BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1673 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr3S 266 6e-69 lcl|Jr6D 44.6 0.034 lcl|Jr7S 41.0 0.41 lcl|Jr2D 41.0 0.41 lcl|Jr1S 41.0 0.41 lcl|Jr1D 41.0 0.41 lcl|Jr8S 39.2 1.4 lcl|Jr6S 39.2 1.4 lcl|Jr5D 39.2 1.4 lcl|Jr4D 39.2 1.4 lcl|Jr8D 37.4 5.0 lcl|Jr7D 37.4 5.0 lcl|Jr5S 37.4 5.0 lcl|Jr4S 37.4 5.0 lcl|Jr3D 37.4 5.0 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 266 bits (294), Expect = 6e-69 Identities = 270/352 (77%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 499 AGGTGAATCCAGTGAAGTACAATAGCATTCCTTCCGGTTTCTCTACTCTCTTAAGAGAGC 558 |||||||||| | || || ||| ||||| |||| || || || || || | ||||| | Sbjct 23297545 AGGTGAATCCGATCAAATATAATGGCATTTCTTCAGGGTTTTCAACCCTTTGGAGAGAAC 23297486 Query 559 ATGGTCATTCTTATCTTTGGAGAGGTTGGTCAGGGAAGCTATTAGGCTATGGTGTTCAAG 618 | || | ||||| |||||||||||||||||||| |||||||| || ||||| |||||| Sbjct 23297485 AAGGCCCTTCTTCACTTTGGAGAGGTTGGTCAGGAAAGCTATTTGGATATGGCATTCAAG 23297426 Query 619 GTGGATGCAGATTTGGACTCTATGAGTACTTCAAGACACTCTACAGCGATGTGTTACCTA 678 | || |||| |||||| |||||||| ||||| |||| || ||| |||| || Sbjct 23297425 GCGGCTGCAAATTTGGTCTCTATGAATACTTTAAGAAGCTTTACTCTGATGCATTGGTAG 23297366 Query 679 ATCATAACAGAACTTCCATATATTTTCTCAGCAGTGCTTCTGCTCAAATATTCGCCGATA 738 ||| || ||| | || ||||| |||||||||||||| ||||||||| |||| || ||| Sbjct 23297365 ATCGTAGCAGGAGTTTCATATTCTTTCTCAGCAGTGCATCTGCTCAAGTATTTGCTGATG 23297306 Query 739 TGGCTTTATGTCCTTTTGAAGCCATAAAAGTTAGAGTTCAGACGCAGCCTATGTTTGCAA 798 ||||| | |||||||| ||||| | |||||| | ||||| |||||||| | ||||||| Sbjct 23297305 TGGCTCTCTGTCCTTTCGAAGCTGTGAAAGTTCGTGTTCAAACGCAGCCCAATTTTGCAA 23297246 Query 799 AAGGGTTGCTTGATGGATTTCCAAGAGTGTATAGAAGTGAAGGTCTTGCTGG 850 | || |||||||||| |||||| | | ||||||| ||||| || |||| Sbjct 23297245 AGGGCCTGCTTGATGGGGTTCCAAAATTATATAGAACCGAAGGACTCCCTGG 23297194 Score = 176 bits (194), Expect = 8e-42 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 889 TTCCATTTTCTATGGTGATGTTCTCAACGTTTGAGCAGTCAGTTGAGTTTATATATCAAA 948 || || | || ||| | ||||||||||| |||||||| || || || ||||||||||| Sbjct 23295420 TTGCAGTCTCCATGATAATGTTCTCAACATTTGAGCATTCCGTGGAATTTATATATCACG 23295361 Query 949 AGATTATCCAGAAAAGGAAGCAAGATTGCTCTAAAGCTCAACAACTCGGTGTCACATGTC 1008 | |||||||||| || ||| |||||||||| | ||| |||||||| ||||| |||||| Sbjct 23295360 ATATTATCCAGAGGAGAAAGGAAGATTGCTCAAGAGCCCAACAACTTGGTGTTACATGTT 23295301 Query 1009 TTGCTGGCTATACTGCTGGAGCCGTAGGTACAATCATCTCTAACCCCGCAGATGTGGTTC 1068 | ||||||||| | |||||| | || ||||| ||||||| ||||| || || || Sbjct 23295300 TAGCTGGCTATGCAGCTGGAACAGTTGGTACTGTCATCTCGAACCCAGCTGACAACATTA 23295241 Query 1069 TTTCGTCTCTCTACAACAACAAAGCCAAGAATGTGTTGCAGG 1110 |||| ||||| |||||||| | || | |||||| |||||| Sbjct 23295240 TTTCCTCTCTTTACAACAAACAGGCTGAAAATGTGATGCAGG 23295199 Score = 102 bits (112), Expect = 1e-19 Identities = 96/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 1107 CAGGCTGTGAGGAATATTGGGTTTGTTGGTCTATTCACCAGAAGCCTTCCTGTTCGGATC 1166 ||||| |||| ||| |||||| ||||| ||| || || ||||| |||||||||||||| Sbjct 23295116 CAGGCAGTGAAGAAAATTGGGCTTGTTAATCTTTTTACTAGAAGTCTTCCTGTTCGGATT 23295057 Query 1167 ACTATTGTTGGACCTGTCATTACTTTGCAATGGTTCTTTTATGATGCCATCAAAGT-CTT 1225 || | ||||| ||||| | ||||| || |||||||| ||||| |||| ||||| ||| Sbjct 23295056 ACACTCGTTGGCCCTGTTGTGACTTTACAGTGGTTCTTCTATGACACCATTAAAGTGCTT 23294997 Query 1226 A 1226 | Sbjct 23294996 A 23294996 Score = 80.6 bits (88), Expect = 5e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 429 GGAGGAATGCTTAGTGCCGGAACAACCCATTTGGCTATAACTCCTCTTGATGTCCTCAAA 488 ||||||||||||||||| || || |||||| | ||||| || || || |||||| | ||| Sbjct 23298829 GGAGGAATGCTTAGTGCTGGGACTACCCATCTTGCTATCACGCCCCTCGATGTCTTGAAA 23298770 Query 489 GTCAATATGCAGGT 502 || ||||||||||| Sbjct 23298769 GTGAATATGCAGGT 23298756 Score = 41.0 bits (44), Expect = 0.41 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 104 AAAGTAAAAGAGAGAGCCTTGTGTTTATTT 133 ||||||| ||||||||| ||||||||||| Sbjct 22286254 AAAGTAATAGAGAGAGCGGTGTGTTTATTT 22286283 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1296 GAAGAGTAGATCTATCTCTATCAACAATAA 1325 |||| || || |||||| |||||||||||| Sbjct 6155410 GAAGGGTTGAACTATCTTTATCAACAATAA 6155439 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 44.6 bits (48), Expect = 0.034 Identities = 47/62 (76%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 1104 TTGCAGGCTGTGAGGAATATTGGGTTTGTTGGTCTATTCACCAGAAGCCTTCCTGTTCGG 1163 ||||||||||||| ||| | ||||| ||||| || ||| | |||||||| |||| Sbjct 334851 TTGCAGGCTGTGAAAAATCTCGGGTTGTGGGGTCTTTTTACCCGTGGCCTTCCTCTTCGT 334910 Query 1164 AT 1165 || Sbjct 334911 AT 334912 Score = 41.0 bits (44), Expect = 0.41 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 468 ACTCCTCTTGATGTCCTCAAAGTCAATATGCAGGT 502 ||||||||||||||| |||| ||| |||||||| Sbjct 331363 ACTCCTCTTGATGTCGTCAAGTGCAACATGCAGGT 331397 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 16 AACCTAAATTGAAATTACCATTTTTTCT 43 ||| |||| | ||||||||||||||||| Sbjct 18715013 AACTTAAAGTAAAATTACCATTTTTTCT 18714986 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 41.0 bits (44), Expect = 0.41 Identities = 31/34 (91%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 22 AATTGAAATTACCATTTTTTCTCTTAA-AGATTC 54 |||||||||||| ||||||| |||||| |||||| Sbjct 9008227 AATTGAAATTACAATTTTTT-TCTTAACAGATTC 9008195 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 41.0 bits (44), Expect = 0.41 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 681 CATAACAGAACTTCCATATATTTTCTC 707 ||||| |||||||| |||||||||||| Sbjct 16438821 CATAAGAGAACTTCAATATATTTTCTC 16438795 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 73 TTCCCGAAAGCTTGGAACTTTATTT 97 ||||||||||||| ||||||| ||| Sbjct 24246150 TTCCCGAAAGCTTTGAACTTTCTTT 24246174 Score = 37.4 bits (40), Expect = 5.0 Identities = 37/45 (82%), Gaps = 5/45 (11%) Strand=Plus/Minus Query 1491 ATATTGCTGTAAACAGAAACA--ATG-ATCTTTAACTGATTGATG 1532 ||||| ||| |||||||| | ||| |||||||||||||| ||| Sbjct 32699590 ATATT--TGTTAACAGAAAAATTATGTATCTTTAACTGATTCATG 32699548 Score = 37.4 bits (40), Expect = 5.0 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 1554 TATCTTTGGTATGCTCTGAACAATTTTTGTAT 1585 ||||||||||||| | |||| || |||||||| Sbjct 36858351 TATCTTTGGTATGTTTTGAAGAA-TTTTGTAT 36858321 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 41.0 bits (44), Expect = 0.41 Identities = 32/38 (84%), Gaps = 3/38 (8%) Strand=Plus/Plus Query 80 AAGCTTGGAACTTTATTTGTTGAAAAAGTAAAAGAGAG 117 ||||||| || ||| ||||||||||||| ||||||| Sbjct 16496734 AAGCTTGAAAATTT---TGTTGAAAAAGTAGAAGAGAG 16496768 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 900 ATGGTGATGTTCTCAACGTTTGAGCA 925 ||||||||||||| ||||||| |||| Sbjct 19230604 ATGGTGATGTTCTTAACGTTTCAGCA 19230629 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 15 AAACCTAAATTGAAATTACCATTTTTTCTC 44 ||||| |||| |||| ||||||||||||| Sbjct 18900318 AAACCGAAATGCAAATCACCATTTTTTCTC 18900347 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 41.0 bits (44), Expect = 0.41 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 947 AAAGATTATCCAGAAAAGGAAGCAAGA 973 |||||||||||||||||| || ||||| Sbjct 11646643 AAAGATTATCCAGAAAAGAAAACAAGA 11646617 Score = 41.0 bits (44), Expect = 0.41 Identities = 36/44 (82%), Gaps = 1/44 (2%) Strand=Plus/Plus Query 1441 GTCTTGAACCCCT-GCCTGAAATTGGATTGTAAGTAAAGTGCTA 1483 ||| | ||||||| || ||||||||||| || | |||| ||||| Sbjct 34237525 GTCCTCAACCCCTAGCTTGAAATTGGATGGTGATTAAAATGCTA 34237568 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 338 TGAAACGATTTTTGGTAAGAAGATGA 363 |||||||||||||| |||||||||| Sbjct 21227931 TGAAACGATTTTTGAGAAGAAGATGA 21227906 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 399 TCTCCTTGGTTTTATACTGTTTGTA 423 |||||||||||||||| ||| |||| Sbjct 18088308 TCTCCTTGGTTTTATAATGTATGTA 18088284 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 24 TTGAAATTACCATTTTTTCTCTT 46 ||||||||||||| ||||||||| Sbjct 21218693 TTGAAATTACCATATTTTCTCTT 21218715 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 39.2 bits (42), Expect = 1.4 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 245 GTTTCTTCGTTT-CTGGGTTTTGGGTTTACT 274 |||||||||||| |||||||||||| || || Sbjct 11518090 GTTTCTTCGTTTTCTGGGTTTTGGGGTTTCT 11518120 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 524 CATTCCTTCCGGTTTCTCTACTC 546 |||||||||||||||| |||||| Sbjct 1145760 CATTCCTTCCGGTTTCCCTACTC 1145782 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 101 GAAAAAGTAAAAGAGAGAGCCTT 123 |||||||||||||||||| |||| Sbjct 16897819 GAAAAAGTAAAAGAGAGACCCTT 16897841 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 88 AACTTTATTTGTTGAAAAAGTAAAAGAGAG 117 |||| ||||| |||| ||||||||||||| Sbjct 16925228 AACTATATTTCTTGACTAAGTAAAAGAGAG 16925199 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 1.4 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 245 GTTTCTTCGTTT-CTGGGTTTTGGGTTTACT 274 |||||||||||| |||||||||||| || || Sbjct 13231325 GTTTCTTCGTTTTCTGGGTTTTGGGGTTTCT 13231355 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 246 TTTCTTCGTTTCTGGGTTTTGGGTTT 271 |||||| |||| |||||||||||||| Sbjct 23834801 TTTCTTGGTTTTTGGGTTTTGGGTTT 23834776 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 809 TGATGGATTTCCAAGAGTGTATA 831 |||||||||||||| |||||||| Sbjct 1535774 TGATGGATTTCCAACAGTGTATA 1535796 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.4 Identities = 30/33 (91%), Gaps = 2/33 (6%) Strand=Plus/Minus Query 22 AATTGAAATTACCATTTTTTCTCTTAA-AGATT 53 |||||||||||| ||||||| |||||| ||||| Sbjct 35539861 AATTGAAATTACAATTTTTT-TCTTAACAGATT 35539830 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1056 GCAGATGTGGTTCTTTCGTCTCTCT 1080 |||| ||||||||||| |||||||| Sbjct 29583733 GCAGGTGTGGTTCTTTAGTCTCTCT 29583757 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 809 TGATGGATTTCCAAGAGTGTATA 831 |||||||||||||| |||||||| Sbjct 33004947 TGATGGATTTCCAACAGTGTATA 33004969 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 809 TGATGGATTTCCAAGAGTGTATA 831 |||||||||||||| |||||||| Sbjct 16825050 TGATGGATTTCCAACAGTGTATA 16825072 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 5.0 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 24 TTGAAATTACCATTTTTTCTCTTAAAGATTCGATTTTT 61 |||||||||||| ||| | ||||||| || | ||||| Sbjct 11197333 TTGAAATTACCACTTTATATCTTAAAAATATGGTTTTT 11197370 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 5.0 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 92 TTATTTGTTGAAAAAGTAAA 111 |||||||||||||||||||| Sbjct 628002 TTATTTGTTGAAAAAGTAAA 628021 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 37.4 bits (40), Expect = 5.0 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 83 CTTGGAACTTTATTTGTTGAAAAAGTAAAAGAGA 116 || |||||||||||||||| ||| || |||||| Sbjct 33473516 CTAGGAACTTTATTTGTTG--AAACTAGAAGAGA 33473485 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1078 TCTACAACAACAAAGCCAAGAATGT 1102 ||| ||||||| ||||||||||||| Sbjct 33524585 TCTGCAACAACCAAGCCAAGAATGT 33524609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 877392802113 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2