0 0.59 lcl|Jr7S 39.2 2.1 lcl|Jr6S 39.2 2.1 lcl|Jr5D 39.2 2.1 lcl|Jr4S 39.2 2.1 lcl|Jr2S 39.2 2.1 lcl|Jr1S 39.2 2.1 lcl|Jr8D 37.4 7.2 lcl|Jr3S 37.4 7.2 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 430 bits (476), Expect = 3e-118 Identities = 598/835 (72%), Gaps = 22/835 (3%) Strand=Plus/Plus Query 1278 TTTGTTTACAGTGCACCAAACCCAGGACAAGCAGCGGCTGCTGCCGCTCCCGTCGCTGTA 1337 ||||| ||||| || |||||||||||||||| || ||| | || || || || ||||| Sbjct 25492734 TTTGTGTACAGCGCTACAAACCCAGGACAAGCTGCAGCTACGGCTGCACCAGTTGCTGTG 25492793 Query 1338 TTTGTAGGTGTGGCCAGTATCTCCTCAGCCGCATTGCCTCTAAGTAAGATCTTTCCAATA 1397 || || ||||| || | ||||| | || || || ||||| || |||| |||||| | Sbjct 25492794 TTCGTTGGTGTAACCGGAATCTCTTTTGCAGCCTTTCCTCTTAGCAAGAGCTTTCCTCTG 25492853 Query 1398 GCTCTATCACAAGCCTTAGCCTGTGGAGTAGCAGGAGCCATAGTATTCGACAGAATCATC 1457 ||| | | || || ||||||||||||| || ||||| | | | ||| ||| ||| Sbjct 25492854 GCTGTGGCTCAGGCTTTAGCCTGTGGAGCTGCTGGAGCAGTCCTTGTAAACAAAATTATC 25492913 Query 1458 CGCAAACAGCTCGGTCACCTCCTAGCTAAA---ACAAAATCACCAGAAACATCTCAAAA- 1513 || || ||||| ||||| ||||| | ||| || | ||| | || | || | ||||| Sbjct 25492914 CGAAATCAGCTGGGTCATCTCCTTGTTAAGTCCACTACATCGCAAGCA-CAGC-CAAAAG 25492971 Query 1514 ------CCAACC----CAAAACCATTGGTTTCCTCTCCGATATCGCAGGACCAACAGGTA 1563 || || ||||| ||||| || || || | ||| || || |||| |||| Sbjct 25492972 AGGAAGCCGTCCTCAACAAAAATATTGGGTTGCTTTCTGCTATTGCGGGGCCAAAGGGTA 25493031 Query 1564 CACAACTCGAAATAGTCTACGGAATCTTTGGCTATATGCAAGTCCTCTCCGCTTGCTTCA 1623 | || || || || || || || | || || || ||||| |||||||| || ||||||| Sbjct 25493032 CCCAGCTGGAGATTGTTTATGGGGTATTCGGGTACATGCAGGTCCTCTCAGCCTGCTTCA 25493091 Query 1624 TGTCATTCGCTCACGGAGGCAACGACGTCTCCAACGCAATCGGACCATTAGCCGCCGCAT 1683 ||||||| || || ||||| || || || || || ||||| || || | || || |||| Sbjct 25493092 TGTCATTTGCCCATGGAGGAAATGATGTATCTAATGCAATAGGTCCTCTGGCTGCTGCAT 25493151 Query 1684 TAAGCATTCTCCAAAACGGAGCAGCTGCAGGAGGAGCCGAGATCGTTATCCCAATGGATG 1743 || || || || | || | | || ||| | || || ||||| |||| |||| Sbjct 25493152 TATCTATACTTCAT------GGAGGTACCGGTGGAACTGATATTGTTATTCCAACTGATG 25493205 Query 1744 TTCTCGCTTGGGGAGGATTCGGAATCGTTGCTGGTCTCACAATGTGGGGATACAGAGTCA 1803 |||| || ||||||||| | || || ||||| || || ||||||||||| || ||||| | Sbjct 25493206 TTCTTGCATGGGGAGGACTTGGGATTGTTGCAGGGCTGACAATGTGGGGGTATAGAGTGA 25493265 Query 1804 TCGCAACGATAGGGAAGAAGATCACTGAGCTAACACCAACAAGAGGATTCGCTGCGGAAT 1863 | ||||| || ||||||||||| || || || |||||||| ||||||||||| || || | Sbjct 25493266 TAGCAACAATTGGGAAGAAGATAACAGAACTCACACCAACTAGAGGATTCGCAGCTGAGT 25493325 Query 1864 TCGCCGCCGCGTCGGTTGTTTTGTTTGCTTCGAAATTAGGGCTTCCGATTTCTGCGACTC 1923 | || || || || || ||| | ||||| ||||| | |||||||| || || || || | Sbjct 25493326 TTGCTGCGGCCTCCGTGGTTCTATTTGCATCGAAGCTGGGGCTTCCAATCTCGGCAACCC 25493385 Query 1924 ATACACTTGTTGGTGCTGTGATGGGTGTTGGTTTCGCTAGAGGGCTTAATAGTGTGAGAG 1983 | || || || ||||| || ||||| || || || || ||||| || |||||||| |||| Sbjct 25493386 ACACTCTAGTAGGTGCAGTCATGGGCGTGGGGTTTGCAAGAGGACTCAATAGTGTTAGAG 25493445 Query 1984 CTGAGACTGTGAGAGAGATCGTTGCTTCGTGGCTTGTCACCATTCCCGTTGGTGCTACAC 2043 | ||||| |||| ||||| || | ||| ||| || || ||||| || ||| || | Sbjct 25493446 CAGAGACGGTGAAGGAGATTGTGGTTTCTTGGGCCGTTACAATTCCAGTCGGTTCTCTCC 25493505 Query 2044 TCGCCGTTATCTACACTTGGATTTTCACCAAGATCTTATCTTTTGTATTGTGAGT 2098 | | ||| ||| || ||||| |||||||| | || |||| | | |||||||| Sbjct 25493506 TTTCAGTTGCCTATACATGGATATTCACCAAACTTTTGTCTTATATTTTGTGAGT 25493560 Score = 291 bits (322), Expect = 2e-76 Identities = 317/421 (75%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 668 TGGAATGGCTCAAGCCTTTCACATTTCTTCCACAACAGCAAGGGCAATCTCTATAGTCAT 727 ||||||||||||||| |||||||| |||| | || || || || | |||| ||| Sbjct 25489809 TGGAATGGCTCAAGCTTTTCACATAACTTCAAGCACTGCTTCTGCTATTTATATATGCAT 25489868 Query 728 CGCCTTCTCTGCTCTCACCCTTCCAATCTTCATGAAGTCCCTGGGACAAGGACTGGCTCT 787 || ||| |||||| | ||||| | || |||||||| |||| || || || | | Sbjct 25489869 AGCGTTCGTGGCTCTCTGCTTTCCATTATTTATGAAGTCTTTGGGGCAGGGGTTGTCCTT 25489928 Query 788 CAAGACCAAGCTTCTCTCTTACGCAACACTACTCTTTGGTTTCTACATGGCCTGGAACAT 847 ||||||||| | | || || ||||| || || | ||| || |||||||| ||||| || Sbjct 25489929 GAAGACCAAGATGTTGTCATATGCAACTCTGCTATCTGGGTTTTACATGGCTTGGAATAT 25489988 Query 848 CGGAGCTAATGATGTCGCAAATGCCATGGGGACTTCTGTTGGATCTGGAGCCTTGACAAT 907 ||||| |||||||| || |||||||||||||| ||||| || || || || ||| | | Sbjct 25489989 TGGAGCCAATGATGTGGCCAATGCCATGGGGACCTCTGTAGGTTCGGGCGCATTGTCGCT 25490048 Query 908 CCGGCAAGCTGTGATGACAGCTGCAGTTCTCGAATTCTCAGGTGCTCTTTTGATGGGAAC 967 ||| || || ||| |||| || || ||| | || ||| | || || | |||||||| || Sbjct 25490049 CCGACAGGCCGTGTTGACGGCCGCGGTTTTGGAGTTCACCGGGGCATTGTTGATGGGCAC 25490108 Query 968 TCACGTGACTAGCACGATGCAGAAAGGAATTCTCATGGCTAATGTGTTCCAAGGGAAAGA 1027 || ||||| || ||||||||||| || ||||| | |||||||||||| | || ||||| Sbjct 25490109 CCATGTGACGAGTACGATGCAGAAGGGCATTCTTGTCGCTAATGTGTTCAAGGGAAAAGA 25490168 Query 1028 TATGTTGCTCTTTGCTGGTCTCCTCTCTTCCTTAGCTGCAGCTGGAACTTGGTTACAGGT 1087 |||| ||||||| |||| | |||||||| || ||||| ||||| |||||||| ||||| Sbjct 25490169 TATGCTGCTCTTCTCTGGATTGCTCTCTTCGTTGGCTGCTGCTGGTACTTGGTTGCAGGT 25490228 Query 1088 A 1088 | Sbjct 25490229 A 25490229 Score = 167 bits (184), Expect = 6e-39 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 1084 AGGTAGCTTCTTACTATGGATGGCCAGTATCAACAACTCACTGTATCGTCGGATCAATGG 1143 |||| || || || ||||| ||||| || || || || || ||||| || |||||||||| Sbjct 25492186 AGGTTGCATCCTATTATGGTTGGCCCGTCTCCACGACACATTGTATAGTAGGATCAATGG 25492245 Query 1144 TTGGGTTTGGGCTTGTATATGGAGGAGCTGGTGCCGTTTTCTGGAGTTCCCTAGCTAAAG 1203 |||| ||||| ||||| || |||||| ||||||| || ||||||||||| || || | | Sbjct 25492246 TTGGATTTGGACTTGTCTACGGAGGACCTGGTGCTGTCTTCTGGAGTTCACTGGCAAGGG 25492305 Query 1204 TAGCTTCATCTTGGGTCATCTCTCCTATACTGGGAGCTCTTGTCTCCTTCCTAGTCTACA 1263 || |||| || ||||| ||||| || || ||||||| || || ||||| || ||||||| Sbjct 25492306 TAACTTCTTCATGGGTGATCTCGCCAGTAATGGGAGCACTGGTGTCCTTTCTTGTCTACA 25492365 Query 1264 AATGCAT 1270 ||||||| Sbjct 25492366 AATGCAT 25492372 Score = 39.2 bits (42), Expect = 2.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 883 CTGTTGGATCTGGAGCCTTGACAATC 908 |||||||| ||||| ||||||||||| Sbjct 573967 CTGTTGGAACTGGAACCTTGACAATC 573992 Score = 39.2 bits (42), Expect = 2.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 43 TTTATTCTTCTTTTTTACAAGTGGGCATTTG 73 |||||| || ||||||||||||| || |||| Sbjct 10647705 TTTATTTTTATTTTTTACAAGTGTGCTTTTG 10647675 Score = 37.4 bits (40), Expect = 7.2 Identities = 38/49 (78%), Gaps = 2/49 (4%) Strand=Plus/Minus Query 2100 TCTGTTTCTTTTGGTTTTGTTA--TACGAAGAACATGAAATTGATCTTC 2146 ||||||||||| | |||||||| | ||||| | ||||| ||| ||| Sbjct 4649070 TCTGTTTCTTTAGTTTTTGTTAGGGAAAAAGAAGAAGAAATGGATTTTC 4649022 Score = 37.4 bits (40), Expect = 7.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 35 AAATCATTTTTATTCTTCTTTTT 57 ||||||||||||||||||| ||| Sbjct 7744741 AAATCATTTTTATTCTTCTATTT 7744719 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 38 TCATTTTTATTCTTCTTTTT 57 |||||||||||||||||||| Sbjct 26549522 TCATTTTTATTCTTCTTTTT 26549541 Score = 37.4 bits (40), Expect = 7.2 Identities = 38/49 (78%), Gaps = 2/49 (4%) Strand=Plus/Plus Query 2100 TCTGTTTCTTTTGGTTTTGTTA--TACGAAGAACATGAAATTGATCTTC 2146 ||||||||||| | |||||||| | ||||| | ||||| ||| ||| Sbjct 36280697 TCTGTTTCTTTAGTTTTTGTTAGGGAAAAAGAAGAAGAAATGGATTTTC 36280745 Score = 37.4 bits (40), Expect = 7.2 Identities = 38/49 (78%), Gaps = 2/49 (4%) Strand=Plus/Minus Query 2100 TCTGTTTCTTTTGGTTTTGTTA--TACGAAGAACATGAAATTGATCTTC 2146 ||||||||||| | |||||||| | ||||| | ||||| ||| ||| Sbjct 38527739 TCTGTTTCTTTAGTTTTTGTTAGGGAAAAAGAAGAAGAAATGGATTTTC 38527691 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 42.8 bits (46), Expect = 0.17 Identities = 38/47 (81%), Gaps = 2/47 (4%) Strand=Plus/Minus Query 20 AAGAACAAA--ATTCCCAAATCATTTTTATTCTTCTTTTTTACAAGT 64 ||||| ||| | ||||| |||| ||||| ||||||||||| |||| Sbjct 36649479 AAGAAGAAATGACTCCCACTTCATGTTTATGCTTCTTTTTTATAAGT 36649433 Score = 41.0 bits (44), Expect = 0.59 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 1976 TGTGAGAGCTGAGACTGTGAGAGAGAT 2002 |||||||||||||||| || ||||||| Sbjct 15212159 TGTGAGAGCTGAGACTTTGGGAGAGAT 15212185 Score = 41.0 bits (44), Expect = 0.59 Identities = 36/44 (82%), Gaps = 1/44 (2%) Strand=Plus/Plus Query 464 CACTGCCCAATTCCTTTCTCCTCAGAAACACACTTCTCTTCCTC 507 || |||||||| ||| | |||| | ||| |||||||||||||| Sbjct 31680130 CATTGCCCAATCTCTTCC-CCTCCGTAACCCACTTCTCTTCCTC 31680172 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1486 AAACAAAATCACCAGAAACA 1505 |||||||||||||||||||| Sbjct 21877973 AAACAAAATCACCAGAAACA 21877992 Score = 37.4 bits (40), Expect = 7.2 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1977 GTGAGAGCTGAGACTGTGAGAGAGATCG 2004 ||||||| | |||| ||||||||||||| Sbjct 32350074 GTGAGAGATCAGACCGTGAGAGAGATCG 32350101 Score = 37.4 bits (40), Expect = 7.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1 CTTTGACTACATCCAAACAAAGAACAAAAT 30 ||||| ||| || |||||||||||| |||| Sbjct 34066671 CTTTGCCTATATACAAACAAAGAACGAAAT 34066700 Score = 37.4 bits (40), Expect = 7.2 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 17 ACAAAGAACAAAATTCCCAAATCATTTTTATT 48 ||||| || ||| |||||||||||||||| || Sbjct 41667645 ACAAA-AATAAAGTTCCCAAATCATTTTTTTT 41667615 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 41.0 bits (44), Expect = 0.59 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 36 AATCATTTTTATTCTTCTTTTTTACAA 62 ||||||||||||| |||||||||| || Sbjct 16709414 AATCATTTTTATTTTTCTTTTTTAAAA 16709388 Score = 37.4 bits (40), Expect = 7.2 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1488 ACAAAATCACCAGAAACATCTCAAAACCAACCCAAAAC 1525 ||| || ||||| || || |||||||||||| ||||| Sbjct 2212586 ACACAACCACCATAATCAAATCAAAACCAACCAAAAAC 2212623 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 37 ATCATTTTTATTCTTCTTTTTTACA 61 |||||||||||| |||||||| ||| Sbjct 15419827 ATCATTTTTATTATTCTTTTTCACA 15419851 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 41.0 bits (44), Expect = 0.59 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 2084 TTTTGTATTGTGAGTTTCTGTTTCTTTTGGTT 2115 |||| | ||||| |||| |||||||||||||| Sbjct 3572878 TTTTTTGTTGTGTGTTTTTGTTTCTTTTGGTT 3572847 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2188 CTAAAGTTATCATCTTTCGATTTTT 2212 |||||||||||||||| |||| ||| Sbjct 10039907 CTAAAGTTATCATCTTACGATATTT 10039931 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2138 TTGATCTTCTTCTTCTATGTTCGTT 2162 |||||||||||||||| | |||||| Sbjct 18757816 TTGATCTTCTTCTTCTGTTTTCGTT 18757840 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 41.0 bits (44), Expect = 0.59 Identities = 31/36 (86%), Gaps = 2/36 (6%) Strand=Plus/Plus Query 37 ATCATTTTTATTCTTC--TTTTTTACAAGTGGGCAT 70 |||| ||||||||||| ||||||||||| ||||| Sbjct 4132411 ATCAATTTTATTCTTCATATTTTTACAAGTAGGCAT 4132446 Score = 39.2 bits (42), Expect = 2.1 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2138 TTGATCTTCTTCTTCTATGTT 2158 ||||||||||||||||||||| Sbjct 3570467 TTGATCTTCTTCTTCTATGTT 3570447 Score = 37.4 bits (40), Expect = 7.2 Identities = 37/46 (80%), Gaps = 3/46 (7%) Strand=Plus/Minus Query 18 CAAAGAACAAAATTCCCAAATCA-TTTTTATTCTTCTTTTTTACAA 62 |||| |||||||| || | ||| ||||||||||| | | |||||| Sbjct 96660 CAAAAAACAAAAT--CCTAGTCAATTTTTATTCTTTTCTATTACAA 96617 Score = 37.4 bits (40), Expect = 7.2 Identities = 46/59 (78%), Gaps = 3/59 (5%) Strand=Plus/Plus Query 2 TTTGACTACATCCAAACAAAGAACAAAAT-TCCCAAATCATTTTTATTCTTCTTTTTTA 59 ||| |||| |||||| |||| | |||| || | || || |||||||||||| ||||| Sbjct 3372925 TTTAACTA-ATCCAATGAAAGTGCTAAATATCACCAA-CACTTTTATTCTTCTATTTTA 3372981 Score = 37.4 bits (40), Expect = 7.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1808 AACGATAGGGAAGAAGATCACTG 1830 ||||||||||| ||||||||||| Sbjct 6211441 AACGATAGGGATGAAGATCACTG 6211419 Score = 37.4 bits (40), Expect = 7.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1808 AACGATAGGGAAGAAGATCACTG 1830 ||||||||||| ||||||||||| Sbjct 6219463 AACGATAGGGATGAAGATCACTG 6219441 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2349 AAAACGTCATAACTTTTTAA 2368 |||||||||||||||||||| Sbjct 25492376 AAAACGTCATAACTTTTTAA 25492357 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 41.0 bits (44), Expect = 0.59 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 248 TCCCATTATGCAAatccattttcatca 274 ||||||||||||||| | ||||||||| Sbjct 7108966 TCCCATTATGCAAATTCCTTTTCATCA 7108940 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2090 ATTGTGAGTTTCTGTTTCTTTTGGT 2114 ||| |||||||||||||| |||||| Sbjct 8417653 ATTATGAGTTTCTGTTTCATTTGGT 8417677 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 38 TCATTTTTATTCTTCTTTTT 57 |||||||||||||||||||| Sbjct 31827665 TCATTTTTATTCTTCTTTTT 31827684 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 41.0 bits (44), Expect = 0.59 Identities = 36/44 (82%), Gaps = 1/44 (2%) Strand=Plus/Plus Query 464 CACTGCCCAATTCCTTTCTCCTCAGAAACACACTTCTCTTCCTC 507 ||||||||||| ||| | |||| | || |||||||||||||| Sbjct 10739792 CACTGCCCAATCTCTTCC-CCTCCGTAATCCACTTCTCTTCCTC 10739834 Score = 39.2 bits (42), Expect = 2.1 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1980 AGAGCTGAGACTGTGAGAGAGATCGTTGC 2008 ||||||||||| | ||||||||| ||||| Sbjct 33027266 AGAGCTGAGACAGAGAGAGAGATGGTTGC 33027294 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 42 TTTTATTCTTCTTTTTTACAAGTGG 66 |||| || ||||||||||||||||| Sbjct 3234965 TTTTTTTTTTCTTTTTTACAAGTGG 3234941 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 37 ATCATTTTTATTCTTCTTTTTTACA 61 ||||||||||||||| |||||| || Sbjct 7004887 ATCATTTTTATTCTTATTTTTTTCA 7004863 Score = 37.4 bits (40), Expect = 7.2 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1273 GGAGATTTGTTTACAGTGCACCAAACC 1299 |||| |||| ||||||||||||||||| Sbjct 17111382 GGAG-TTTGGTTACAGTGCACCAAACC 17111407 Score = 37.4 bits (40), Expect = 7.2 Identities = 39/51 (76%), Gaps = 8/51 (16%) Strand=Plus/Minus Query 17 ACAAAGAACAAAATT------CCCAAATCAT--TTTTATTCTTCTTTTTTA 59 ||||||||| || || | |||||| | |||||||||||||||||| Sbjct 23853811 ACAAAGAACCAATTTTTGTCACTCAAATCCTGTTTTTATTCTTCTTTTTTA 23853761 Score = 37.4 bits (40), Expect = 7.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 22 GAACAAAATTCCCAAATCATTTTTATTCTT 51 ||| |||| ||||||||||||| |||||| Sbjct 30562174 GAAGAAAACTCCCAAATCATTTCCATTCTT 30562203 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 41.0 bits (44), Expect = 0.59 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 990 AAAGGAATTCTCATGGCTAATG 1011 |||||||||||||||||||||| Sbjct 18711662 AAAGGAATTCTCATGGCTAATG 18711641 Score = 39.2 bits (42), Expect = 2.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 32 CCCAAATCATTTTTATTCTTCTTTTT 57 |||||||||||||| || |||||||| Sbjct 6764928 CCCAAATCATTTTTCTTTTTCTTTTT 6764903 Score = 39.2 bits (42), Expect = 2.1 Identities = 33/41 (80%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 2077 TCTTATCTTTTGTATTGTGAGTTTCTGTTTCTTTTGGTTTT 2117 |||| ||||||||||| | ||||| |||||||| |||| Sbjct 39603881 TCTTTTCTTTTGTATTTTCTTTTTCTTTTTCTTTTTCTTTT 39603921 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1498 CAGAAACATCTCAAAACCAA 1517 |||||||||||||||||||| Sbjct 13453319 CAGAAACATCTCAAAACCAA 13453338 Score = 37.4 bits (40), Expect = 7.2 Identities = 32/38 (84%), Gaps = 4/38 (11%) Strand=Plus/Minus Query 2086 TTGTATTGTGAGTTTCTGTTTCTT-TTGGTTTTGTTAT 2122 ||||||||||||||| |||||| | |||||| |||| Sbjct 19877164 TTGTATTGTGAGTTT---TTTCTTATGGGTTTTCTTAT 19877130 Score = 37.4 bits (40), Expect = 7.2 Identities = 34/41 (83%), Gaps = 3/41 (7%) Strand=Plus/Plus Query 58 TACAAGTGGGCATTTGTGAGGTTGTGAGGCCCAACCAAAAG 98 || ||||||| ||||| || ||||| ||||||||||||| Sbjct 37603745 TAAAAGTGGG--TTTGTCAG-TTGTGGAGCCCAACCAAAAG 37603782 Score = 37.4 bits (40), Expect = 7.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 2084 TTTTGTATTGTGAGTTTCTGTTTCTTTTGGTTT 2116 ||||||||||| | ||| ||||| ||||| ||| Sbjct 43121370 TTTTGTATTGTAACTTTTTGTTTTTTTTGTTTT 43121402 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 2.1 Identities = 46/60 (77%), Gaps = 3/60 (5%) Strand=Plus/Plus Query 1308 GCAGCGGCTGCTGCCGCTCCCGTCGCTG-TATT--TGTAGGTGTGGCCAGTATCTCCTCA 1364 |||| ||||||||||||| ||| |||| | || ||| | ||||||| | | |||||| Sbjct 1266486 GCAGGGGCTGCTGCCGCTGCCGCTGCTGCTGTTGCTGTTGCTGTGGCCTTTGTGTCCTCA 1266545 Score = 39.2 bits (42), Expect = 2.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 389 TTCTCATCTCTGCACACCCAGATCAGCTCTT 419 || |||||| ||||||||||||||||||| Sbjct 3441462 TTATCATCTAACCACACCCAGATCAGCTCTT 3441492 Score = 37.4 bits (40), Expect = 7.2 Identities = 29/32 (91%), Gaps = 2/32 (6%) Strand=Plus/Plus Query 2120 TATACGAAGAACATGAAATTGATCTTC-TTCT 2150 ||||| ||||||||||| ||||||||| |||| Sbjct 2295908 TATAC-AAGAACATGAACTTGATCTTCATTCT 2295938 Score = 37.4 bits (40), Expect = 7.2 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 2 TTTGACTAC-ATCCAAACAAAGAACAA 27 ||||| ||| ||||||||||||||||| Sbjct 9189295 TTTGATTACCATCCAAACAAAGAACAA 9189321 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 2.1 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 714 ATCTCTATAGTCATCGCCTTCTCTGCTCTCACCCTT 749 |||||| |||||| ||| | ||||||||||| ||| Sbjct 17440556 ATCTCTCCAGTCATTGCCGTATCTGCTCTCACTCTT 17440521 Score = 39.2 bits (42), Expect = 2.1 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 2129 AACATGAAATTGATCTTCTTCTTC 2152 |||||||||||||||||||| ||| Sbjct 20753282 AACATGAAATTGATCTTCTTGTTC 20753259 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2343 ATCGTAAAAACGTCATAACTTTTTA 2367 ||||||||||| |||||| |||||| Sbjct 1172249 ATCGTAAAAACCTCATAAGTTTTTA 1172225 Score = 37.4 bits (40), Expect = 7.2 Identities = 32/39 (82%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 2176 TTTGAAAAAACCCTAAAGTTATCATCTTTCGATTTTTTC 2214 |||| |||||||||||||||| ||||| |||| ||| Sbjct 15529176 TTTGTTAAAACCCTAAAGTTATATTCTTT--ATTTCTTC 15529140 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 39.2 bits (42), Expect = 2.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1977 GTGAGAGCTGAGACTGTGAGAGAGAT 2002 ||| |||||||||| ||||||||||| Sbjct 18126520 GTGTGAGCTGAGACAGTGAGAGAGAT 18126545 Score = 39.2 bits (42), Expect = 2.1 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1490 AAAATCACCAGAAACATCTCAAAACCAACCCAAAAC 1525 |||| || || ||| | ||||||||||||| ||||| Sbjct 29963154 AAAAACAACAAAAAAAACTCAAAACCAACCGAAAAC 29963189 Score = 37.4 bits (40), Expect = 7.2 Identities = 27/29 (93%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 340 TTCCTTATCGTTTCTCTTCCGT-TAGAAA 367 |||||| ||||||||||||||| |||||| Sbjct 8650934 TTCCTT-TCGTTTCTCTTCCGTGTAGAAA 8650907 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1498 CAGAAACATCTCAAAACCAA 1517 |||||||||||||||||||| Sbjct 29699083 CAGAAACATCTCAAAACCAA 29699102 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 39.2 bits (42), Expect = 2.1 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 449 TTTCTTCAGGAAGAACACTGCCCA 472 ||||||||| |||||||||||||| Sbjct 20955367 TTTCTTCAGTAAGAACACTGCCCA 20955390 Score = 39.2 bits (42), Expect = 2.1 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Minus Query 794 CAAGCTTCTCTCTTACGCAACACTACTCTTTGGTTT 829 ||||||||||| ||||||| || || ||||||||| Sbjct 27161058 CAAGCTTCTCTGCTACGCAATAC-ACGCTTTGGTTT 27161024 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 2.1 Identities = 40/50 (80%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 2115 TTTGTTATACGAAGAACATGAAATTGATCTTCT-TC-TTCTATGTTCGTT 2162 |||| || | || ||| |||||||||||| ||| || || ||||||| || Sbjct 36206754 TTTGATAAAAGAGGAAGATGAAATTGATCATCTATCTTTATATGTTCCTT 36206803 Score = 37.4 bits (40), Expect = 7.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1979 GAGAGCTGAGACTGTGAGAGAGA 2001 ||||||||| ||||||||||||| Sbjct 19865523 GAGAGCTGAAACTGTGAGAGAGA 19865545 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 38 TCATTTTTATTCTTCTTTTTTACAA 62 ||||||||||| ||||||||| ||| Sbjct 36635271 TCATTTTTATTTTTCTTTTTTTCAA 36635247 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 2.1 Identities = 37/45 (82%), Gaps = 2/45 (4%) Strand=Plus/Minus Query 2079 TTATCTTTT-GTATTGTGAGTTTCTGTTTCTTTTGGTTTTGTTAT 2122 ||||||||| || || | ||| | | |||||||||||||| |||| Sbjct 22074620 TTATCTTTTAGTTTTTTTAGTCTTT-TTTCTTTTGGTTTTATTAT 22074577 Score = 39.2 bits (42), Expect = 2.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 2091 TTGTGAGTTTCTGTTTCTTTTGGTTT 2116 || ||||||||||||||||||| ||| Sbjct 23463773 TTCTGAGTTTCTGTTTCTTTTGTTTT 23463798 Score = 37.4 bits (40), Expect = 7.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 2092 TGTGAGTTTCTGTTTCTTTTGGTTTTGTTA 2121 ||||||| ||| ||||||||||| ||||| Sbjct 125573 TGTGAGTATCTTCTTCTTTTGGTTATGTTA 125544 Score = 37.4 bits (40), Expect = 7.2 Identities = 38/49 (78%), Gaps = 2/49 (4%) Strand=Plus/Minus Query 2100 TCTGTTTCTTTTGGTTTTGTTA--TACGAAGAACATGAAATTGATCTTC 2146 ||||||||||| | |||||||| | ||||| | ||||| ||| ||| Sbjct 3921262 TCTGTTTCTTTAGTTTTTGTTAGGGAAAAAGAAGAAGAAATGGATTTTC 3921214 Score = 37.4 bits (40), Expect = 7.2 Identities = 27/29 (93%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 1879 TTGTTTTGTTT-GCTTCGAAATTAGGGCT 1906 ||||||||||| ||||| ||||||||||| Sbjct 5005721 TTGTTTTGTTTGGCTTC-AAATTAGGGCT 5005694 Score = 37.4 bits (40), Expect = 7.2 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 27 AAATTCCCAAATCATTTTTATTCTTCTTT 55 |||||| |||| |||||||||||||||| Sbjct 14060360 AAATTC--AAATAATTTTTATTCTTCTTT 14060334 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1133 CGGATCAATGGTTGGGTTTGGGCTT 1157 || ||||||||||||||||| |||| Sbjct 17787852 CGAATCAATGGTTGGGTTTGAGCTT 17787828 Score = 37.4 bits (40), Expect = 7.2 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 2090 ATTGTGAGTTTCTGTTTCTTTTGGTTTT 2117 || || ||||||||||||||| |||||| Sbjct 24734631 ATGGTAAGTTTCTGTTTCTTTGGGTTTT 24734658 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 7.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2233 ATCAAAGCTTGTACCTTTCTTGT 2255 |||||||||||||||||| |||| Sbjct 14295054 ATCAAAGCTTGTACCTTTGTTGT 14295032 Score = 37.4 bits (40), Expect = 7.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2233 ATCAAAGCTTGTACCTTTCTTGT 2255 |||||||||||||||||| |||| Sbjct 14352126 ATCAAAGCTTGTACCTTTGTTGT 14352104 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 37.4 bits (40), Expect = 7.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 35 AAATCATTTTTATTCTTCTTTTTTA 59 |||||||||||||| |||| ||||| Sbjct 4355071 AAATCATTTTTATTTTTCTCTTTTA 4355095 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 2364 TTTAAACGACATCGtttttt 2383 |||||||||||||||||||| Sbjct 19466536 TTTAAACGACATCGTTTTTT 19466555 Score = 37.4 bits (40), Expect = 7.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 688 ACATTTCTTCCACAACAGCA 707 |||||||||||||||||||| Sbjct 27731503 ACATTTCTTCCACAACAGCA 27731484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1257542882736 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2