BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=2502 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr6S 313 7e-83 lcl|Jr6D 313 7e-83 lcl|Jr1D 260 4e-67 lcl|Jr8D 41.0 0.62 lcl|Jr5D 41.0 0.62 lcl|Jr3S 41.0 0.62 lcl|Jr2S 41.0 0.62 lcl|Jr5S 39.2 2.2 lcl|Jr4D 39.2 2.2 lcl|Jr3D 39.2 2.2 lcl|Jr2D 39.2 2.2 lcl|Jr1S 39.2 2.2 lcl|JrScfU0007 37.4 7.5 lcl|JrScfU0006 37.4 7.5 lcl|Jr7S 37.4 7.5 lcl|Jr7D 37.4 7.5 lcl|Jr4S 37.4 7.5 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 313 bits (346), Expect = 7e-83 Identities = 362/482 (75%), Gaps = 17/482 (4%) Strand=Plus/Plus Query 886 TTCCTCTTCAGGATCCTGTAGTGGATTCGATTA-AGAATGCAGTGGACAGGCTAACACAT 944 || |||| ||||||||||| || || || || | || | || |||||||| | || || Sbjct 21250697 TTTCTCTACAGGATCCTGTCGTTGACTCAATAAGAGCA-GCCGTGGACAGATTGACTCAC 21250755 Query 945 TCAACAAACTTTCTTAATTTCATGGCTCAACATGCTTTAATCATGCAAGACGATGAAGAC 1004 |||||||| || || || || |||| ||||||||| | || |||||||| || | | | Sbjct 21250756 TCAACAAATTTCCTCAACTTTTTGGCGCAACATGCTCTCATTATGCAAGATGA-GCTG-C 21250813 Query 1005 CTACTAATGCTTCCTCCAGACGAGCAAGCGGAAAAAGAAGAAGGAAGATATCACTTCATG 1064 ||||| || || || |||| || | | ||| ||| || || || Sbjct 21250814 CTACT-------CCCATTGAGGAACAAGTTGATGATCA-----GAA-ATACCATTTTATA 21250860 Query 1065 TCACTATTGTTAAACTTGGCCAACACGTTTCTTTATATGGTCAATACATATATCATTGTT 1124 ||||| | || |||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 21250861 TCACTTCTCTTGAACTTGGCCAACACATTTCTTTATATGGTCAATACATATATTGTTGTT 21250920 Query 1125 CCAACAGCTGATGATTACTCTATGAGCCTTGGAGCAGCCGCAACGGTTTGTGGTGTTGTT 1184 || ||||| ||||| ||||| ||||||||||||| || ||||| ||||||||| |||| Sbjct 21250921 CCTACAGCAGATGACTACTCCTTGAGCCTTGGAGCTGCAGCAACAGTTTGTGGTATTGTG 21250980 Query 1185 ATCGGTGCTATGGCCGTTGCTCAGCTCTTCTCTTCCGTTTACTTCAGTGCTTGGTCCAAT 1244 || ||||| ||||| ||||| ||| | || ||||| || || || ||||| ||||| ||| Sbjct 21250981 ATTGGTGCAATGGCAGTTGCCCAGGTGTTTTCTTCGGTGTATTTTAGTGCATGGTCAAAT 21251040 Query 1245 AAATCTTACTTCAAGCCGCTTATATTTAGTAGCATCGTTCTTTTCTTTGGGAACTTGTTA 1304 ||||| |||||| | || ||| ||||||| || || | |||| | | || ||| || Sbjct 21251041 AAATCATACTTCCAACCTCTTGTATTTAGCAGTATAGCTCTTCTTGTGGGAAACACCTTG 21251100 Query 1305 TATGCTTTGGCTTATGACTTTAATTCATTAGCACTTCTCTTGATTGGTCGGCTTTTTTGT 1364 ||||| ||||||||||| ||||||| |||| ||||| | ||||| || ||||| ||| Sbjct 21251101 TATGCATTGGCTTATGATCTTAATTCGATAGCGGTTCTCCTAATTGGCCGCCTTTTCTGT 21251160 Query 1365 GG 1366 || Sbjct 21251161 GG 21251162 Score = 262 bits (290), Expect = 1e-67 Identities = 220/270 (81%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 1361 TTGTGGATTTGGTTCAGCGAGAGCAGTGAACCGGAGATATATAAGCGATTGTGTGCCGCT 1420 |||| |||| ||||| || ||||| || |||||||| ||||| || |||||||| || || Sbjct 21252080 TTGTAGATTGGGTTCTGCAAGAGCTGTTAACCGGAGGTATATCAGTGATTGTGTACCTCT 21252139 Query 1421 GAAAATCCGAATGCAGGCTTCAGCGGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCTTG 1480 ||||||||| |||||||| ||||| | |||||||||||| |||||||| |||||||| || Sbjct 21252140 GAAAATCCGCATGCAGGCATCAGCAGCTTTTGTTAGTGCCAGTGCTCTTGGAATGGCCTG 21252199 Query 1481 TGGTCCTGCTCTTGCTGGCTTGTTGCAAACTGATTTCAAGATCAAAAATGTTACATTTAA 1540 |||||||||||| ||||| ||| | |||||| |||| | |||| | || ||||||| || Sbjct 21252200 TGGTCCTGCTCTAGCTGGTTTGCTTCAAACTAATTTTAGGATCTACAAGCTTACATTCAA 21252259 Query 1541 CCAAGATACGTTACCTGGTTGGGTTATGGCTGTTGCTTGGCTATTGTACTTAGTCTGGTT 1600 ||||| || || ||||| |||||||||||||||||||||||| | |||||| | ||||| Sbjct 21252260 TCAAGACACCTTGCCTGGCTGGGTTATGGCTGTTGCTTGGCTAATATACTTAATTTGGTT 21252319 Query 1601 AGCTATTTCGTTTCGGGAACCTGCACGTGA 1630 ||| || ||| |||||| | | ||| Sbjct 21252320 GTGTATCTCATTTAAAGAACCTTCTCATGA 21252349 Score = 239 bits (264), Expect = 1e-60 Identities = 243/317 (77%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 476 TCAGATCGAGAAAATCGCTCTTTTCATGTTGGAGCAACAAGGTTTGCTTTCAAGTAGGTT 535 |||||| ||||| || | ||||| ||||||| |||||||| | || |||| ||||| Sbjct 21250026 TCAGATTGAGAAGATTGTCCTTTTTCTGTTGGAACAACAAGGGATACTAGCAAGCAGGTT 21250085 Query 536 ACAAAAGCTAAGGGAATGGCATGATACACTTCAAGATGAGCCTGACTTATCTCAGATAGC 595 | ||||| ||| ||||||| | ||||| | | ||||| | ||||| ||| | Sbjct 21250086 AGCTAAGCTTGATGAACAGCATGATTCCCTTCAGCAGCAACCTGATATGTCTCAAATATC 21250145 Query 596 TAAGCTAAGAGAGGCTTATAGAGCCGTGGGACAAGATCTTCTCAAGCTTCTGTTTTTCAT 655 | | || |||| ||||||||||| ||||||| ||||||| | |||||||| ||||| | Sbjct 21250146 TGAATTACGAGAAGCTTATAGAGCAGTGGGACGAGATCTTTTAAAGCTTCTCTTTTTTGT 21250205 Query 656 CGATATGAATGCTATTGGTATCCGCAAGATACTGAAGAAATTCGATAAGAGATTCGGTTA 715 || || || ||||||||| | || |||||||||||||| || ||||| | |||||||| Sbjct 21250206 TGAGATAAACGCTATTGGTCTGCGGAAGATACTGAAGAAGTTTGATAAACGCTTCGGTTA 21250265 Query 716 TCGATTCACAAACTATTATGTCAAGACTCGCGCTGATCATCCTTACTCTCAACTTCAGCA 775 | ||||||| || ||||| ||||| || || || ||||||||||||| || || ||||| Sbjct 21250266 TAGATTCACTAATTATTACGTCAAAACACGTGCAAATCATCCTTACTCCCAGCTGCAGCA 21250325 Query 776 AGTGTTTAGACATGTGG 792 |||||| | ||||||| Sbjct 21250326 AGTGTTCAAGCATGTGG 21250342 Score = 149 bits (164), Expect = 2e-33 Identities = 149/191 (78%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1864 AGGTTCAATTGTTGATATACTTCATGCTTAAGTATGCAATGGAGATTCTACTATCAGAAT 1923 ||||||| ||||||||||| |||||||| || |||| |||||||||| |||| ||||||| Sbjct 21253644 AGGTTCAGTTGTTGATATATTTCATGCTCAAATATGTAATGGAGATTTTACTTTCAGAAT 21253703 Query 1924 CAAGTGTTGTAACCACATATTACTTTGGTTGGTCCATGAGTTCTGTTTCCA-TCTTCTTG 1982 |||||||| | |||||||| |||||| ||||| | ||| | || | | | |||||| Sbjct 21253704 CAAGTGTTATTACCACATACTACTTTCACTGGTCTACGAGCACAGTGGCAATTTTTCTTG 21253763 Query 1983 TTCTGTCTGGGTCTAACCGTTTTACCGGTTAACCTCGTTGTTGGAAGCTATATCAGCAAC 2042 | | || || || || ||| | || || ||| |||||||||||| || || ||||| Sbjct 21253764 CT-TCCCTTGGCCTGACAGTTCTTCCAGTAAACATCGTTGTTGGAAATTACATTAGCAAT 21253822 Query 2043 ATGTTCGAAGA 2053 ||||| ||||| Sbjct 21253823 ATGTTTGAAGA 21253833 Score = 111 bits (122), Expect = 4e-22 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 2056 GGCAAATTCTGTTAGCGTCAGAGATTATGGTCTGTATCGGAATAGTTCTCAGCTTCCATG 2115 |||| ||||| || ||||| || ||| |||| || || || ||| | || ||||||||| Sbjct 21254046 GGCAGATTCTATTGGCGTCTGAAATTGTGGTTTGCATAGGCATACTCCTGAGCTTCCATA 21254105 Query 2116 TAGTAATCCCTTACACTGTCCCACAATACGTTATCTCAGGATTTATCATGTTTGTTTCTG 2175 || ||| || ||| |||| ||||| || || ||||||| | ||| |||||||||||| Sbjct 21254106 TAATAAATCCGTACTCTGTGCCACAGTATGTCTGCTCAGGACTCATCGTGTTTGTTTCTG 21254165 Query 2176 CTGAAGTTCTTGAAGGTGTGA 2196 | || || |||||||||| || Sbjct 21254166 CCGAGGTACTTGAAGGTGAGA 21254186 Score = 109 bits (120), Expect = 1e-21 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 360 TATTACATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGGTCCACAAATCGAA 419 |||||||| || || ||| | |||||||| | ||| || ||||||| || |||||| ||| Sbjct 21249122 TATTACATTAACTATAAACTCATGAAGAAAAGAGTAAAACAATATGTTCAACAAATTGAA 21249181 Query 420 GTAGGAAGTTTAGATCGCCGCCATGTTCTTAAAGATTTCTCAAGGATGTTGGATCATCAG 479 || || | | |||||| || ||||| || || ||||||||||| ||||||||| ||||| Sbjct 21249182 GTTGGGACTCAAGATCGACGGCATGTACTCAAGGATTTCTCAAGAATGTTGGATAATCAG 21249241 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 798 GGAGCTGTTGTTGGAGCCATATCTCGCAACCTTCATGAGCTTCAAAACAATGAAGGAAGC 857 || |||||||| ||||| |||| || || |||||||| ||||| || | |||||| Sbjct 21250451 GGGGCTGTTGTGGGAGCTGTATCGCGAAATCTTCATGAACTTCAGAATCGGCAGGGAAGC 21250510 Query 858 TACTTATCCATTTATGACCAGCCTGTTCTTCCTCTTCAGGATCCTGT 904 |||||||| || ||||| || |||| |||||| || |||| | |||| Sbjct 21250511 TACTTATCGATATATGATCAACCTGCTCTTCCCCTCCAGGTTTCTGT 21250557 Score = 46.4 bits (50), Expect = 0.015 Identities = 47/60 (78%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 299 AGAGAAA-ATGGTCGCCTTTGGAAAAAAGCTCAAGGAACGTAGCATTGAAGAATGGCAAG 357 || |||| ||||| |||||||| |||| | | |||||| | ||| |||||||||||| Sbjct 21247351 AGTGAAAGATGGTTGCCTTTGGGAAAAGGTTGAAGGAAAGACAAATTCAAGAATGGCAAG 21247410 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 1296 AACTTGTTATATGCTTTGGCTTATGACTTTAATT 1329 || || || ||||||| |||||||||||||||| Sbjct 1304588 AAGTTATTTTATGCTT--GCTTATGACTTTAATT 1304557 Score = 37.4 bits (40), Expect = 7.5 Identities = 33/40 (83%), Gaps = 1/40 (3%) Strand=Plus/Minus Query 2462 AAGCTAACTCCTAGGTTCCATTGTTTCTCTTTTCTTTTGG 2501 ||||||| || ||||||| || ||| | ||||||||||| Sbjct 13911649 AAGCTAA-TCGTAGGTTCTATAATTTTTTTTTTCTTTTGG 13911611 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 313 bits (346), Expect = 7e-83 Identities = 359/481 (75%), Gaps = 15/481 (3%) Strand=Plus/Plus Query 886 TTCCTCTTCAGGATCCTGTAGTGGATTCGATTAAGAATGCAGTGGACAGGCTAACACATT 945 ||| ||| ||||||||||| | ||||| || || || ||||| ||| |||| || | Sbjct 31969247 TTCATCTGCAGGATCCTGTCATTGATTCAATAAAAGCAGCTGTGGATAGGTTAACCCACT 31969306 Query 946 CAACAAACTTTCTTAATTTCATGGCTCAACATGCTTTAATCATGCAAGACGATGAAGACC 1005 ||||||| || || || || |||| |||||||| | || ||||||||||| | || Sbjct 31969307 CAACAAATTTCCTCAACTTTTTGGCGCAACATGCACTCATTATGCAAGACGAGCTA--CC 31969364 Query 1006 TACTAATGCTTCCTCCAGACGAGCAAGCGGAAAAAGAAGAAGGAAGATATCACTTCATGT 1065 |||| || | || ||||||| || | | ||| ||| || || |||| Sbjct 31969365 TACTCCTGTT-------GAGGAGCAAGTTGATGATCA-----GAA-ATACCATTTTATGT 31969411 Query 1066 CACTATTGTTAAACTTGGCCAACACGTTTCTTTATATGGTCAATACATATATCATTGTTC 1125 | || | || ||||||| ||||| ||||||||||||||||||||||||||| |||| | Sbjct 31969412 CGCTTCTCTTGAACTTGGTGAACACATTTCTTTATATGGTCAATACATATATCGTTGTCC 31969471 Query 1126 CAACAGCTGATGATTACTCTATGAGCCTTGGAGCAGCCGCAACGGTTTGTGGTGTTGTTA 1185 | ||||| ||||| ||||| ||||||||||||| || || || ||||||||| |||| | Sbjct 31969472 CTACAGCAGATGACTACTCCTTGAGCCTTGGAGCTGCAGCGACAGTTTGTGGTATTGTGA 31969531 Query 1186 TCGGTGCTATGGCCGTTGCTCAGCTCTTCTCTTCCGTTTACTTCAGTGCTTGGTCCAATA 1245 | || || ||||| ||||| || |||| ||||| || || || ||||| ||||| |||| Sbjct 31969532 TTGGGGCAATGGCTGTTGCACAAGTCTTTTCTTCGGTGTATTTTAGTGCATGGTCAAATA 31969591 Query 1246 AATCTTACTTCAAGCCGCTTATATTTAGTAGCATCGTTCTTTTCTTTGGGAACTTGTTAT 1305 |||| |||||||| || ||||||||||| || | |||||||| | || ||| | || | Sbjct 31969592 AATCATACTTCAAACCTCTTATATTTAGCAGTGTAGTTCTTTTTGTGGGAAACATCTTGT 31969651 Query 1306 ATGCTTTGGCTTATGACTTTAATTCATTAGCACTTCTCTTGATTGGTCGGCTTTTTTGTG 1365 | || ||||||||||| || |||| |||| |||| | ||||| || ||||| |||| Sbjct 31969652 ACGCGTTGGCTTATGATCTTGATTCGATAGCGGTTCTTCTAATTGGGCGTCTTTTCTGTG 31969711 Query 1366 G 1366 | Sbjct 31969712 G 31969712 Score = 257 bits (284), Expect = 4e-66 Identities = 235/297 (79%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 1366 GATTTGGTTCAGCGAGAGCAGTGAACCGGAGATATATAAGCGATTGTGTGCCGCTGAAAA 1425 || ||||||| || ||||| || |||||||| ||||| || |||||||| || || |||| Sbjct 31970253 GACTTGGTTCTGCCAGAGCTGTCAACCGGAGGTATATTAGTGATTGTGTACCACTAAAAA 31970312 Query 1426 TCCGAATGCAGGCTTCAGCGGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCTTGTGGTC 1485 |||||||||||| || || |||||||||||||| |||||||| |||||||||||||||| Sbjct 31970313 CCCGAATGCAGGCGTCGGCAGGTTTTGTTAGTGCCAGTGCTCTTGGAATGGCTTGTGGTC 31970372 Query 1486 CTGCTCTTGCTGGCTTGTTGCAAACTGATTTCAAGATCAAAAATGTTACATTTAACCAAG 1545 |||| || ||||| ||| | |||||| ||||||||||| | || |||| || || ||| Sbjct 31970373 CTGCCCTGGCTGGTTTGCTTCAAACTAATTTCAAGATCTACAAGCTTACTTTCAATCAAA 31970432 Query 1546 ATACGTTACCTGGTTGGGTTATGGCTGTTGCTTGGCTATTGTACTTAGTCTGGTTAGCTA 1605 | || | ||||| ||||||||||||||| |||||||| | |||||| | ||||| | | Sbjct 31970433 ACACCCTGCCTGGCTGGGTTATGGCTGTTACTTGGCTAATATACTTAATTTGGTTGGGGA 31970492 Query 1606 TTTCGTTTCGGGAACCTGCACGTGAGCCAGAAGAGATTCATACTTCACAAGAGTCTA 1662 | || ||| |||||| | ||||| | ||||| | |||| |||| || |||| Sbjct 31970493 TCTCATTTAAAGAACCTTCTCGTGAAACTGAAGAAAATCATTTACCACAGGAATCTA 31970549 Score = 206 bits (228), Expect = 7e-51 Identities = 236/317 (74%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 476 TCAGATCGAGAAAATCGCTCTTTTCATGTTGGAGCAACAAGGTTTGCTTTCAAGTAGGTT 535 |||||||||||| || | ||||| ||||||| || ||||| | ||| |||| ||| | Sbjct 31968553 TCAGATCGAGAAGATTGTCCTTTTTCTGTTGGAACAGCAAGGGCTACTTGCAAGCAGGCT 31968612 Query 536 ACAAAAGCTAAGGGAATGGCATGATACACTTCAAGATGAGCCTGACTTATCTCAGATAGC 595 | | ||| ||| || |||| | ||| | ||||||| |||| || ||| | Sbjct 31968613 AGCTATGCTTGCTGAACACAATAATACCCCTCAGCAGCAGCCTGAAATATCCCAAATATC 31968672 Query 596 TAAGCTAAGAGAGGCTTATAGAGCCGTGGGACAAGATCTTCTCAAGCTTCTGTTTTTCAT 655 | ||||||| ||||||||||| |||||||| |||| | |||||||| ||||| | Sbjct 31968673 GGAATTAAGAGAAGCTTATAGAGCAGTGGGACAGCATCTGTTAAAGCTTCTCTTTTTTGT 31968732 Query 656 CGATATGAATGCTATTGGTATCCGCAAGATACTGAAGAAATTCGATAAGAGATTCGGTTA 715 || || |||||||||||| | || |||||||||||||| || ||||| | || ||||| Sbjct 31968733 TGAGATAAATGCTATTGGTCTGCGGAAGATACTGAAGAAGTTTGATAAACGTTTTGGTTA 31968792 Query 716 TCGATTCACAAACTATTATGTCAAGACTCGCGCTGATCATCCTTACTCTCAACTTCAGCA 775 |||| || || | ||||||||| || || || |||||||||| ||||| || ||||| Sbjct 31968793 CAGATTGACTAATTCTTATGTCAAAACACGTGCAAATCATCCTTATTCTCAGCTGCAGCA 31968852 Query 776 AGTGTTTAGACATGTGG 792 |||||| | ||||||| Sbjct 31968853 AGTGTTCAAGCATGTGG 31968869 Score = 125 bits (138), Expect = 2e-26 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1864 AGGTTCAATTGTTGATATACTTCATGCTTAAGTATGCAATGGAGATTCTACTATCAGAAT 1923 ||||||| |||||||||| |||||||| || || | ||||||||| || | ||||||| Sbjct 31972238 AGGTTCAGCTGTTGATATATTTCATGCTCAAATACGTGATGGAGATTTTAATTTCAGAAT 31972297 Query 1924 CAAGTGTTGTAACCACATATTACTTTGGTTGGTCCATGAGTTCTGTTTCCA-TCTTCTTG 1982 |||||||||| |||||||| |||||| ||||| | || ||| | | | |||||| Sbjct 31972298 CAAGTGTTGTTACCACATACTACTTTCAGTGGTCTACAAGCAGTGTGGCGATTTTTCTTG 31972357 Query 1983 TTCTGTCTGGGTCTAACCGTTTTACCGGTTAACCTCGTTGTTGGAAGCTATATCAGCAAC 2042 | | ||| || || || ||| | || ||||| | ||| | |||| ||| || ||||| Sbjct 31972358 CT-TCTCTTGGCCTCACGGTTCTTCCAGTTAATATTGTTATAGGAAACTACATTAGCAAT 31972416 Query 2043 ATGTTCGAAGA 2053 ||||| ||||| Sbjct 31972417 ATGTTTGAAGA 31972427 Score = 116 bits (128), Expect = 1e-23 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 2217 GTGATGTCATCGAGGCTGTCCCGCGGGACTTATAACGGAGGGTTACTGTCGACGGAAGCT 2276 || ||||| || |||| ||||| || || | |||||| || |||| || || ||||| Sbjct 31973214 GTCATGTCGTCCCGGCTATCCCGTGGAACCTTTAACGGTGGACTACTCTCAACAGAAGCA 31973273 Query 2277 GGCACGATTGCACGTGTGATAGCGGATGCGACGATCACTTTGGCTGGTTTCTTGGGACAG 2336 || || || ||||| ||| | || |||| ||||| || |||||||| | |||||| || Sbjct 31973274 GGGACAATCGCACGAGTGGTGGCAGATGGCACGATAACATTGGCTGGGTACTTGGGGGAG 31973333 Query 2337 AGTATGCTTTTGAATGTTACTCTGCTTCCTTCTTTGATCATCTGTGTTTTGTCTATCCTA 2396 |||| || |||||||| || ||||||||||| | |||| || | | || ||| | Sbjct 31973334 AGTAAACTGTTGAATGTCACCCTGCTTCCTTCACTCTTCATTTGCATATCCTCCATCTTT 31973393 Query 2397 GCTACTTGTTATACTTATAACTCCTTGTATTA 2428 || || || | || || ||||| | ||||| Sbjct 31973394 GCCACCTGCTTCACCTACAACTCTCTCTATTA 31973425 Score = 104 bits (114), Expect = 6e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 798 GGAGCTGTTGTTGGAGCCATATCTCGCAACCTTCATGAGCTTCAAAACAATGAAGGAAGC 857 |||||||| || ||||||||||| ||||| |||||||| ||||| || | ||||||| Sbjct 31968998 GGAGCTGTCGTGGGAGCCATATCACGCAATCTTCATGAACTTCAGGACCGTCAAGGAAGT 31969057 Query 858 TACTTATCCATTTATGACCAGCCTGTTCTTCCTCTTCAGGATCCTGT 904 |||||||| || ||||| || |||| |||||| || |||| | |||| Sbjct 31969058 TACTTATCAATATATGATCAACCTGCTCTTCCCCTCCAGGTTTCTGT 31969104 Score = 102 bits (112), Expect = 2e-19 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 2056 GGCAAATTCTGTTAGCGTCAGAGATTATGGTCTGTATCGGAATAGTTCTCAGCTTCCATG 2115 |||||||| | || || || || ||||| || || | || || | || ||||||||| Sbjct 31972808 GGCAAATTTTATTGGCATCTGAAATTATAGTTTGCGTAGGCGTACTCCTGAGCTTCCATA 31972867 Query 2116 TAGTAATCCCTTACACTGTCCCACAATACGTTATCTCAGGATTTATCATGTTTGTTTCTG 2175 | |||| || ||| |||| ||||| ||||| ||| ||| | ||| |||||||||||| Sbjct 31972868 TTATAATTCCATACTCTGTGCCACAGTACGTCTGCTCTGGACTCATCCTGTTTGTTTCTG 31972927 Query 2176 CTGAAGTTCTTGAAGGTGTGA 2196 | ||||| |||||||||| || Sbjct 31972928 CCGAAGTACTTGAAGGTGAGA 31972948 Score = 46.4 bits (50), Expect = 0.015 Identities = 47/60 (78%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 299 AGAGAAA-ATGGTCGCCTTTGGAAAAAAGCTCAAGGAACGTAGCATTGAAGAATGGCAAG 357 || |||| ||||| ||||| || |||||| | |||||| | ||| |||||||||||| Sbjct 31966089 AGTGAAAGATGGTTGCCTTCGGGAAAAAGTTGAAGGAAAGACAGATTCAAGAATGGCAAG 31966148 Score = 42.8 bits (46), Expect = 0.18 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2476 GTTCCATTGTTTCTCTTTTCTTT 2498 ||||||||||||||||||||||| Sbjct 14572472 GTTCCATTGTTTCTCTTTTCTTT 14572494 Score = 39.2 bits (42), Expect = 2.2 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 1916 ATCAGAATCAAGTGTTGTAACCACATATTAC 1946 |||||||| ||| |||| ||||||||||||| Sbjct 4106252 ATCAGAATTAAG-GTTGCAACCACATATTAC 4106223 Score = 39.2 bits (42), Expect = 2.2 Identities = 40/51 (78%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 315 TTTGGAAAAAAGCTCA-AGGAACGTAGCATTGAAGAATGGCAAGAATATTA 364 |||| || ||| | || | | | |||||| || |||| ||||||||||||| Sbjct 4973894 TTTGCAATAAACCCCATAAGCAAGTAGCACTGTAGAAGGGCAAGAATATTA 4973844 Score = 37.4 bits (40), Expect = 7.5 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 157 CATGaaa-aaaaTGATGAGTTTTTCAGTAATCTTTCGAA 194 ||| ||| ||||||||||| |||||| ||| ||||||| Sbjct 136232 CATAAAATAAAATGATGAG-TTTTCATAAATATTTCGAA 136195 Score = 37.4 bits (40), Expect = 7.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2366 TTCTTTGATCATCTGTGTTTTGT 2388 || |||||||||||||||||||| Sbjct 13339446 TTTTTTGATCATCTGTGTTTTGT 13339468 Score = 37.4 bits (40), Expect = 7.5 Identities = 33/40 (83%), Gaps = 1/40 (3%) Strand=Plus/Plus Query 2462 AAGCTAACTCCTAGGTTCCATTGTTTCTCTTTTCTTTTGG 2501 ||||||| | ||||||| || ||| ||||||||||||| Sbjct 20683441 AAGCTAATTG-TAGGTTCTATAATTTTTCTTTTCTTTTGG 20683479 Score = 37.4 bits (40), Expect = 7.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1919 AGAATCAAGTGTTGTAACCACATAT 1943 |||||||| ||||||||||| |||| Sbjct 28635462 AGAATCAAATGTTGTAACCAAATAT 28635486 Score = 37.4 bits (40), Expect = 7.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1307 TGCTTTGGC-TTATGACTTTAATTCATTAGCA 1337 |||| |||| || || |||||||||||||||| Sbjct 33236181 TGCTCTGGCGTTGTGGCTTTAATTCATTAGCA 33236212 Score = 37.4 bits (40), Expect = 7.5 Identities = 41/53 (77%), Gaps = 5/53 (9%) Strand=Plus/Plus Query 1667 TGAGCAA--ATCTTTTGTG---GTGAAGCTGATCAAGATGGAAATATAGAGAA 1714 ||||||| || ||||||| ||||| || || |||||||||||||||| Sbjct 36854230 TGAGCAATTATTTTTTGTGTACGTGAATTCAATTAAAATGGAAATATAGAGAA 36854282 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 260 bits (288), Expect = 4e-67 Identities = 248/317 (78%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 1050 AGATATCACTTCATGTCACTATTGTTAAACTTGGCCAACACGTTTCTTTATATGGTCAAT 1109 |||||||| || |||||||| | | ||||||| ||||| ||||| ||||||||||| Sbjct 47182073 AGATATCATTTTATGTCACTTCTCCTGAACTTGGTAAACACATTTCTATATATGGTCAAC 47182132 Query 1110 ACATATATCATTGTTCCAACAGCTGATGATTACTCTATGAGCCTTGGAGCAGCCGCAACG 1169 ||||| ||||| ||||| ||||| || ||||| ||||||||||||| || ||||| Sbjct 47182133 ACATACATCATAGTTCCGACAGCAGACAGCTACTCCTTGAGCCTTGGAGCTGCAGCAACA 47182192 Query 1170 GTTTGTGGTGTTGTTATCGGTGCTATGGCCGTTGCTCAGCTCTTCTCTTCCGTTTACTTC 1229 || ||||| ||||| || || ||||||| ||||||||| | || ||||| ||||| || Sbjct 47182193 GTCTGTGGAGTTGTGATAGGGTCTATGGCTGTTGCTCAGGTGTTTTCTTCAGTTTATTTT 47182252 Query 1230 AGTGCTTGGTCCAATAAATCTTACTTCAAGCCGCTTATATTTAGTAGCATCGTTCTTTTC 1289 ||||| ||||| |||| ||| ||||||| ||| ||| |||||||||| | || ||| | Sbjct 47182253 AGTGCATGGTCAAATAGATCGTACTTCAGGCCCCTTGTATTTAGTAGTGTTGTCCTTCTT 47182312 Query 1290 TTTGGGAACTTGTTATATGCTTTGGCTTATGACTTTAATTCATTAGCACTTCTCTTGATT 1349 | || ||| ||||||||| |||||||||| | |||||| || | |||| ||||| Sbjct 47182313 GTGGGAAACACCTTATATGCTCTGGCTTATGATCTGAATTCAATATCTGTTCTTCTGATT 47182372 Query 1350 GGTCGGCTTTTTTGTGG 1366 |||||||| || ||||| Sbjct 47182373 GGTCGGCTCTTCTGTGG 47182389 Score = 129 bits (142), Expect = 2e-27 Identities = 226/328 (69%), Gaps = 1/328 (0%) Strand=Plus/Plus Query 465 ATGTTGGATCATCAGATCGAGAAAATCGCTCTTTTCATGTTGGAGCAACAAGGTTTGCTT 524 || ||| |||| |||||||| | || | |||||| || | || |||||||| ||| Sbjct 47180904 ATCTTGAATCA-CAGATCGAAAGGATTGTCCTTTTCCTGCTAGAACAACAAGGGCAACTT 47180962 Query 525 TCAAGTAGGTTACAAAAGCTAAGGGAATGGCATGATACACTTCAAGATGAGCCTGACTTA 584 | | |||||| | || || || ||| || | ||| | | |||| || | Sbjct 47180963 GCTACCAGGTTATCTGACCTTAGAGAGCAGCAGCATGCTCTTTTACAGCAGCCAGATGGA 47181022 Query 585 TCTCAGATAGCTAAGCTAAGAGAGGCTTATAGAGCCGTGGGACAAGATCTTCTCAAGCTT 644 || ||| || | || || || |||||||| || ||| |||||| | | ||| Sbjct 47181023 TCAAGAATATCTGAATTACAGGAAGCATATAGAGCAGTTGGATGTGATCTTTTAAGACTT 47181082 Query 645 CTGTTTTTCATCGATATGAATGCTATTGGTATCCGCAAGATACTGAAGAAATTCGATAAG 704 || | ||| | || || ||||| |||||| | || |||||| |||| ||||| |||||| Sbjct 47181083 CTCTCTTTTGTTGAGATCAATGCCATTGGTTTACGTAAGATATTGAAAAAATTTGATAAG 47181142 Query 705 AGATTCGGTTATCGATTCACAAACTATTATGTCAAGACTCGCGCTGATCATCCTTACTCT 764 | || |||||| ||||| ||||| |||||||| ||||| || | ||||||||||| Sbjct 47181143 CGGTTTGGTTATAAGTTCACCAACTACTATGTCAAAACTCGTGCAAACCATCCTTACTCC 47181202 Query 765 CAACTTCAGCAAGTGTTTAGACATGTGG 792 || || | ||||| || | ||||||| Sbjct 47181203 CAGCTGCGACAAGTTTTCAAGCATGTGG 47181230 Score = 107 bits (118), Expect = 5e-21 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1864 AGGTTCAATTGTTGATATACTTCATGCTTAAGTATGCAATGGAGATTCTACTATCAGAAT 1923 |||||||| | || | || || ||||| || ||||| ||||||||| |||| | |||| Sbjct 47184380 AGGTTCAACTATTTGTGTATTTTATGCTCAAATATGCCATGGAGATTTTACTTGCTGAAT 47184439 Query 1924 CAAGTGTTGTAACCACATATTACTTTGGTTGGTCCATGAGTTCTGTTTCCATC-TTCTTG 1982 ||||||| | || |||||| ||| |||| | | || ||| | ||| |||||| Sbjct 47184440 CAAGTGTCATCACTGGATATTATTTTATTTGGACAAGCAGCAGTGTGGCAATCTTTCTTG 47184499 Query 1983 TTCTGTCTGGGTCTAACCGTTTTACCGGTTAACCTCGTTGTTGGAAGCTATATCAGCAAC 2042 ||||| || ||||| || | || || ||| | ||||||||| ||||||| ||||| Sbjct 47184500 -CATGTCTCGGGCTAACAGTGCTTCCAGTAAACATTATTGTTGGAAACTATATCGGCAAC 47184558 Query 2043 ATGTTCGAAGA 2053 ||||| ||||| Sbjct 47184559 ATGTTTGAAGA 47184569 Score = 105 bits (116), Expect = 2e-20 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 2189 AGGTGTGAACTTATCGTTACTATCGAGAGTGATGTCATCGAGGCTGTCCCGCGGGACTTA 2248 ||||||||||||||| | ||||| | || |||||||| ||||| ||||| || || || Sbjct 47185708 AGGTGTGAACTTATCACTCCTATCTCGTGTCATGTCATCAAGGCTTTCCCGTGGCACGTA 47185767 Query 2249 TAACGGAGGGTTACTGTCGACGGAAGCTGGCACGATTGCACGTGTGATAGCGGATGCGAC 2308 || || || | || || || ||||| || || | || || || || || |||| || Sbjct 47185768 CAATGGTGGACTGCTTTCCACAGAAGCCGGGACCCTGGCTCGAGTTATTGCAGATGGTAC 47185827 Query 2309 GATCACTTTGGCTGGTTTCTTGGGACAGAGTATGCTTTTGAATGTTACTCTGCTTCCTTC 2368 || || || |||||| ||||| |||||| || |||||| | || | |||| | Sbjct 47185828 AATAACACTGTCTGGTTATTTGGGTGAGAGTAGACTCTTGAATATCACCTTAGCTCCTGC 47185887 Query 2369 TTTGATCATCTGTGTTTTGTCTATCCTAGCTACTTGTTATACTTATAACTC 2419 | |||||||| ||| || ||| | ||||| || | || || ||||| Sbjct 47185888 ACTCCTCATCTGTATTTCATCCATCATTGCTACCTGCTTCACCTACAACTC 47185938 Score = 64.4 bits (70), Expect = 5e-08 Identities = 71/96 (74%), Gaps = 9/96 (9%) Strand=Plus/Plus Query 796 TTGGAGCTGTTGTTGGAGCCATATCTCGCA---------ACCTTCATGAGCTTCAAAACA 846 |||| ||||| ||||||||||||||||||| | ||||| || |||||| || Sbjct 47181417 TTGGTGCTGTCGTTGGAGCCATATCTCGCAATCTCGCAGATCTTCAAGACCTTCAACACC 47181476 Query 847 ATGAAGGAAGCTACTTATCCATTTATGACCAGCCTG 882 || | || | |||| |||| || ||||| || |||| Sbjct 47181477 ATCAGGGGAACTACATATCGATATATGATCATCCTG 47181512 Score = 62.6 bits (68), Expect = 2e-07 Identities = 52/64 (81%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 363 TACATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGGTCCACAAATCGAAGTA 422 ||||||||||||||||| |||||||||||||| || | ||| | |||||| || || Sbjct 47180341 TACATCAATTACAAATTAATGAAGAAGAAAGTTAATCGATACACACAACAAATTGAGGTC 47180400 Query 423 GGAA 426 |||| Sbjct 47180401 GGAA 47180404 Score = 41.0 bits (44), Expect = 0.62 Identities = 40/52 (77%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 306 ATGGTCGCCTTTGGAAAAAAGCTCAAGGAACGTAGCATTGAAGAATGGCAAG 357 ||||| ||||||||||| ||||| | ||| ||| |||||||||||| Sbjct 47179320 ATGGTGGCCTTTGGAAAGAAGCTGAGAGAATCACAAATTAAAGAATGGCAAG 47179371 Score = 37.4 bits (40), Expect = 7.5 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 271 AAAAATACGAAGAAG-AACGAGAACAACAAGAGAAAA 306 || ||| | ||||| ||||||||||| ||||||||| Sbjct 29846726 AACAATCCAAAGAATCAACGAGAACAAAAAGAGAAAA 29846762 Score = 37.4 bits (40), Expect = 7.5 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Plus Query 450 AAAGATTTCTCAAG-GATGTTGGATCATCAGATCGAGAAAAT 490 ||||||| ||||| |||| ||||||||||||| | |||| Sbjct 30402699 AAAGATTCTTCAAGAGATGAAGGATCATCAGATCCACCAAAT 30402740 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 271 AAAAATACGAAGAAGAACGAGAACAACAAGAGAAA 305 ||||| ||||||||||| |||| || |||| ||| Sbjct 39709070 AAAAAAACGAAGAAGAAGAAGAAGAAGAAGAAAAA 39709036 Score = 37.4 bits (40), Expect = 7.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1697 AGATGGAAATATAGAGAAAG 1716 |||||||||||||||||||| Sbjct 50939363 AGATGGAAATATAGAGAAAG 50939344 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 41.0 bits (44), Expect = 0.62 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 367 TCAATTACAAATTGATGAAGAAGAAAG 393 ||||||||||| ||| ||||||||||| Sbjct 11527100 TCAATTACAAAGTGAGGAAGAAGAAAG 11527074 Score = 39.2 bits (42), Expect = 2.2 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 1269 TTTAGTAGCATCGTTCTTTTCTTT 1292 |||||||||||| ||||||||||| Sbjct 7268490 TTTAGTAGCATCTTTCTTTTCTTT 7268513 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/34 (85%), Gaps = 3/34 (9%) Strand=Plus/Minus Query 1092 TTTCTTTATATGGTCAAT---ACATATATCATTG 1122 |||||||||||||| || ||||||||||||| Sbjct 19951645 TTTCTTTATATGGTTTATATAACATATATCATTG 19951612 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 41.0 bits (44), Expect = 0.62 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 1745 GGAAGAAACAGAACATGATGAAGAAGA 1771 |||||||| |||| ||||||||||||| Sbjct 25690664 GGAAGAAAAAGAAAATGATGAAGAAGA 25690690 Score = 37.4 bits (40), Expect = 7.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1033 CGGAAAAAGAAGAAGGAAGATAT 1055 || |||||||||||||||||||| Sbjct 8864946 CGAAAAAAGAAGAAGGAAGATAT 8864968 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 1296 AACTTGTTATATGCTTTGGCTTATGACTTTAATT 1329 || || || ||||||| |||||||||||||||| Sbjct 22330573 AAGTTATTTTATGCTT--GCTTATGACTTTAATT 22330604 Score = 37.4 bits (40), Expect = 7.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1696 AAGATGGAAATATAGAGAAA 1715 |||||||||||||||||||| Sbjct 23653182 AAGATGGAAATATAGAGAAA 23653163 Score = 37.4 bits (40), Expect = 7.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1764 GAAGAAGATGACGGTGATGGAAGCGAGG 1791 || || ||||||| |||||||||||||| Sbjct 26546229 GATGACGATGACGATGATGGAAGCGAGG 26546256 Score = 37.4 bits (40), Expect = 7.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 89 TCTCTTTCTCTCTGGGCTTT 108 |||||||||||||||||||| Sbjct 31531290 TCTCTTTCTCTCTGGGCTTT 31531309 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 41.0 bits (44), Expect = 0.62 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Minus Query 1746 GAAGAAACAGAACATGATGAAGAAGATGACGGTGATG 1782 |||||| |||| || ||||||||||||| ||| ||| Sbjct 3403552 GAAGAAGAAGAAGATAATGAAGAAGATGAAGGTAATG 3403516 Score = 37.4 bits (40), Expect = 7.5 Identities = 37/47 (79%), Gaps = 1/47 (2%) Strand=Plus/Minus Query 144 ttttttttCTGTGCATGaaaaaaaTGATGAGTTTTTCAGTAATCTTT 190 || ||||| ||| || | ||||||||||| ||||||| |||||| Sbjct 2392457 TTATTTTTGTGTACAGGCTCAAAATGATGAG-TTTTCAGCGATCTTT 2392412 Score = 37.4 bits (40), Expect = 7.5 Identities = 35/43 (81%), Gaps = 4/43 (9%) Strand=Plus/Minus Query 1730 GCTGTTGCTTGCATCGGAAGAAACAGAACATGATGAAGAAGAT 1772 |||| |||| ||| ||||||||||| ||||||||||| || Sbjct 3791340 GCTGATGCT-GCAGAGGAAGAAACAG---ATGATGAAGAAAAT 3791302 Score = 37.4 bits (40), Expect = 7.5 Identities = 35/45 (78%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 816 ATATCTCGCAACCTTCATGAGCTTCAAAACAATGAAGGAAGCTAC 860 ||||| | |||| |||| | | |||| ||||||||||||| || Sbjct 13248644 ATATCACACAACAATCATAACATGCAAATCAATGAAGGAAGCCAC 13248600 Score = 37.4 bits (40), Expect = 7.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 198 GAATTTGAATTCTTTGAAGATTGTG 222 ||||||| ||||||||||||| ||| Sbjct 24661334 GAATTTGTATTCTTTGAAGATGGTG 24661358 Score = 37.4 bits (40), Expect = 7.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 203 TGAATTCTTTGAAGATTGTGACATTTA 229 ||||||| ||||||||||||| ||||| Sbjct 25206227 TGAATTCATTGAAGATTGTGA-ATTTA 25206202 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 41.0 bits (44), Expect = 0.62 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 1097 TTATATGGTCAATACATATATCATTGTTCCAA 1128 ||||||||||||| |||||||||| ||||| Sbjct 366020 TTATATGGTCAATGGATATATCATTTATCCAA 365989 Score = 41.0 bits (44), Expect = 0.62 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Minus Query 1746 GAAGAAACAGAACATGATGAAGAAGATGACGGTGATG 1782 |||||| |||| | || ||||||||||||| ||||| Sbjct 9966596 GAAGAAGAAGAAGAAGAAGAAGAAGATGACGATGATG 9966560 Score = 41.0 bits (44), Expect = 0.62 Identities = 32/38 (84%), Gaps = 4/38 (11%) Strand=Plus/Minus Query 2 ttttttttttCTTGGTGAAAATAGGGTTAAGAGAAAAC 39 |||||||||| ||||||||||||| || ||||||| Sbjct 27628755 TTTTTTTTTTTTTGGTGAAAATAG----AAAAGAAAAC 27628722 Score = 39.2 bits (42), Expect = 2.2 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 73 AGAGAAAATCTGGGGCTCTCTTTCTCTCT 101 ||||||||| ||| |||||||||||||| Sbjct 5038865 AGAGAAAATACGGGTCTCTCTTTCTCTCT 5038837 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1747 AAGAAACAGAACATGATGAAGAAGATGACGGTGAT 1781 |||||| |||| | || ||||||||||| | |||| Sbjct 7825083 AAGAAAAAGAAGAAGAAGAAGAAGATGATGATGAT 7825117 Score = 37.4 bits (40), Expect = 7.5 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 157 CATGaaaaaaaTGATGAGTTTTTCAGTAATCTTTCGAAG 195 ||| ||||||| ||||||||||||| || |||| |||| Sbjct 8834223 CATTAAAAAAA-GATGAGTTTTTCA-TATTCTTATGAAG 8834187 Score = 37.4 bits (40), Expect = 7.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1745 GGAAGAAACAGAACATGATGAAGAAGATGACGGTGATG 1782 |||||| ||| ||||||||||||| || ||||||| Sbjct 8924478 GGAAGAGGAAGAGGATGATGAAGAAGAAGATGGTGATG 8924515 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1677 TTTTGTGGTGAAGCTGATCAAGATGGAAAT 1706 |||||||||| || ||| ||||||||||| Sbjct 11539025 TTTTGTGGTGGAGATGAAGAAGATGGAAAT 11539054 Score = 37.4 bits (40), Expect = 7.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1696 AAGATGGAAATATAGAGAAA 1715 |||||||||||||||||||| Sbjct 20532461 AAGATGGAAATATAGAGAAA 20532480 Score = 37.4 bits (40), Expect = 7.5 Identities = 28/33 (85%), Gaps = 4/33 (12%) Strand=Plus/Minus Query 250 AAAGCTGAATCTAAATTC----ACCAAAAATAC 278 ||||||||||||| |||| ||||||||||| Sbjct 24204904 AAAGCTGAATCTAGATTCCAAAACCAAAAATAC 24204872 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1480 GTGGTCCTGCTCTTGCTGGCTTGTTGCAAA 1509 ||||||||||||||| |||||| ||||| Sbjct 28452632 GTGGTCCTGCTCTTGGATGCTTGTGGCAAA 28452661 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 39.2 bits (42), Expect = 2.2 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 1295 GAACTTGTTATATGCTTTGGCTTATGACTTTAATT 1329 ||| || || ||||||| |||||||||||||||| Sbjct 11980423 GAAATTATTTTATGCTT--GCTTATGACTTTAATT 11980391 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 2.2 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 1967 TGTTTCCATCTTCTTGTTCTGTCTGGGTCTA 1997 |||||| ||||||||||||||| ||||| || Sbjct 1540326 TGTTTC-ATCTTCTTGTTCTGTTTGGGTTTA 1540355 Score = 39.2 bits (42), Expect = 2.2 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 2166 TTTGTTTCTGCTGAAGTTCTT-GAAGGT 2192 ||||||||| ||||||||||| |||||| Sbjct 35183379 TTTGTTTCTTCTGAAGTTCTTGGAAGGT 35183352 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 1296 AACTTGTTATATGCTTTGGCTTATGACTTTAATT 1329 || || || ||||||| |||||||||||||||| Sbjct 14882709 AAGTTATTTTATGCTT--GCTTATGACTTTAATT 14882678 Score = 37.4 bits (40), Expect = 7.5 Identities = 37/47 (79%), Gaps = 2/47 (4%) Strand=Plus/Minus Query 133 AGTCTCTTGAtttttttttCTGTGCATGaaaaaaaTGATGAGTTTTT 179 ||| |||| ||||||||| || || |||| ||||||||||||| Sbjct 26424989 AGTTTCTTTTTTTTTTTTTTGATGGAT--AAAACATGATGAGTTTTT 26424945 Score = 37.4 bits (40), Expect = 7.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 669 ATTGGTATCCGCAAGATACTGAAGAAAT 696 |||||| || |||| ||||||||||||| Sbjct 28469576 ATTGGTCTCTGCAACATACTGAAGAAAT 28469603 Score = 37.4 bits (40), Expect = 7.5 Identities = 37/48 (77%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 1746 GAAGAAACAGAACATGATGAAGAAGATGACGGTGATGGAAGCGAGGAA 1793 |||||| |||| ||||||||||||| || | |||| | |||||| Sbjct 33364059 GAAGAAGAAGAAGATGATGAAGAAGAAGAAGAAGATGAAGAAGAGGAA 33364106 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 269 CCAAAAATACGAAGAAGAACGAGAACAACA 298 ||||||| ||||||||||| |||| |||| Sbjct 35751880 CCAAAAAGACGAAGAAGAAAAAGAAAAACA 35751909 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 39.2 bits (42), Expect = 2.2 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 1522 TCAAAAATGTTAC-ATTTAACCAAGATA 1548 ||||||| ||||| |||||||||||||| Sbjct 18206388 TCAAAAAAGTTACCATTTAACCAAGATA 18206361 Score = 37.4 bits (40), Expect = 7.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 271 AAAAATACGAAGAAGAACGAGAACAACAAGAGAAAATG 308 ||||| | ||||||||| |||| | ||||||||||| Sbjct 21312940 AAAAAGAAGAAGAAGAAGAAGAAGAGGAAGAGAAAATG 21312903 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 2.2 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 269 CCAAAAATACGAAGAAGAACGAGAACAACAAGAG 302 |||||| | ||| |||||| ||||||||||||| Sbjct 5127178 CCAAAACGAAGAACAAGAACAAGAACAACAAGAG 5127145 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 271 AAAAATACGAAGAAGAACGAGAACAACAAGAGAAA 305 || || | |||||| ||| | |||||||||||||| Sbjct 3215999 AAGAAGAAGAAGAACAACAACAACAACAAGAGAAA 3215965 Score = 37.4 bits (40), Expect = 7.5 Identities = 36/45 (80%), Gaps = 6/45 (13%) Strand=Plus/Plus Query 199 AATTTGAATTCTTTGAAGATTGTGA-----CATTTATTGTAGTTC 238 |||||||||||||||| |||| ||| |||| ||||| |||| Sbjct 11360969 AATTTGAATTCTTTGAGGATTTTGATGCTGCATTCATTGT-GTTC 11361012 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 220 GTGACATTTATTGTAGTTCCTCCTCCATTT 249 |||||||||||| ||| ||||||| |||| Sbjct 21915351 GTGACATTTATTTTAGAGCCTCCTCTATTT 21915322 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1092 TTTCTTTATATGGTCAATACATATATCATT 1121 ||| ||||||| | |||||||||||| ||| Sbjct 22945667 TTTATTTATATAGACAATACATATATAATT 22945696 Score = 37.4 bits (40), Expect = 7.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 265 TTCACCAAAAATACGAAGAAGAA 287 |||||||||||||| |||||||| Sbjct 42578766 TTCACCAAAAATACTAAGAAGAA 42578788 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 2.2 Identities = 44/58 (76%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 1747 AAGAAACAGAACATGATGAAGAAGATGACGGTGATGGAAGCGAGGAATCTTCTGATGA 1804 |||||| |||| |||||||||||| | | ||| ||| ||||||| |||| ||| Sbjct 26801536 AAGAAAAAGAAA--GATGAAGAAGATCAAAGAAGTGGGAGCAAGGAATCGTCTGGTGA 26801591 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 755 TCCTTACTCTCAACTTCAGCAAGTGTTTAG 784 |||| ||| |||| ||||||||||||| || Sbjct 12369463 TCCTAACTTTCAAATTCAGCAAGTGTTGAG 12369492 Score = 37.4 bits (40), Expect = 7.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 205 AATTCTTTGAAGATTGTGACATTTA 229 |||| |||||||||||||||| ||| Sbjct 23107296 AATTGTTTGAAGATTGTGACAATTA 23107272 Score = 37.4 bits (40), Expect = 7.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 205 AATTCTTTGAAGATTGTGACATTTA 229 |||| |||||||||||||||| ||| Sbjct 23118382 AATTGTTTGAAGATTGTGACAATTA 23118358 Score = 37.4 bits (40), Expect = 7.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 109 TGCTATATA-ACTTTTGAGGTATATAGTCTCT 139 ||||||||| | |||| | ||||||||||||| Sbjct 23878109 TGCTATATATAGTTTTAAAGTATATAGTCTCT 23878078 Score = 37.4 bits (40), Expect = 7.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1697 AGATGGAAATATAGAGAAAG 1716 |||||||||||||||||||| Sbjct 29266662 AGATGGAAATATAGAGAAAG 29266643 >Query1 on lcl|JrScfU0007| Query1 on lcl|JrScfU0007 Length=67448 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 375 AAATTGATGAAGAAGAAAGTGAAGCAATAT 404 ||||||||||||||||| ||||| |||| Sbjct 65006 AAATTGATGAAGAAGAAGTTGAAGAGATAT 64977 >Query1 on lcl|JrScfU0006| Query1 on lcl|JrScfU0006 Length=71448 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 375 AAATTGATGAAGAAGAAAGTGAAGCAATAT 404 ||||||||||||||||| ||||| |||| Sbjct 17426 AAATTGATGAAGAAGAAGTTGAAGAGATAT 17455 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1097 TTATATGGTCAATACATATATCATTGTTCC 1126 |||| || |||| ||| ||||||||||||| Sbjct 3429417 TTATTTGTTCAACACAAATATCATTGTTCC 3429388 Score = 37.4 bits (40), Expect = 7.5 Identities = 27/31 (87%), Gaps = 3/31 (10%) Strand=Plus/Minus Query 363 TACATCA---ATTACAAATTGATGAAGAAGA 390 ||||||| |||||||||||| |||||||| Sbjct 15492638 TACATCATATATTACAAATTGAAGAAGAAGA 15492608 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 7.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 380 GATGAAGAAGAAAGTGAAGCAATAT 404 |||||||||||||| ||||||||| Sbjct 4641015 GATGAAGAAGAAAGAAAAGCAATAT 4641039 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 2340 ATGCTTTTGAATGTTACTCTGCTTCCTTCTTTGA 2373 ||||| |||| | | |||||||||||||||||| Sbjct 5793946 ATGCTATTGA--GCTCCTCTGCTTCCTTCTTTGA 5793915 Score = 37.4 bits (40), Expect = 7.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 314 CTTTGGAAAAAAGCTCAAGGAACGTAGCATTGAAGAAT 351 |||| |||| ||| | || |||||||||||||| ||| Sbjct 8058160 CTTTCGAAATAAGTACCAGAAACGTAGCATTGAAAAAT 8058123 Score = 37.4 bits (40), Expect = 7.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 367 TCAATTACAAATTGATGAA-GAAGAAA 392 |||||||||||||||| || ||||||| Sbjct 10877959 TCAATTACAAATTGATTAATGAAGAAA 10877933 Score = 37.4 bits (40), Expect = 7.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 112 TATATAACTTTTGAGGTATATAGTCTCTTGAtttt 146 |||||||||||||| ||||| | | | ||||| || Sbjct 22883125 TATATAACTTTTGAAGTATAAACTATATTGATGTT 22883159 Score = 37.4 bits (40), Expect = 7.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 375 AAATTGATGAAGAAGAAAGTGAA 397 |||||||||||||||||| |||| Sbjct 26808492 AAATTGATGAAGAAGAAATTGAA 26808470 Score = 37.4 bits (40), Expect = 7.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 375 AAATTGATGAAGAAGAAAGTGAA 397 |||||||||||||||||| |||| Sbjct 26856828 AAATTGATGAAGAAGAAATTGAA 26856806 Score = 37.4 bits (40), Expect = 7.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 375 AAATTGATGAAGAAGAAAGTGAA 397 |||||||||||||||||| |||| Sbjct 27172894 AAATTGATGAAGAAGAAATTGAA 27172872 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 7.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 122 TTGAGGTATATAGTCTCTTGAttttttttt 151 |||| ||||||||||||| ||||||||| Sbjct 14456902 TTGACCTATATAGTCTCTTTTTTTTTTTTT 14456873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1320633894710 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2