BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1942 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr2S 187 5e-45 lcl|Jr7S 69.8 1e-09 lcl|Jr3S 69.8 1e-09 lcl|Jr4D 39.2 1.7 lcl|Jr8D 37.4 5.8 lcl|Jr7D 37.4 5.8 lcl|Jr6D 37.4 5.8 lcl|Jr5S 37.4 5.8 lcl|Jr5D 37.4 5.8 lcl|Jr4S 37.4 5.8 lcl|Jr3D 37.4 5.8 lcl|Jr2D 37.4 5.8 lcl|Jr1S 37.4 5.8 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 187 bits (206), Expect = 5e-45 Identities = 130/148 (88%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 448 AGGTGAACTTGAGTATTGCTATAATACCAATGTCACACCAGTTTGGATGGAGCTCATCTG 507 ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | Sbjct 34131441 AGGTGAACTTGAGTATTGCTATAATTCCAATGTCACACCAGTTTGGATGGAATTCATCAG 34131500 Query 508 TGGCTGGGTTGGTCCAGTCTTCCTTCTTTTGGGGTTATGCCTTGAGCCAGTTGCCTGGAG 567 |||| || ||||| ||||| || ||||||||||| ||||| ||||||||||||||||| | Sbjct 34131501 TGGCAGGATTGGTACAGTCATCATTCTTTTGGGGCTATGCATTGAGCCAGTTGCCTGGGG 34131560 Query 568 GTTGGCTTTCCAAGATTTTTGGCGGAAG 595 | |||||| | ||||| ||||| || || Sbjct 34131561 GGTGGCTTGCAAAGATATTTGGTGGGAG 34131588 Score = 118 bits (130), Expect = 2e-24 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1018 AGGAGATTCCATGGAAGTCATTTTTCCAAAGCCCGGCTGTTTGGGCAATGATATACACTC 1077 |||| | ||||||||| ||||||| ||||| | ||||| ||||| |||||||| |||| Sbjct 34136396 AGGAAGTACCATGGAAGGCATTTTTTCAAAGTCAAGCTGTATGGGCGATGATATATACTC 34136455 Query 1078 ACTTTTGTGGAAGTTGGGGTCACTATACCTGTTTATCTTGGCTACCAACTTATTTCAG 1135 | ||||| |||||||||||||||||||| ||| | || ||||| || || || ||||| Sbjct 34136456 ATTTTTGCGGAAGTTGGGGTCACTATACTTGTCTGTCGTGGCTTCCTACATACTTCAG 34136513 Score = 116 bits (128), Expect = 8e-24 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1268 GGTCCGAAAGATTTGTCAAACGATTGCGTTTGTGGCACCAGCGATCTGCATGACACTTTC 1327 ||| || |||||||| ||| | ||||| ||| |||| || || || |||||||| || || Sbjct 34139692 GGTACGGAAGATTTGCCAATCAATTGCCTTTCTGGCGCCTGCAATTTGCATGACTCTGTC 34139751 Query 1328 ATCTGTGGACATTGGATTGCCACCATGGGAAATTGTAGGAATTTTGACAGCAGGCTTGGC 1387 ||| |||| | ||||||||||| |||||||| || |||||| | || ||||| || Sbjct 34139752 ATCCCTGGATCTAGGATTGCCACCTTGGGAAATGGTGGGAATTCTCACTAGTGGCTTAGC 34139811 Query 1388 CCTATCAAGTTTTGCTTTATCAGG 1411 ||||||||| ||||| | ||||| Sbjct 34139812 CCTATCAAGCTTTGCCCTGTCAGG 34139835 Score = 89.7 bits (98), Expect = 1e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 594 AGAAAAGTGCTTGAGATTGGTGTCTTTACATGGTCTTTCGCTACAGCTCTTGTTCCACTA 653 |||||||| ||| || |||| || || |||||||| | |||||||| |||||||| | Sbjct 34132733 AGAAAAGTTCTTAAGTTTGGGGTATTGACATGGTCAGTGGCTACAGCGCTTGTTCCTATG 34132792 Query 654 CTTGCTGGATTTATGCCCGGTTTGATCTTTTCTCGAATTTTGGT 697 ||||||||||| | ||||| || ||||| || |||| ||||| Sbjct 34132793 CTTGCTGGATTATTACCCGGATTAATCTTGTCAAGAATATTGGT 34132836 Score = 84.2 bits (92), Expect = 4e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1463 GGGTATTACAAACACAGTCGGGGCAGTACCTGGAATTGTAGGAGTGGCCCTAACTGGTTT 1522 ||||||||| ||||| || |||||||||||||| || ||||| || ||||| ||||||| Sbjct 34140788 GGGTATTACCAACACTGTTGGGGCAGTACCTGGTATCGTAGGGGTAGCCCTTACTGGTTA 34140847 Query 1523 TCTCCTAGACTCGACCCATTCCTGGA 1548 || || || || || ||||| |||| Sbjct 34140848 CCTTCTTGATTCAACTCATTCGTGGA 34140873 Score = 84.2 bits (92), Expect = 4e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1551 ATGTCTCTATTCGTGCCATCAATATTCTTCTACTTGACGGGGACGGTTGTATGGTTGGCA 1610 ||||| |||| | |||||||| |||||||||||||| || ||||||||||||||| Sbjct 34140981 ATGTCATTATTTGCACCATCAATCTTCTTCTACTTGACCGGTACGGTTGTATGGTTGATG 34141040 Query 1611 TTTGCAAGCAGTGAGCCTCAGACGTT 1636 || || |||||| ||||||| || || Sbjct 34141041 TTCGCCAGCAGTAAGCCTCAAACCTT 34141066 Score = 80.6 bits (88), Expect = 5e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1172 GGTTTCCATCCTTCCTCCACTGGCTTCGATTGTCGTGACAAGTCTTGCTTCACAATTTGC 1231 |||||| ||||||||||||||||||||||| | || ||||| |||| |||||||||| Sbjct 34139188 GGTTTCTATCCTTCCTCCACTGGCTTCGATCTTTGTTACAAGCATTGCGGCACAATTTGC 34139247 Query 1232 TGATTACTTAATTACAAATGGAGTTGA 1258 ||| | || ||| | | |||||| || Sbjct 34139248 TGACCATTTGATTGCGAGTGGAGTGGA 34139274 Score = 73.4 bits (80), Expect = 8e-11 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 354 TTTGAACAGAATTGGCCTCCATGGAAAAATATACCTCAGAGATATAAGCTTATCGGCGCT 413 ||||| ||| | || |||||||| ||||| ||| | || |||||||| ||||| | Sbjct 34130924 TTTGATTGGAAATCGCTGCCATGGAAGAATATTCCTGATAGGTATAAGCTCATCGGGACG 34130983 Query 414 ACTTCTCTCGCCTTTGTTATCTGCAATATGGACAAGGT 451 || || | ||||| ||||| ||||||||||| ||||| Sbjct 34130984 ACGTCGTTGGCCTTCGTTATTTGCAATATGGATAAGGT 34131021 Score = 71.6 bits (78), Expect = 3e-10 Identities = 66/84 (79%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 823 GGCTTCTCTTGGCTCCTCCCATCATCGAAACCTTTAATTGGGAATCTGTCTTTTACTTGT 882 ||||||| || ||||||||| | ||| | | ||| |||||||||||| |||||| ||| Sbjct 34135007 GGCTTCTTTTTGCTCCTCCCCTTATCCAGAATTTTGGTTGGGAATCTGTTTTTTACATGT 34135066 Query 883 TTGGTCTCCTTGGTGTTGGCTGGT 906 |||| | ||||| ||| ||||| Sbjct 34135067 TTGGCATTCTTGGGCTTGCCTGGT 34135090 Score = 51.8 bits (56), Expect = 3e-04 Identities = 57/74 (77%), Gaps = 4/74 (5%) Strand=Plus/Plus Query 746 CAGGACAATACC--TGTTAAGGAGCGCTCAAGAGCGGTAGGCTTTGTTTTTGGAGGACTG 803 |||| ||||||| ||| | ||||| ||| | || |||| ||||||||||| || ||| Sbjct 34134125 CAGGTCAATACCATTGTCA--GAGCGGTCACGGGCTGTAGCATTTGTTTTTGGTGGTCTG 34134182 Query 804 AGTTTGGGGAGTGT 817 ||| | || ||||| Sbjct 34134183 AGTGTTGGAAGTGT 34134196 Score = 37.4 bits (40), Expect = 5.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1894 AGGaaaaaggaaaaaaTAACATTTTACA 1921 |||||||| |||||| ||||||||||| Sbjct 10712237 AGGAAAAAAAAAAAAAAAACATTTTACA 10712210 Score = 37.4 bits (40), Expect = 5.8 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 458 GAGTATTGCTATAATACCAATG-TCACACC 486 |||||||| ||||||||||||| |||||| Sbjct 29954679 GAGTATTGGTATAATACCAATGAGCACACC 29954708 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 69.8 bits (76), Expect = 1e-09 Identities = 59/73 (81%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 823 GGCTTCTCTTGGCTCCTCCCATCATCGAAACCTTTAATTGGGAATCTGTCTTTTACTTGT 882 ||||||| |||||||||||| | ||| | | ||| |||||||||||| |||||| ||| Sbjct 18685339 GGCTTCTTTTGGCTCCTCCCCTTATCCAGAATTTTGGTTGGGAATCTGTTTTTTACATGT 18685398 Query 883 TTGGTCTCCTTGG 895 |||| | ||||| Sbjct 18685399 TTGGCATTCTTGG 18685411 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 69.8 bits (76), Expect = 1e-09 Identities = 59/73 (81%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 823 GGCTTCTCTTGGCTCCTCCCATCATCGAAACCTTTAATTGGGAATCTGTCTTTTACTTGT 882 ||||||| |||||||||||| | ||| | | ||| |||||||||||| |||||| ||| Sbjct 14489609 GGCTTCTTTTGGCTCCTCCCCTTATCCAGAATTTTGGTTGGGAATCTGTTTTTTACATGT 14489668 Query 883 TTGGTCTCCTTGG 895 |||| | ||||| Sbjct 14489669 TTGGCATTCTTGG 14489681 Score = 51.8 bits (56), Expect = 3e-04 Identities = 57/74 (77%), Gaps = 4/74 (5%) Strand=Plus/Plus Query 746 CAGGACAATACC--TGTTAAGGAGCGCTCAAGAGCGGTAGGCTTTGTTTTTGGAGGACTG 803 |||| ||||||| ||| | ||||| ||| | || |||| ||||||||||| || ||| Sbjct 14488725 CAGGTCAATACCATTGTCA--GAGCGGTCACGGGCTGTAGCATTTGTTTTTGGTGGTCTG 14488782 Query 804 AGTTTGGGGAGTGT 817 ||| | || ||||| Sbjct 14488783 AGTGTTGGAAGTGT 14488796 Score = 41.0 bits (44), Expect = 0.48 Identities = 34/42 (81%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 1656 GTTTTGTTATTGAGGCACAAAAACATGGAGAAACTTTTGTTA 1697 ||||||||||| ||| | | |||| |||||| |||||||| Sbjct 24170826 GTTTTGTTATTCAGGAAGAGCAACAGAGAGAAATTTTTGTTA 24170867 Score = 37.4 bits (40), Expect = 5.8 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 129 AATCACTTCTTCTCATCTC-CTATCTA 154 ||||| ||||||||||||| ||||||| Sbjct 15517482 AATCATTTCTTCTCATCTCACTATCTA 15517456 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.7 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1073 CACTCACTTTTGTGGAAGTTGGGGTCACTAT 1103 ||||||||||||||||| ||| ||| | ||| Sbjct 35874791 CACTCACTTTTGTGGAATTTGAGGTTAGTAT 35874821 Score = 37.4 bits (40), Expect = 5.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1591 GGACGGTTGTATGGTTGGCATTTGCAAGCA 1620 ||| |||| | ||||||||||||| ||||| Sbjct 33984132 GGATGGTTATGTGGTTGGCATTTGGAAGCA 33984103 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 5.8 Identities = 30/34 (88%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 1661 GTTATTGAGGCACAAAAACATGGAGA-AACTTTT 1693 ||||||||||||||||| ||||| | ||||||| Sbjct 22598740 GTTATTGAGGCACAAAA--ATGGATATAACTTTT 22598771 Score = 37.4 bits (40), Expect = 5.8 Identities = 30/34 (88%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 1661 GTTATTGAGGCACAAAAACATGGAGA-AACTTTT 1693 ||||||||||||||||| ||||| | ||||||| Sbjct 22672223 GTTATTGAGGCACAAAA--ATGGATATAACTTTT 22672254 Score = 37.4 bits (40), Expect = 5.8 Identities = 30/34 (88%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 1661 GTTATTGAGGCACAAAAACATGGAGA-AACTTTT 1693 ||||||||||||||||| ||||| | ||||||| Sbjct 22707095 GTTATTGAGGCACAAAA--ATGGATATAACTTTT 22707126 Score = 37.4 bits (40), Expect = 5.8 Identities = 30/34 (88%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 1661 GTTATTGAGGCACAAAAACATGGAGA-AACTTTT 1693 ||||||||||||||||| ||||| | ||||||| Sbjct 22782997 GTTATTGAGGCACAAAA--ATGGATATAACTTTT 22783028 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 5.8 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1896 GaaaaaggaaaaaaTAACATTTTACAGGTG 1925 ||||||||| ||| ||| |||||||||||| Sbjct 15387065 GAAAAAGGAGAAA-TAAGATTTTACAGGTG 15387093 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 37.4 bits (40), Expect = 5.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 778 CGGTAGGCTTTGTTTTTGGAGGACTGAGTT 807 ||||||| ||| |||||||||||||| || Sbjct 2776246 CGGTAGGTTTTTCTTTTGGAGGACTGATTT 2776275 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 5.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1660 TGTTATTGAGGCACAAAAACATGGAGAA 1687 ||||||| | ||| |||||||||||||| Sbjct 3889222 TGTTATTTATGCAAAAAAACATGGAGAA 3889249 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 37.4 bits (40), Expect = 5.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 858 AATTGGGAATCTGTCTTTTACTTGTTTG 885 |||||||||| | ||||||||||| ||| Sbjct 944938 AATTGGGAATTTCTCTTTTACTTGCTTG 944965 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 5.8 Identities = 30/36 (83%), Gaps = 3/36 (8%) Strand=Plus/Plus Query 863 GGAATCTGTCTTTTACTTGTTTGGTCTCCTTGGTGT 898 ||||||| |||| ||||||||||| ||||| ||| Sbjct 2903881 GGAATCT---TTTTCCTTGTTTGGTCCCCTTGTTGT 2903913 Score = 37.4 bits (40), Expect = 5.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 451 TGAACTTGAGTATTGCTATAATACC 475 |||||||||||||||||| | |||| Sbjct 5591541 TGAACTTGAGTATTGCTACACTACC 5591517 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 37.4 bits (40), Expect = 5.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 858 AATTGGGAATCTGTCTTTTACTTGTTTG 885 |||||||||| | ||||||||||| ||| Sbjct 2924872 AATTGGGAATTTCTCTTTTACTTGCTTG 2924899 Score = 37.4 bits (40), Expect = 5.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1020 GAGATTCCATGGAAGTCATTTTTCCAAAGC 1049 |||||||||||||| ||||||| ||||| Sbjct 3742665 GAGATTCCATGGAAAGAATTTTTCAAAAGC 3742694 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 37.4 bits (40), Expect = 5.8 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 806 TTTGGGGAGTGTAATG-GGGCTTCT 829 |||||||||||||||| |||||||| Sbjct 14438064 TTTGGGGAGTGTAATGTGGGCTTCT 14438040 Score = 37.4 bits (40), Expect = 5.8 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 781 TAGGCTTTGTTTTTGGAGGA 800 |||||||||||||||||||| Sbjct 40828099 TAGGCTTTGTTTTTGGAGGA 40828080 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 5.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 858 AATTGGGAATCTGTCTTTTACTTGTTTG 885 |||||||||| | ||||||||||| ||| Sbjct 4337059 AATTGGGAATTTCTCTTTTACTTGCTTG 4337032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1021218922630 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2