BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1670 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr7D 206 5e-51 lcl|Jr5D 87.8 3e-15 lcl|Jr2S 71.6 2e-10 lcl|Jr8D 39.2 1.4 lcl|Jr6D 39.2 1.4 lcl|Jr5S 39.2 1.4 lcl|Jr3D 39.2 1.4 lcl|Jr2D 39.2 1.4 lcl|Jr1S 39.2 1.4 lcl|Jr8S 37.4 5.0 lcl|Jr4D 37.4 5.0 lcl|Jr3S 37.4 5.0 lcl|Jr1D 37.4 5.0 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 206 bits (228), Expect = 5e-51 Identities = 268/370 (72%), Gaps = 3/370 (1%) Strand=Plus/Plus Query 753 AGATGGTTTCCCCCAACAGAACGTTCTAGGGCGGTTGGTATTGCAATGGCAGGGTTTCAG 812 |||||||| || | ||||||||| | ||||| || || |||||||||| || |||||| Sbjct 7544596 AGATGGTTCCCTCAAACAGAACGAGCCAGGGCTGTCGGACTTGCAATGGCTGGTTTTCAG 7544655 Query 813 CTTGGGAATGTTGTAGGACTCATGTTGTCTCCTATTCTTATGTCTCAAGGAGGTATATAT 872 ||||| | || | ||||||||| | ||||| || || ||||| | || |||| || | Sbjct 7544656 CTTGGAAGTGCTATAGGACTCACACTTTCTCCCATCCTCATGTCACGCGGTGGTACATTT 7544715 Query 873 GGCCCATTTGTAATTTTTGGACTATCGGGGTTCCTTTGGTTGCTCGTGTGGCTCTCTGCA 932 || |||||||| || |||||| |||| || || || ||| | | || ||| | || ||| Sbjct 7544716 GGACCATTTGTTATATTTGGATTATCTGGATTTCTGTGGGTTTTGGTATGGATATCCGCA 7544775 Query 933 ACGTCAAGTGCACCAGATCGACATCCTCAGATTACAAAGTCTGAACTTGAGTATATAAAG 992 | |||||| | || || ||| |||||||||| |||| | |||| | ||||| ||| | Sbjct 7544776 ATATCAAGTACTCCTGACCGAAATCCTCAGATATCAAAATATGAATTGGAGTACATATTG 7544835 Query 993 CAAAAGAAGCAAATATC---TACTATGGAGAACAAACGAATTAGCACAAGTGGAATACCT 1049 | |||| ||||| ||| | | |||||||| | || | | |||| | || || Sbjct 7544836 GACAAGAGGCAAAAATCCTTTCCCATGGAGAATAGACCTAAGACAACAAAAGTGATCCCA 7544895 Query 1050 CCTTTTGGACGCCTTCTCTCCAAGATGCCGACTTGGGCTGTTATAGTTGCAAATTCCATG 1109 ||||| | ||| | || || || |||| || ||| | | || ||||||||| | ||| Sbjct 7544896 CCTTTCCGGCGCTTGCTTTCTAAACTGCCAACATGGTCCCTAATCGTTGCAAATGCTATG 7544955 Query 1110 CATAGCTGGG 1119 |||||||||| Sbjct 7544956 CATAGCTGGG 7544965 Score = 188 bits (208), Expect = 1e-45 Identities = 182/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 525 CAGTCATCGTTTCTATGGGGATACTTAATTTCTCCAATTGCTGGTGGAACTTTGGTGGAC 584 |||||||| || | ||||||||| | || || ||||| ||||| || | | ||||| Sbjct 7544226 CAGTCATCTTTCTTGTGGGGATACCTGATCTCGCCAATAGCTGGAGGGGCCCTAGTGGAT 7544285 Query 585 CGTTATGGTGGTAAAGTAGTCATGGCGTGGGGTGTGGCTTTGTGGTCGTTGGCAACTTTT 644 |||||| ||||| |||||||||| |||||||||||||||||||| | || || | Sbjct 7544286 TATTATGGCGGTAAGTTAGTCATGGCTTGGGGTGTGGCTTTGTGGTCACTAGCTACCTAC 7544345 Query 645 CTTACCCCTTGGGCGGCTGATAGTTCTTTGTGGGCTCTTCTTGC--TGCAAGAGCGATGG 702 ||||| || ||||| || || | |||||||||||| || ||||| ||| |||| || Sbjct 7544346 CTTACTCCCTGGGCTGCGGAGACTTCTTTGTGGGCCCTCCTTGCGATGC--GAGCTCTGC 7544403 Query 703 TTGGGGTTGCTGAAGGAGTGGCTCTTCCTTGTATGAACAACATGGTTGCGAG 754 |||| |||||||||||||| ||||||||||| |||||||| ||||| || || Sbjct 7544404 TTGGCGTTGCTGAAGGAGTAGCTCTTCCTTGCATGAACAATATGGTGGCCAG 7544455 Score = 145 bits (160), Expect = 1e-32 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 378 GAATTTATAACGTCGGAGAGAGTCAAAGTGGTTGCGATGCTCGCGCTTGCTTTGGCGCTA 437 || ||||| || |||||||| || |||||||| |||||||| || | ||| ||||||| Sbjct 7543440 GAGTTTATCACTTCGGAGAGGGTGAAAGTGGTGGCGATGCTGGCCTTGGCTCTGGCGCTT 7543499 Query 438 TGCAATGCGGATCGTGTTGTGATGTCCGTTGCGATTGTTCCTCTTTCGCTTTCTCGTGGA 497 ||||||||||| || ||||||||||| || ||||| |||||| | || || |||| ||| Sbjct 7543500 TGCAATGCGGACCGAGTTGTGATGTCGGTGGCGATCGTTCCTTTGTCTCTCTCTCACGGA 7543559 Query 498 TGGAGCAAATCATTTTCCGGTATCGTTCAG 527 |||||| ||| ||||| ||||| |||||| Sbjct 7543560 TGGAGCCGATCGTTTTCTGGTATTGTTCAG 7543589 Score = 138 bits (152), Expect = 2e-30 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 1165 TATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGG 1224 |||||| ||| |||||| |||||| || ||||||||||| ||||| ||||||||||||| Sbjct 7545580 TATATCGTGTTGACCTCAGACAAGCCGCATGGTTTAGTGCTGTTCCTTGGAGTATGATGG 7545639 Query 1225 CTTTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGTTGATACGGCGTGGTACAAGCA 1284 || ||| |||||| ||| |||||| |||||||| ||||||||| |||||| |||| Sbjct 7545640 CTATCATGGGATACTTTGGTGGTTTGTGGTCGGACATGTTGATACAAAGTGGTATAAGCG 7545699 Query 1285 TCACCTTAACGCGAAAAATCATGCAG 1310 |||| || || || || ||| | ||| Sbjct 7545700 TCACTTTGACTCGCAAGATCTTTCAG 7545725 Score = 120 bits (132), Expect = 5e-25 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1482 GGAATGTGTCTTACTGCTGGGACATTAGCTGCGATAGTTGGCACAGTTGGAGCTGGTTTC 1541 ||||||| ||| ||||| ||||| |||||||| || || |||||||||||||||||| Sbjct 7546981 GGAATGTCGAATACAGCTGGAACATTTGCTGCGATTGTCGGAACAGTTGGAGCTGGTTTC 7547040 Query 1542 TTTGTAGAACTATTGGGCTCCTTCCAGGGATTCATCCTTCTTACAGCAATATTGTATCTC 1601 ||||| || || |||| || ||||| |||||| | | |||||| || || | || | Sbjct 7547041 TTTGTTGAGCTGGTGGGTTCTTTCCAAGGATTCCTATTGCTTACATCACTACTATACTTT 7547100 Query 1602 CTTTCTGCTCTCTTTTACAACATATACGCAACTGGAGAAAGAGTAGATTTTGACACAACA 1661 ||| || | || || |||| | | | | |||||||| |||||| | ||||| |||| Sbjct 7547101 CTTGCTACCCTTTTCTACATCCTGTGTTCTACTGGAGAGAGAGTAAACTTTGATGAAACA 7547160 Query 1662 G 1662 | Sbjct 7547161 G 7547161 Score = 41.0 bits (44), Expect = 0.41 Identities = 34/42 (81%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 1118 GGGTTTCTTTGTGATTCTTTCATGGATGCCCATATACTTCAA 1159 ||| || || || |||||||| ||||||||||| || || || Sbjct 7545432 GGGCTTTTTCGTTATTCTTTCCTGGATGCCCATTTATTTTAA 7545473 Score = 37.4 bits (40), Expect = 5.0 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1149 ATATACTTCAATTCAGTATATCATGTGAACCTC 1181 ||||||||||||| ||||| |||| ||| ||| Sbjct 10151492 ATATACTTCAATTAAGTATTTCATAGGAATCTC 10151460 Score = 37.4 bits (40), Expect = 5.0 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1149 ATATACTTCAATTCAGTATATCATGTGAACCTC 1181 ||||||||||||| ||||| |||| ||| ||| Sbjct 10163373 ATATACTTCAATTAAGTATTTCATAGGAATCTC 10163341 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 87.8 bits (96), Expect = 3e-15 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 526 AGTCATCGTTTCTATGGGGATACTTAATTTCTCCAATTGCTGGTGGAACTTTGGTGGACC 585 ||||||| ||||| ||||||||| || |||| | | | || ||| | ||||| ||| Sbjct 31021638 AGTCATCATTTCTTTGGGGATACATATTTTCGTCGTTGGTCGGAGGAGCATTGGTAGACA 31021579 Query 586 GTTATGGTGGTAAAGTAGTCATGGCGTGGGGTGTGGCTTTGTGGTCGTTGGCAACTTTTC 645 | ||||| || || ||| || || ||||||||||||||||| ||||| || | | Sbjct 31021578 GGTATGGAGGGAAGAGAGTGATCGCAGCTGGTGTGGCTTTGTGGTCTTTGGCCACCCTCC 31021519 Query 646 TTACCCCTTGGGCGGC 661 | ||||||||||| || Sbjct 31021518 TCACCCCTTGGGCTGC 31021503 Score = 62.6 bits (68), Expect = 1e-07 Identities = 64/84 (76%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 1164 GTATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATG 1223 |||| | |||||||| | || ||||| || ||||||||||| ||||||||| | | ||| Sbjct 31020356 GTATTTAATGTGAACTTGAAGCAAGCAGCATGGTTTAGTGCTGTTCCATGGGGCACAATG 31020297 Query 1224 GCTTTCACAGGATACATTGCTGGT 1247 || | | || || ||||| ||| Sbjct 31020296 GCAATTTCTGGCTATATTGCAGGT 31020273 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 71.6 bits (78), Expect = 2e-10 Identities = 51/59 (86%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1165 TATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATG 1223 |||||||||| |||||| |||||| || |||||||||| ||||| |||||||||||| Sbjct 23339117 TATATCATGTTGACCTCAGACAAGCCGCATGGTTTAGTGTTGTTCCTTGGAGTATGATG 23339059 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 702 GTTGGGGTTGCTGAAGGAGTGGCTCT 727 ||||||||||||| ||| |||||||| Sbjct 7491770 GTTGGGGTTGCTGCAGGCGTGGCTCT 7491795 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1171 ATGTGAACCTCAAACAAGCTGCTTGGTTT 1199 ||||||||||||| |||| ||||||||| Sbjct 18369414 ATGTGAACCTCAACCAAGTGGCTTGGTTT 18369442 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1602 CTTTCTGCTCTCTTTTACAACATAT 1626 |||||||||||||| || ||||||| Sbjct 34743003 CTTTCTGCTCTCTTGTATAACATAT 34742979 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 702 GTTGGGGTTGCTGAAGGAGTGGCTCT 727 |||||||| |||| |||||||||||| Sbjct 32038665 GTTGGGGTGGCTGTAGGAGTGGCTCT 32038690 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1632 ACTGGAGAAAGAGTAGATTTTGACACAAC 1660 || |||||||||| || |||||||||||| Sbjct 30340877 ACAGGAGAAAGAGAAGCTTTTGACACAAC 30340905 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 85 TACAATCTTCAATTGACTTCCATAA 109 || ||||||| |||||||||||||| Sbjct 26773151 TAAAATCTTCTATTGACTTCCATAA 26773175 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 987 ATAAAGCAAAAGAAGCAAATATCTACTAT 1015 |||||||||||||||| || ||||| ||| Sbjct 27974886 ATAAAGCAAAAGAAGCCAACATCTATTAT 27974858 Score = 37.4 bits (40), Expect = 5.0 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1109 GCATAGCTGGGGTTTCTTTGTGATTCTTTC 1138 || |||||||||||||||| || ||||||| Sbjct 3836954 GCTTAGCTGGGGTTTCTTTTTG-TTCTTTC 3836982 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 787 TTGGTATTGCAATGGCAGGGTTTCAGCTTG 816 ||| ||||||||||| ||| ||||| |||| Sbjct 13147683 TTGTTATTGCAATGGAAGGCTTTCATCTTG 13147712 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1526 AGTTGGAGCTGGTTTCTTTGTAGAA 1550 |||||||| ||||||||||| |||| Sbjct 30298017 AGTTGGAGGTGGTTTCTTTGAAGAA 30298041 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1231 CAGGATACATTGCTGGTTTTTGGTCGGATT 1260 |||||| || ||| ||||||||||||||| Sbjct 38786764 CAGGATGCAGAGCTTGTTTTTGGTCGGATT 38786735 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1182 AAACAAGCTGCTTGGTTTAGTGCCGT 1207 |||||||||| |||||||||||| || Sbjct 2565786 AAACAAGCTGATTGGTTTAGTGCTGT 2565761 Score = 39.2 bits (42), Expect = 1.4 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 868 TATATGGCCCATTTGTAATTTTTG 891 |||| ||||||||||||||||||| Sbjct 9037981 TATAGGGCCCATTTGTAATTTTTG 9038004 Score = 39.2 bits (42), Expect = 1.4 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 1591 TATTGTATCTCCTTTCTGCTCTCTTTTACAACAT 1624 ||||| | |||||||||| ||||||||||| || Sbjct 14107704 TATTGCAAATCCTTTCTGCACTCTTTTACAAAAT 14107671 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 37.4 bits (40), Expect = 5.0 Identities = 34/42 (81%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 1167 TATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTT 1208 |||||||||||| || ||||| || ||| ||||| ||| || Sbjct 5010564 TATCATGTGAACATCGAACAAACTTCTT--TTTAGAGCCTTT 5010603 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 60 GTGAAAATGTGTTACTCTCTCTCTA 84 |||||||| |||| ||||||||||| Sbjct 15318712 GTGAAAATTTGTTGCTCTCTCTCTA 15318688 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1106 CATGCATAGCTGGGGTTTCTTTGTGATT 1133 ||| ||||||| |||||||||||| ||| Sbjct 10006564 CATCCATAGCTAGGGTTTCTTTGTTATT 10006591 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1420 GCCATTTGGGGTTTCTTATTAATCTTCAGG 1449 |||| | ||| |||||||||||| |||||| Sbjct 22275056 GCCACTGGGGTTTTCTTATTAATTTTCAGG 22275027 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1407 CTTAAATCATTCAGCCATTTGGGGTTT 1433 |||||||||||| ||| |||||||||| Sbjct 10539778 CTTAAATCATTCGGCC-TTTGGGGTTT 10539803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 875788793334 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2