BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=2555 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr6D 343 4e-92 lcl|Jr6S 327 3e-87 lcl|Jr1D 244 3e-62 lcl|Jr5S 42.8 0.18 lcl|Jr5D 42.8 0.18 lcl|Jr8S 41.0 0.63 lcl|Jr8D 41.0 0.63 lcl|Jr3D 41.0 0.63 lcl|JrScfU0007 39.2 2.2 lcl|JrScfU0006 39.2 2.2 lcl|Jr3S 39.2 2.2 lcl|Jr2D 39.2 2.2 lcl|Jr1S 39.2 2.2 lcl|Jr7D 37.4 7.7 lcl|Jr4S 37.4 7.7 lcl|Jr4D 37.4 7.7 lcl|Jr2S 37.4 7.7 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 343 bits (380), Expect = 4e-92 Identities = 360/472 (76%), Gaps = 6/472 (1%) Strand=Plus/Plus Query 953 TTCCTCTTCAAGATCCTGTAGTGGACTCAATTAGAGCGGCAGTGGATAGGCTAACGCGGT 1012 ||| ||| || |||||||| | || ||||| | ||| || ||||||||| |||| | | Sbjct 31969247 TTCATCTGCAGGATCCTGTCATTGATTCAATAAAAGCAGCTGTGGATAGGTTAACCCACT 31969306 Query 1013 CAACAAACTTTCTACACTTCATGGCTCAGCACGCGCTTATAATGCAAGAAGAGTTACCAA 1072 ||||||| || || |||| |||| || || || || || |||||||| ||| |||| | Sbjct 31969307 CAACAAATTTCCTCAACTTTTTGGCGCAACATGCACTCATTATGCAAGACGAGCTACCTA 31969366 Query 1073 GTCCACAAGATGAGGAAGGGGAAGAAGAAGATGGGAGATATCACTTCATGTCTCTCTTGT 1132 ||| | |||||| | ||| || ||| || ||| || || ||||| || | | Sbjct 31969367 CTCCT---GTTGAGGA---GCAAGTTGATGATCAGAAATACCATTTTATGTCGCTTCTCT 31969420 Query 1133 TGAATTTGGTCAACACGTTTCTCTATATGGTCAATACCTATATCATTGTCCCTACAGCAG 1192 |||| ||||| ||||| ||||| |||||||||||||| |||||| ||||||||||||||| Sbjct 31969421 TGAACTTGGTGAACACATTTCTTTATATGGTCAATACATATATCGTTGTCCCTACAGCAG 31969480 Query 1193 ATGACTATTCAATGAGCCTCGGTGCAGCAGCAACGGTGTGTGGTGTTGTGATTGGTGCTA 1252 ||||||| || ||||||| || || ||||| || || |||||| |||||||||| || | Sbjct 31969481 ATGACTACTCCTTGAGCCTTGGAGCTGCAGCGACAGTTTGTGGTATTGTGATTGGGGCAA 31969540 Query 1253 TGGCTGTAGCTCAGCTCTTCTCTTCGGTTTACTTCAGTGCCTGGTCCAATAGATCCTACT 1312 ||||||| || || |||| |||||||| || || ||||| ||||| |||| ||| |||| Sbjct 31969541 TGGCTGTTGCACAAGTCTTTTCTTCGGTGTATTTTAGTGCATGGTCAAATAAATCATACT 31969600 Query 1313 TCAAACCACTCATATTCAGTAGCATTGTTCTCTTCATTGGGAACTTGTTATATGCATTAG 1372 ||||||| || ||||| || || | ||||| || | || ||| | || || || || | Sbjct 31969601 TCAAACCTCTTATATTTAGCAGTGTAGTTCTTTTTGTGGGAAACATCTTGTACGCGTTGG 31969660 Query 1373 CTTTTGACTTCAATTCAATAGCGGTTCTCTTGATCGGGCGGCTTTTCTGTGG 1424 ||| ||| | |||| ||||||||||| | || ||||| ||||||||||| Sbjct 31969661 CTTATGATCTTGATTCGATAGCGGTTCTTCTAATTGGGCGTCTTTTCTGTGG 31969712 Score = 215 bits (238), Expect = 1e-53 Identities = 240/318 (75%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 543 TCAGATCGAGAAAATCGCTCTTTTCATGTTGGAGCAACAAGGGTTGCTTGCAAGCAGGCT 602 |||||||||||| || | ||||| ||||||| || |||||| | |||||||||||||| Sbjct 31968553 TCAGATCGAGAAGATTGTCCTTTTTCTGTTGGAACAGCAAGGGCTACTTGCAAGCAGGCT 31968612 Query 603 ACAGACACTAAGGGGATCAC-ACGATGCTCTCCAGGAGCAGCCAGACATATCCCACATGT 661 | | || | || ||| | || | | ||| ||||||| || |||||||| || | Sbjct 31968613 AGCTATGCT-TGCTGAACACAATAATACCCCTCAGCAGCAGCCTGAAATATCCCAAATAT 31968671 Query 662 CTTATCTAAAGGAAGAGTATAGAGCTGTTGGGCAAGATCTTCTCAAGCTTTTGTTTTTCG 721 | | ||| |||| |||||||| || || || |||| | |||||| | ||||| | Sbjct 31968672 CGGAATTAAGAGAAGCTTATAGAGCAGTGGGACAGCATCTGTTAAAGCTTCTCTTTTTTG 31968731 Query 722 TTGAGATGAATGCTATTGGTATCCGTAAGATACTGAAGAAATTTGACAAACGGTTTGGTT 781 ||||||| |||||||||||| | || |||||||||||||| ||||| ||||| ||||||| Sbjct 31968732 TTGAGATAAATGCTATTGGTCTGCGGAAGATACTGAAGAAGTTTGATAAACGTTTTGGTT 31968791 Query 782 ATCGATTCACAAACTATTATGTCAAGACTAGAGCTAACCATCCTTACTCTGAACTCCAGC 841 | |||| || || | ||||||||| || | || || |||||||| ||| | || |||| Sbjct 31968792 ACAGATTGACTAATTCTTATGTCAAAACACGTGCAAATCATCCTTATTCTCAGCTGCAGC 31968851 Query 842 AAGTCTTTAGACATGTGG 859 |||| || | ||||||| Sbjct 31968852 AAGTGTTCAAGCATGTGG 31968869 Score = 210 bits (232), Expect = 6e-52 Identities = 208/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 1429 GGATCGGCGAGAGCAGTGAACCGGAGATATATAAGCGACTGTGTACCGTTAAAGATCAGG 1488 || || || ||||| || |||||||| ||||| || || |||||||| |||| | | | Sbjct 31970258 GGTTCTGCCAGAGCTGTCAACCGGAGGTATATTAGTGATTGTGTACCACTAAAAACCCGA 31970317 Query 1489 ATGCAAGCTTCTGCGGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCGTGTGGTCCTGCG 1548 ||||| || || || |||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 31970318 ATGCAGGCGTCGGCAGGTTTTGTTAGTGCCAGTGCTCTTGGAATGGCTTGTGGTCCTGCC 31970377 Query 1549 CTTGCTGGTCTATTGCAAATTAGATTCAAGATCTATAAACTTACATTTAACCAAGATACA 1608 || |||||| | | |||| || ||||||||||| || ||||| || || ||| | || Sbjct 31970378 CTGGCTGGTTTGCTTCAAACTAATTTCAAGATCTACAAGCTTACTTTCAATCAAAACACC 31970437 Query 1609 TTGCCTGGTTGGGTTATGGCTGTAGCTTGGCTTATATACTTGGTCTGGTTAGCTATATCG 1668 ||||||| |||||||||||||| ||||||| |||||||| | ||||| | || || Sbjct 31970438 CTGCCTGGCTGGGTTATGGCTGTTACTTGGCTAATATACTTAATTTGGTTGGGGATCTCA 31970497 Query 1669 TTTCGTGAGCCTGCACGTGAGCCTGAGGA 1697 ||| || ||| | ||||| |||| || Sbjct 31970498 TTTAAAGAACCTTCTCGTGAAACTGAAGA 31970526 Score = 143 bits (158), Expect = 7e-32 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 1912 GTTCAACTATTGATATACTTCATGCTCAAGTATGCAATGGAGATTCTTCTCTCTGAATCT 1971 ||||| || |||||||| ||||||||||| || | ||||||||| | | || ||||| Sbjct 31972240 GTTCAGCTGTTGATATATTTCATGCTCAAATACGTGATGGAGATTTTAATTTCAGAATCA 31972299 Query 1972 AGTGTCATCACCACTTACTACTTTGGTTGGTCAACGAGCTCTGTTGCGATCTT-CTTGTT 2030 ||||| | ||||| ||||||||| ||||| || ||| ||| ||||| || |||| | Sbjct 31972300 AGTGTTGTTACCACATACTACTTTCAGTGGTCTACAAGCAGTGTGGCGATTTTTCTTGCT 31972359 Query 2031 TTGTCTCGGTCTCACGGTTCTTCCAGTTAACCTCGTCGTTGGAAGCTATATAAGCAACAT 2090 | ||| || |||||||||||||||||||| | || | |||| ||| || ||||| || Sbjct 31972360 TC-TCTTGGCCTCACGGTTCTTCCAGTTAATATTGTTATAGGAAACTACATTAGCAATAT 31972418 Query 2091 GTTCGAAGACCGG 2103 ||| |||||| || Sbjct 31972419 GTTTGAAGACAGG 31972431 Score = 132 bits (146), Expect = 1e-28 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 2102 GGCAAATCCTGTTGGTCTCGGAGATTATGGTCTGTGTAGGAATACTTCTGAGCTTCCATG 2161 ||||||| | |||| || || ||||| || || ||||| |||| |||||||||||| Sbjct 31972808 GGCAAATTTTATTGGCATCTGAAATTATAGTTTGCGTAGGCGTACTCCTGAGCTTCCATA 31972867 Query 2162 TCGTTGTTCCCTACACTGTGCCACAATACGTTTGCTCAGGACTCATCATGTTTGTTTCTG 2221 | | |||| ||| |||||||||| ||||| ||||| ||||||||| |||||||||||| Sbjct 31972868 TTATAATTCCATACTCTGTGCCACAGTACGTCTGCTCTGGACTCATCCTGTTTGTTTCTG 31972927 Query 2222 CAGAAGTTCTTGAAGGTG 2239 | ||||| |||||||||| Sbjct 31972928 CCGAAGTACTTGAAGGTG 31972945 Score = 118 bits (130), Expect = 3e-24 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 2235 AGGTGTCAATCTATCGTTACTCTCGAGAGTCATGTCGTCGAGGCTATCGAGAGGAACTTA 2294 |||||||||||| | | ||||| | ||||||||||| ||||||| | ||||| | Sbjct 31973186 AGGTGTCAATCTGGCACTCCTCTCACGCGTCATGTCGTCCCGGCTATCCCGTGGAACCTT 31973245 Query 2295 TAACGGAGGTTTGCTTTCGACGGAGGCTGGCACGATCGCACGTGTGATTGCTGACGCGAC 2354 |||||| || | || || || || || || || |||||||| ||| | || || | || Sbjct 31973246 TAACGGTGGACTACTCTCAACAGAAGCAGGGACAATCGCACGAGTGGTGGCAGATGGCAC 31973305 Query 2355 GATTACCGTCGCCGGTTTCTTTGGACGGAATATGCTTTTGAATGTTACACTGCTTCCGTC 2414 ||| || | || || | ||| || || || || |||||||| || |||||||| || Sbjct 31973306 GATAACATTGGCTGGGTACTTGGGGGAGAGTAAACTGTTGAATGTCACCCTGCTTCCTTC 31973365 Query 2415 TCTAGTCATTTGTGTTTTGTCCATCGTAGCTACTTGTTTTACTTATAACTCCTTGTATTA 2474 || ||||||| | | |||||| | || || || || || || ||||| | ||||| Sbjct 31973366 ACTCTTCATTTGCATATCCTCCATCTTTGCCACCTGCTTCACCTACAACTCTCTCTATTA 31973425 Query 2475 GTA 2477 || Sbjct 31973426 ATA 31973428 Score = 104 bits (114), Expect = 6e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 865 GGAGCTGTTGTTGGAGCCGTATCTCGCAACCTTCATGAGCTTCAAAACAATCAAGGAAGC 924 |||||||| || |||||| |||| ||||| |||||||| ||||| || ||||||||| Sbjct 31968998 GGAGCTGTCGTGGGAGCCATATCACGCAATCTTCATGAACTTCAGGACCGTCAAGGAAGT 31969057 Query 925 TACTTATCGATTTATGATCAACCAGTTCTTCCTCTTCAAGATCCTGT 971 |||||||| || ||||||||||| | |||||| || || | | |||| Sbjct 31969058 TACTTATCAATATATGATCAACCTGCTCTTCCCCTCCAGGTTTCTGT 31969104 Score = 80.6 bits (88), Expect = 7e-13 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 425 GATATTATATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATAGTCGCCAATTAG 484 ||||||||||||| || ||| | |||||||| || || ||||||||| || ||| | | Sbjct 31967684 GATATTATATCAACTATAAACTCATGAAGAAAAAGGTAAAGCAATATGCTCAACAAATTG 31967743 Query 485 AAGGAGGCAATCTTGAGCGCCGTCATGTTCTTAAAGATTTCTCAAGGATGCTTGATAATC 544 ||| || | | || ||| | ||||| || || || |||||||| ||| | ||||| | Sbjct 31967744 AAGTTGGGATACAAGATCGCAGGCATGTACTAAAGGACTTCTCAAGAATGTTAGATAACC 31967803 Query 545 AG 546 || Sbjct 31967804 AG 31967805 Score = 62.6 bits (68), Expect = 2e-07 Identities = 49/59 (83%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 370 AAGATGGTAGCCTTCGGGAAAAAACTCAAGGAACGGAGCATTCAAGAATGGCAAGGATA 428 |||||||| |||||||||||||| | |||||| | ||||||||||||||||| || Sbjct 31966094 AAGATGGTTGCCTTCGGGAAAAAGTTGAAGGAAAGACAGATTCAAGAATGGCAAGGGTA 31966152 Score = 59.0 bits (64), Expect = 2e-06 Identities = 113/167 (68%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1753 CTGGAGAAAGGTATGAAACAACCACTTCTGCTTACATCAGAAGAGAT------AGAAGAA 1806 || ||||| || | ||||||||| | || || |||||||| | ||| ||| Sbjct 31970949 CTTGAGAATGGACTTAAACAACCATTGCTTACTAGTTCAGAAGACAAGCAACAAGATGAA 31971008 Query 1807 CAGGGTGAAGATGAATGTGATGGAAGCGAAGAAGCTTCCGAGGATTCTCGTACACCTGCA 1866 | |||| | ||| |||||| ||| ||||||||||| || |||| ||| || Sbjct 31971009 GATAGTGAGCAAGAACGTGATGAAAGTGAAGAAGCTTCTCCAGAATCTCACGGACCAGCT 31971068 Query 1867 AACTCCATTTTAGCTGCTTATAGATTACTGACACCTTCAGTAAAAGT 1913 | || ||| | | || |||||| |||| ||||| || ||||| || Sbjct 31971069 ACTTCAATTCGATCGGCATATAGACTACTTACACCCTCTGTAAAGGT 31971115 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2502 AATAAATCAAATCTATGCAATTA 2524 ||||||||||| ||||||||||| Sbjct 3811658 AATAAATCAAAACTATGCAATTA 3811636 Score = 37.4 bits (40), Expect = 7.7 Identities = 32/39 (82%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 397 AAGGAACGGAGCATTCAAGAATGGCAAGGATATTATATC 435 |||||| ||| ||||||||||| ||| |||||| ||| Sbjct 6170820 AAGGAAAAGAG--TTCAAGAATGGGAAGAATATTAAATC 6170784 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1144 AACACGTTTCTCTATATGGTCAA 1166 ||||| ||||||||||||||||| Sbjct 11306956 AACACATTTCTCTATATGGTCAA 11306934 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGATGG 1106 |||| || ||||||||||||||| |||| Sbjct 23917701 AAGAGGAAGAAGGGGAAGAAGAAAATGG 23917674 Score = 37.4 bits (40), Expect = 7.7 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 2490 ATTTTACCCCATAATAAATCAAATCTATGCAATTA 2524 |||||| | |||| |||||||||||| |||| || Sbjct 28359361 ATTTTAGCAGATAAAAAATCAAATCTAGGCAAATA 28359395 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 327 bits (362), Expect = 3e-87 Identities = 361/474 (76%), Gaps = 10/474 (2%) Strand=Plus/Plus Query 953 TTCCTCTTCAAGATCCTGTAGTGGACTCAATTAGAGCGGCAGTGGATAGGCTAACGCGGT 1012 || |||| || |||||||| || |||||||| ||||| || ||||| || | || | | Sbjct 21250697 TTTCTCTACAGGATCCTGTCGTTGACTCAATAAGAGCAGCCGTGGACAGATTGACTCACT 21250756 Query 1013 CAACAAACTTTCTACACTTCATGGCTCAGCACGCGCTTATAATGCAAGAAGAGTTACCAA 1072 ||||||| || || |||| |||| || || || || || |||||||| ||| | || | Sbjct 21250757 CAACAAATTTCCTCAACTTTTTGGCGCAACATGCTCTCATTATGCAAGATGAGCTGCCTA 21250816 Query 1073 GTCCACAAGATGAGGAAGGGGAAGAAGAAGATGGGAGATATCACTTCATGTCTCTCTTGT 1132 ||| || ||||||| ||| || ||| || ||| || || || || || | | Sbjct 21250817 CTCC-CAT--TGAGGAAC---AAGTTGATGATCAGAAATACCATTTTATATCACTTCTCT 21250870 Query 1133 TGAATTTGGTCAACACGTTTCTCTATATGGTCAATACCTATATCATTGTCCCTACAGCAG 1192 |||| |||| |||||| ||||| |||||||||||||| ||||| |||| |||||||||| Sbjct 21250871 TGAACTTGGCCAACACATTTCTTTATATGGTCAATACATATATTGTTGTTCCTACAGCAG 21250930 Query 1193 ATGACTATTCAATGAGCCTCGGTGCAGCAGCAACGGTGTGTGGTGTTGTGATTGGTGCTA 1252 ||||||| || ||||||| || || |||||||| || |||||| ||||||||||||| | Sbjct 21250931 ATGACTACTCCTTGAGCCTTGGAGCTGCAGCAACAGTTTGTGGTATTGTGATTGGTGCAA 21250990 Query 1253 TGGCTGTAGCTCAGCTCTTCTCTTCGGTTTACTTCAGTGCCTGGTCCAATAGATCCTACT 1312 |||| || || ||| | || |||||||| || || ||||| ||||| |||| ||| |||| Sbjct 21250991 TGGCAGTTGCCCAGGTGTTTTCTTCGGTGTATTTTAGTGCATGGTCAAATAAATCATACT 21251050 Query 1313 TCAAACCACTCATATTCAGTAGCATTGTTCTCTTCAT-TGGG-AACTTGTTATATGCATT 1370 || |||| || |||| || || || | |||||| | |||| ||| || |||||||| Sbjct 21251051 TCCAACCTCTTGTATTTAGCAGTATAG--CTCTTCTTGTGGGAAACACCTTGTATGCATT 21251108 Query 1371 AGCTTTTGACTTCAATTCAATAGCGGTTCTCTTGATCGGGCGGCTTTTCTGTGG 1424 |||| ||| | ||||| |||||||||||| | || || || ||||||||||| Sbjct 21251109 GGCTTATGATCTTAATTCGATAGCGGTTCTCCTAATTGGCCGCCTTTTCTGTGG 21251162 Score = 221 bits (244), Expect = 3e-55 Identities = 200/252 (79%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 1420 TGTGGATTGGGATCGGCGAGAGCAGTGAACCGGAGATATATAAGCGACTGTGTACCGTTA 1479 ||| ||||||| || || ||||| || |||||||| ||||| || || |||||||| | Sbjct 21252081 TGTAGATTGGGTTCTGCAAGAGCTGTTAACCGGAGGTATATCAGTGATTGTGTACCTCTG 21252140 Query 1480 AAGATCAGGATGCAAGCTTCTGCGGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCGTGT 1539 || ||| | ||||| || || || | |||||||||||| |||||||| |||||||| ||| Sbjct 21252141 AAAATCCGCATGCAGGCATCAGCAGCTTTTGTTAGTGCCAGTGCTCTTGGAATGGCCTGT 21252200 Query 1540 GGTCCTGCGCTTGCTGGTCTATTGCAAATTAGATTCAAGATCTATAAACTTACATTTAAC 1599 |||||||| || |||||| | | |||| || || | |||||| || |||||||| || Sbjct 21252201 GGTCCTGCTCTAGCTGGTTTGCTTCAAACTAATTTTAGGATCTACAAGCTTACATTCAAT 21252260 Query 1600 CAAGATACATTGCCTGGTTGGGTTATGGCTGTAGCTTGGCTTATATACTTGGTCTGGTTA 1659 ||||| || |||||||| |||||||||||||| |||||||| |||||||| | ||||| Sbjct 21252261 CAAGACACCTTGCCTGGCTGGGTTATGGCTGTTGCTTGGCTAATATACTTAATTTGGTTG 21252320 Query 1660 GCTATATCGTTT 1671 ||| || ||| Sbjct 21252321 TGTATCTCATTT 21252332 Score = 210 bits (232), Expect = 6e-52 Identities = 239/318 (75%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 543 TCAGATCGAGAAAATCGCTCTTTTCATGTTGGAGCAACAAGGGTTGCTTGCAAGCAGGCT 602 |||||| ||||| || | ||||| ||||||| ||||||||| | || ||||||||| | Sbjct 21250026 TCAGATTGAGAAGATTGTCCTTTTTCTGTTGGAACAACAAGGGATACTAGCAAGCAGGTT 21250085 Query 603 ACAGACACTAAGGGGATCA-CACGATGCTCTCCAGGAGCAGCCAGACATATCCCACATGT 661 | | || | || || || ||| | || ||| |||| || || || || || || | Sbjct 21250086 AGCTAAGCTT-GATGAACAGCATGATTCCCTTCAGCAGCAACCTGATATGTCTCAAATAT 21250144 Query 662 CTTATCTAAAGGAAGAGTATAGAGCTGTTGGGCAAGATCTTCTCAAGCTTTTGTTTTTCG 721 || | || |||| |||||||| || || | ||||||| | |||||| | ||||| | Sbjct 21250145 CTGAATTACGAGAAGCTTATAGAGCAGTGGGACGAGATCTTTTAAAGCTTCTCTTTTTTG 21250204 Query 722 TTGAGATGAATGCTATTGGTATCCGTAAGATACTGAAGAAATTTGACAAACGGTTTGGTT 781 ||||||| || ||||||||| | || |||||||||||||| ||||| ||||| || |||| Sbjct 21250205 TTGAGATAAACGCTATTGGTCTGCGGAAGATACTGAAGAAGTTTGATAAACGCTTCGGTT 21250264 Query 782 ATCGATTCACAAACTATTATGTCAAGACTAGAGCTAACCATCCTTACTCTGAACTCCAGC 841 || ||||||| || ||||| ||||| || | || || ||||||||||| | || |||| Sbjct 21250265 ATAGATTCACTAATTATTACGTCAAAACACGTGCAAATCATCCTTACTCCCAGCTGCAGC 21250324 Query 842 AAGTCTTTAGACATGTGG 859 |||| || | ||||||| Sbjct 21250325 AAGTGTTCAAGCATGTGG 21250342 Score = 152 bits (168), Expect = 1e-34 Identities = 153/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 1912 GTTCAACTATTGATATACTTCATGCTCAAGTATGCAATGGAGATTCTTCTCTCTGAATCT 1971 ||||| | |||||||| ||||||||||| |||| |||||||||| | || || ||||| Sbjct 21253646 GTTCAGTTGTTGATATATTTCATGCTCAAATATGTAATGGAGATTTTACTTTCAGAATCA 21253705 Query 1972 AGTGTCATCACCACTTACTACTTTGGTTGGTCAACGAGCTCTGTTGCGA-TCTTCTTGTT 2030 ||||| || ||||| ||||||||| ||||| |||||| | || || | | |||||| Sbjct 21253706 AGTGTTATTACCACATACTACTTTCACTGGTCTACGAGCACAGTGGCAATTTTTCTTG-C 21253764 Query 2031 TTGTCTCGGTCTCACGGTTCTTCCAGTTAACCTCGTCGTTGGAAGCTATATAAGCAACAT 2090 || || || || || ||||||||||| ||| |||| ||||||| || || ||||| || Sbjct 21253765 TTCCCTTGGCCTGACAGTTCTTCCAGTAAACATCGTTGTTGGAAATTACATTAGCAATAT 21253824 Query 2091 GTTCGAAGACCGGCAA 2106 ||| |||||| || || Sbjct 21253825 GTTTGAAGACAGGTAA 21253840 Score = 123 bits (136), Expect = 7e-26 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 2102 GGCAAATCCTGTTGGTCTCGGAGATTATGGTCTGTGTAGGAATACTTCTGAGCTTCCATG 2161 |||| || || |||| || || ||| |||| || |||| ||||| |||||||||||| Sbjct 21254046 GGCAGATTCTATTGGCGTCTGAAATTGTGGTTTGCATAGGCATACTCCTGAGCTTCCATA 21254105 Query 2162 TCGTTGTTCCCTACACTGTGCCACAATACGTTTGCTCAGGACTCATCATGTTTGTTTCTG 2221 | | ||| ||| |||||||||| || || ||||||||||||||| |||||||||||| Sbjct 21254106 TAATAAATCCGTACTCTGTGCCACAGTATGTCTGCTCAGGACTCATCGTGTTTGTTTCTG 21254165 Query 2222 CAGAAGTTCTTGAAGGTG 2239 | || || |||||||||| Sbjct 21254166 CCGAGGTACTTGAAGGTG 21254183 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 865 GGAGCTGTTGTTGGAGCCGTATCTCGCAACCTTCATGAGCTTCAAAACAATCAAGGAAGC 924 || |||||||| ||||| ||||| || || |||||||| ||||| || || |||||| Sbjct 21250451 GGGGCTGTTGTGGGAGCTGTATCGCGAAATCTTCATGAACTTCAGAATCGGCAGGGAAGC 21250510 Query 925 TACTTATCGATTTATGATCAACCAGTTCTTCCTCTTCAAGATCCTGT 971 ||||||||||| ||||||||||| | |||||| || || | | |||| Sbjct 21250511 TACTTATCGATATATGATCAACCTGCTCTTCCCCTCCAGGTTTCTGT 21250557 Score = 82.4 bits (90), Expect = 2e-13 Identities = 114/160 (71%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 1760 AAGGTATGAAACAACCACTTCTGCTTACATCAGAAGAGAT------AGAAGAACAGGGTG 1813 |||| | ||||||||| | || ||| |||||||| | ||||||| | ||| Sbjct 21252765 AAGGACTTAAACAACCATTGCTTGTTAGTTCAGAAGATAAGCAACAAGAAGAAGATAGTG 21252824 Query 1814 AAGATGAATGTGATGGAAGCGAAGAAGCTTCCGAGGATTCTCGTACACCTGCAAACTCCA 1873 | | |||||||||| ||| ||||||||||| ||||| ||||| ||| || | || | Sbjct 21252825 AGCAAGAATGTGATGAAAGTGAAGAAGCTTCTGAGGAATCTCGCCGACCAGCTACTTCAA 21252884 Query 1874 TTTTAGCTGCTTATAGATTACTGACACCTTCAGTAAAAGT 1913 || | | || |||||| |||| ||||| || || || || Sbjct 21252885 TTCGATCAGCATATAGACTACTTACACCCTCTGTGAAGGT 21252924 Score = 77.0 bits (84), Expect = 9e-12 Identities = 89/120 (74%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 427 TATTATATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATAGTCGCCAATTAGAA 486 ||||| || || || ||| | |||||||| | ||| || |||||| || ||| | ||| Sbjct 21249122 TATTACATTAACTATAAACTCATGAAGAAAAGAGTAAAACAATATGTTCAACAAATTGAA 21249181 Query 487 GGAGGCAATCTTGAGCGCCGTCATGTTCTTAAAGATTTCTCAAGGATGCTTGATAATCAG 546 | || | || || || || ||||| || || ||||||||||| ||| | ||||||||| Sbjct 21249182 GTTGGGACTCAAGATCGACGGCATGTACTCAAGGATTTCTCAAGAATGTTGGATAATCAG 21249241 Score = 55.4 bits (60), Expect = 3e-05 Identities = 48/60 (80%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 370 AAGATGGTAGCCTTCGGGAAAAAACTCAAGGAACGGAGCATTCAAGAATGGCAAGGATAT 429 |||||||| ||||| ||||||| | |||||| | ||||||||||||||||| ||| Sbjct 21247356 AAGATGGTTGCCTTTGGGAAAAGGTTGAAGGAAAGACAAATTCAAGAATGGCAAGGGTAT 21247415 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2214 TGTTTCTGCAGAAGTTCTTGAAGGT 2238 |||||||||||| |||| ||||||| Sbjct 22921842 TGTTTCTGCAGATGTTCCTGAAGGT 22921818 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 244 bits (270), Expect = 3e-62 Identities = 334/467 (72%), Gaps = 12/467 (3%) Strand=Plus/Plus Query 961 CAAGATCCTGTAGTGGACTCAATTAGAGCGGCAGTGGATAGGCTAACGCGGTCAACAAAC 1020 || |||||||| | || || ||||| | || || || | || | |||||||| Sbjct 47181932 CAGGATCCTGTCATCGATTCTATTAGGTCAGCTGTAGAGAAATTATCAAACTCAACAAAT 47181991 Query 1021 TTTCTACACTTCATGGCTCAGCACGCGCTTATAATGCAAGAAGAGTTACCAAGTCCA--- 1077 | |||||||| ||| ||||| |||| ||| | || || || |||| |||| Sbjct 47181992 TACCTACACTTTTTGGGAAGACACGCCTTTATCATGGAGGACGACTTGCCAACTCCATCT 47182051 Query 1078 CAAGATGAGGAAGGGGAAGAAGAAGATGGGAGATATCACTTCATGTCTCTCTTGTTGAAT 1137 |||||||| | || | ||||||||| || ||||| || | |||| Sbjct 47182052 CAAGATGATACTGCTGACCA---------GAGATATCATTTTATGTCACTTCTCCTGAAC 47182102 Query 1138 TTGGTCAACACGTTTCTCTATATGGTCAATACCTATATCATTGTCCCTACAGCAGATGAC 1197 ||||| ||||| ||||| ||||||||||| || || ||||| || || |||||||| | Sbjct 47182103 TTGGTAAACACATTTCTATATATGGTCAACACATACATCATAGTTCCGACAGCAGACAGC 47182162 Query 1198 TATTCAATGAGCCTCGGTGCAGCAGCAACGGTGTGTGGTGTTGTGATTGGTGCTATGGCT 1257 || || ||||||| || || |||||||| || ||||| |||||||| || |||||||| Sbjct 47182163 TACTCCTTGAGCCTTGGAGCTGCAGCAACAGTCTGTGGAGTTGTGATAGGGTCTATGGCT 47182222 Query 1258 GTAGCTCAGCTCTTCTCTTCGGTTTACTTCAGTGCCTGGTCCAATAGATCCTACTTCAAA 1317 || |||||| | || ||||| ||||| || ||||| ||||| |||||||| ||||||| Sbjct 47182223 GTTGCTCAGGTGTTTTCTTCAGTTTATTTTAGTGCATGGTCAAATAGATCGTACTTCAGG 47182282 Query 1318 CCACTCATATTCAGTAGCATTGTTCTCTTCATTGGGAACTTGTTATATGCATTAGCTTTT 1377 || || |||| ||||| |||| || | | || ||| |||||||| | |||| | Sbjct 47182283 CCCCTTGTATTTAGTAGTGTTGTCCTTCTTGTGGGAAACACCTTATATGCTCTGGCTTAT 47182342 Query 1378 GACTTCAATTCAATAGCGGTTCTCTTGATCGGGCGGCTTTTCTGTGG 1424 || | ||||||||| | ||||| |||| || ||||| |||||||| Sbjct 47182343 GATCTGAATTCAATATCTGTTCTTCTGATTGGTCGGCTCTTCTGTGG 47182389 Score = 176 bits (194), Expect = 1e-41 Identities = 232/318 (73%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 544 CAGATCGAGAAAATCGCTCTTTTCATGTTGGAGCAACAAGGGTTGCTTGCAAGCAGGCTA 603 |||||||| | || | |||||| || | || ||||||||| ||||| | |||| || Sbjct 47180915 CAGATCGAAAGGATTGTCCTTTTCCTGCTAGAACAACAAGGGCAACTTGCTACCAGGTTA 47180974 Query 604 -CAGACACTAAGGGGATCA-CACGATGCTCTCCAGGAGCAGCCAGACATATCCCACATGT 661 | ||| || | || || || ||||||| |||||||||| ||| || | Sbjct 47180975 TCTGACCTTA--GAGAGCAGCAGCATGCTCTTTTACAGCAGCCAGATGGATCAAGAATAT 47181032 Query 662 CTTATCTAAAGGAAGAGTATAGAGCTGTTGGGCAAGATCTTCTCAAGCTTTTGTTTTTCG 721 || | || |||||| |||||||| ||||| |||||| | | ||| | | ||| | Sbjct 47181033 CTGAATTACAGGAAGCATATAGAGCAGTTGGATGTGATCTTTTAAGACTTCTCTCTTTTG 47181092 Query 722 TTGAGATGAATGCTATTGGTATCCGTAAGATACTGAAGAAATTTGACAAACGGTTTGGTT 781 ||||||| ||||| |||||| | ||||||||| |||| |||||||| || |||||||||| Sbjct 47181093 TTGAGATCAATGCCATTGGTTTACGTAAGATATTGAAAAAATTTGATAAGCGGTTTGGTT 47181152 Query 782 ATCGATTCACAAACTATTATGTCAAGACTAGAGCTAACCATCCTTACTCTGAACTCCAGC 841 || ||||| ||||| |||||||| ||| | || |||||||||||||| | || | | Sbjct 47181153 ATAAGTTCACCAACTACTATGTCAAAACTCGTGCAAACCATCCTTACTCCCAGCTGCGAC 47181212 Query 842 AAGTCTTTAGACATGTGG 859 |||| || | ||||||| Sbjct 47181213 AAGTTTTCAAGCATGTGG 47181230 Score = 167 bits (184), Expect = 6e-39 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 1426 TTGGGATCGGCGAGAGCAGTGAACCGGAGATATATAAGCGACTGTGTACCGTTAAAGATC 1485 || || || || || || || ||| || | ||||| || || ||||||||| | || | Sbjct 47182941 TTAGGTTCTGCAAGGGCTGTTAACAGGCGTTATATCAGTGATTGTGTACCGCTCAAATTG 47183000 Query 1486 AGGATGCAAGCTTCTGCGGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCGTGTGGTCCT 1545 || ||||| || ||||| |||||||| ||||| ||||| || |||||||| |||||||| Sbjct 47183001 AGAATGCAGGCGTCTGCAGGTTTTGTAAGTGCGAGTGCGCTTGGAATGGCATGTGGTCCA 47183060 Query 1546 GCGCTTGCTGGTCTATTGCAAATTAGATTCAAGATCTATAAACTTACATTTAACCAAGAT 1605 || ||| || || || | || | | || ||||| | |||||||| || || | ||| Sbjct 47183061 GCTCTTTCTTGTTTACTACAGACGAATTTTAAGATTTCAAAACTTACTTTCAATGAGGAT 47183120 Query 1606 ACATTGCCTGGTTGGGTTATGGCTGTAGCTTGGCTTATATACTTGGTCTGGTTAGCTATA 1665 ||||||||||||||| ||||| | | || |||||| | ||||| | |||||| || Sbjct 47183121 ACATTGCCTGGTTGGCTTATGAGTCTTGCGTGGCTTGTCTACTTATTGTGGTTATGGATT 47183180 Query 1666 TCGTTTCGTGAGCCTGCACGTGAGCCT 1692 || ||| | |||||| | | |||| || Sbjct 47183181 TCTTTTAGAGAGCCTTCTCTTGAGACT 47183207 Score = 136 bits (150), Expect = 1e-29 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 1912 GTTCAACTATTGATATACTTCATGCTCAAGTATGCAATGGAGATTCTTCTCTCTGAATCT 1971 ||||||||||| | || || |||||||| ||||| ||||||||| | || ||||||| Sbjct 47184382 GTTCAACTATTTGTGTATTTTATGCTCAAATATGCCATGGAGATTTTACTTGCTGAATCA 47184441 Query 1972 AGTGTCATCACCACTTACTACTTTGGTTGGTCAACGAGCTCTGTTGCGATC-TTCTTGTT 2030 ||||||||||| || || ||| |||| ||| ||| ||| || ||| |||||| Sbjct 47184442 AGTGTCATCACTGGATATTATTTTATTTGGACAAGCAGCAGTGTGGCAATCTTTCTTG-C 47184500 Query 2031 TTGTCTCGGTCTCACGGTTCTTCCAGTTAACCTCGTCGTTGGAAGCTATATAAGCAACAT 2090 |||||||| || || || |||||||| ||| | | ||||||| |||||| ||||||| Sbjct 47184501 ATGTCTCGGGCTAACAGTGCTTCCAGTAAACATTATTGTTGGAAACTATATCGGCAACAT 47184560 Query 2091 GTTCGAAGA 2099 ||| ||||| Sbjct 47184561 GTTTGAAGA 47184569 Score = 51.8 bits (56), Expect = 3e-04 Identities = 36/41 (88%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 430 TATATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATA 470 || |||||||||||||| |||||||||||||| || | ||| Sbjct 47180341 TACATCAATTACAAATTAATGAAGAAGAAAGTTAATCGATA 47180381 Score = 41.0 bits (44), Expect = 0.63 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGA 1103 |||||| |||||||||||||||||| Sbjct 48258929 AAGATGTGGAAGGGGAAGAAGAAGA 48258953 Score = 39.2 bits (42), Expect = 2.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1077 ACAAGATGAGGAAGGGGAAGAAGAAGATGGG 1107 |||||| || |||| ||||||||||||||| Sbjct 36315635 ACAAGAAGAAGAAGAAGAAGAAGAAGATGGG 36315665 Score = 37.4 bits (40), Expect = 7.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 185 TTAAAATAATATTTCTAATG 204 |||||||||||||||||||| Sbjct 3271369 TTAAAATAATATTTCTAATG 3271388 Score = 37.4 bits (40), Expect = 7.7 Identities = 36/45 (80%), Gaps = 1/45 (2%) Strand=Plus/Minus Query 158 tctCACCGTATCCCAATTCAACTCTCATTAAAATAATATTTCTAA 202 ||||| | |||| ||| ||||||| | ||||||||| |||||| Sbjct 10479303 TCTCAACTTATCTCAACTCAACTCATCTAAAAATAATA-TTCTAA 10479260 Score = 37.4 bits (40), Expect = 7.7 Identities = 36/45 (80%), Gaps = 1/45 (2%) Strand=Plus/Minus Query 158 tctCACCGTATCCCAATTCAACTCTCATTAAAATAATATTTCTAA 202 ||||| | |||| ||| ||||||| | ||||||||| |||||| Sbjct 10661377 TCTCAACTTATCTCAACTCAACTCATCTAAAAATAATA-TTCTAA 10661334 Score = 37.4 bits (40), Expect = 7.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1125 TCTCTTGTTGAATTTGGTCA 1144 |||||||||||||||||||| Sbjct 14951906 TCTCTTGTTGAATTTGGTCA 14951887 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGA 1103 |||| ||||||| |||||||||||| Sbjct 33490925 AAGAAGAGGAAGAGGAAGAAGAAGA 33490949 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1310 ACTTCAAACCACTCATATTCAGTAGCAT 1337 ||||||| || ||||| ||||||||||| Sbjct 38078556 ACTTCAACCCCCTCATTTTCAGTAGCAT 38078529 Score = 37.4 bits (40), Expect = 7.7 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Plus Query 1174 ATCATTGTCCCTACA-GCAGATGAC 1197 ||||||||||||||| ||||||||| Sbjct 42538337 ATCATTGTCCCTACATGCAGATGAC 42538361 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 42.8 bits (46), Expect = 0.18 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1370 TAGCTTTTGACTTCAATTCAATA 1392 ||||||||||||||||||||||| Sbjct 3735723 TAGCTTTTGACTTCAATTCAATA 3735701 Score = 39.2 bits (42), Expect = 2.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGAT 1104 |||||||||||| |||| |||||||| Sbjct 5175218 AAGATGAGGAAGAGGAAAAAGAAGAT 5175193 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2021 TCTTCTTGTTTTGTCTCGGTCTC 2043 ||||||||||||||||| ||||| Sbjct 846185 TCTTCTTGTTTTGTCTCTGTCTC 846207 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGA 1103 |||| |||| ||||||||||||||| Sbjct 11965794 AAGAAGAGGCAGGGGAAGAAGAAGA 11965770 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 2223 AGAAGTTCTTGAAGGTGTC-AATCTAT 2248 ||||||||| ||||||||| ||||||| Sbjct 30423529 AGAAGTTCTAGAAGGTGTCAAATCTAT 30423503 Score = 37.4 bits (40), Expect = 7.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 519 AGATTTCTCAAGGATGCTTGATAATCAGAT 548 |||||| |||||||||||| | ||||| || Sbjct 31459401 AGATTTGTCAAGGATGCTTCAAAATCATAT 31459430 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 42.8 bits (46), Expect = 0.18 Identities = 28/31 (90%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 278 CTTTCTCTCTGAGAACTTTAGAGCTGGATTG 308 |||||| |||| ||| ||||||||||||||| Sbjct 532193 CTTTCTTTCTGTGAATTTTAGAGCTGGATTG 532223 Score = 41.0 bits (44), Expect = 0.63 Identities = 29/32 (91%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 2420 TCATTTGTGTTTTGTCCATCGTAG-CTACTTG 2450 ||||||||||||||||||||| || | ||||| Sbjct 18945079 TCATTTGTGTTTTGTCCATCGCAGACAACTTG 18945110 Score = 39.2 bits (42), Expect = 2.2 Identities = 32/38 (84%), Gaps = 1/38 (3%) Strand=Plus/Minus Query 166 TATCCCAATTCAACTCTCATTAAAATAATATTTCTAAT 203 ||||| |||| || ||| || |||||||||||| |||| Sbjct 3830601 TATCCAAATTTAA-TCTTATAAAAATAATATTTATAAT 3830565 Score = 39.2 bits (42), Expect = 2.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 2004 AACGAGCTCTGTTGCGATCTTCTTGTTTTGT 2034 || ||||| |||||||| | ||||||||||| Sbjct 4049361 AAGGAGCTGTGTTGCGAACATCTTGTTTTGT 4049331 Score = 39.2 bits (42), Expect = 2.2 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGATGG 1106 |||| ||||||||||| ||||||||||| Sbjct 19849446 AAGA-GAGGAAGGGGAGGAAGAAGATGG 19849420 Score = 39.2 bits (42), Expect = 2.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1082 ATGAGGAAGGGGAAGAAGAAG 1102 ||||||||||||||||||||| Sbjct 23314859 ATGAGGAAGGGGAAGAAGAAG 23314839 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1004 TAACGCGGTCAACAAACTTTCTACA 1028 |||||||| ||| |||||||||||| Sbjct 977651 TAACGCGGACAAAAAACTTTCTACA 977675 Score = 37.4 bits (40), Expect = 7.7 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 598 AGGCTACAGACACTAAGGGGATCACACGATGCTCTCC 634 ||| ||||||||||| |||| ||||||| |||||| Sbjct 17198658 AGGATACAGACACTATGGGGCAGACACGAT-CTCTCC 17198623 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGA 1103 |||| ||||||| |||||||||||| Sbjct 24416289 AAGAAGAGGAAGAGGAAGAAGAAGA 24416313 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 41.0 bits (44), Expect = 0.63 Identities = 55/74 (74%), Gaps = 7/74 (9%) Strand=Plus/Plus Query 2442 AGCTACTTGTTTTACTTATAACTCCTT--GTATTAGTACTCTTGTTACAAATTTTACCCC 2499 ||||||||||||||||||| ||| | ||||||| || ||||| || ||| | Sbjct 1142065 AGCTACTTGTTTTACTTATCCTTCCATCATTATTAGT--TCATGTTATAATCTTT---TC 1142119 Query 2500 ATAATAAATCAAAT 2513 | ||||||| |||| Sbjct 1142120 AAAATAAATGAAAT 1142133 Score = 37.4 bits (40), Expect = 7.7 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1076 CACAA-GATGAGGAAGGGGAAGAAGAAGATGG 1106 ||||| ||||| |||| |||||||||||||| Sbjct 9833201 CACAACGATGACGAAGAAGAAGAAGAAGATGG 9833232 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 694 CAAGATCTTCTCAAGCTTTTGTT 716 ||||||||||||||| ||||||| Sbjct 13797778 CAAGATCTTCTCAAGTTTTTGTT 13797800 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1108 AGATATCACTTCATGTCTCTCTTGTTGA 1135 ||| |||| ||| ||||||||||||||| Sbjct 15008696 AGAAATCATTTCGTGTCTCTCTTGTTGA 15008723 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 186 TAAAATAATATTTCTAATGTATC 208 ||||||||||| ||||||||||| Sbjct 17190091 TAAAATAATATATCTAATGTATC 17190069 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 41.0 bits (44), Expect = 0.63 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 434 TCAATTACAAATTGATGAAGAAGAAAG 460 ||||||||||| ||| ||||||||||| Sbjct 11527100 TCAATTACAAAGTGAGGAAGAAGAAAG 11527074 Score = 41.0 bits (44), Expect = 0.63 Identities = 33/40 (83%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 263 ATCTGGGCTACCTCTCTTTCTCTCTGAGAACTTTAGAGCT 302 ||||| || |||||| ||||||||||| ||||| |||| Sbjct 15868383 ATCTGAACTCTCTCTCTCTCTCTCTGAGATCTTTATAGCT 15868344 Score = 39.2 bits (42), Expect = 2.2 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGATGGGAGAT 1111 ||||||||||||| |||| |||| |||| |||| Sbjct 12013386 AAGATGAGGAAGGTGAAGGAGAA-ATGGAAGAT 12013355 Score = 39.2 bits (42), Expect = 2.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 2148 TCTGAGCTTCCATGTCGTTGTTCCCT 2173 |||||||||||||| |||||| |||| Sbjct 29459454 TCTGAGCTTCCATGCCGTTGTCCCCT 29459479 Score = 37.4 bits (40), Expect = 7.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2484 TTACAAATTTTACCCCATAATAAATCAAAT 2513 ||||| |||||| ||||||||||| | ||| Sbjct 11928822 TTACAGATTTTAACCCATAATAAAACCAAT 11928851 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1100 AAGATGGGAGATATCACTTCATGTCTC 1126 |||||| || ||||||||||||||||| Sbjct 12682717 AAGATGAGA-ATATCACTTCATGTCTC 12682742 Score = 37.4 bits (40), Expect = 7.7 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 348 AACGACGAAGATAAGAGTGTAGAAGATGGTAG 379 ||| | ||||||||||||||| |||||| ||| Sbjct 21500590 AACAATGAAGATAAGAGTGTA-AAGATGATAG 21500620 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 41.0 bits (44), Expect = 0.63 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGATGGGAGATAT 1113 |||| || |||| |||||||||||||| |||||| Sbjct 4459799 AAGAAGAAGAAGAAGAAGAAGAAGATGGTAGATAT 4459765 Score = 41.0 bits (44), Expect = 0.63 Identities = 28/31 (90%), Gaps = 2/31 (6%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAG--ATGGG 1107 |||||||||||| ||||||||||| ||||| Sbjct 6538752 AAGATGAGGAAGAGGAAGAAGAAGTCATGGG 6538722 Score = 37.4 bits (40), Expect = 7.7 Identities = 30/35 (86%), Gaps = 1/35 (3%) Strand=Plus/Minus Query 2460 TAACTCCTTGTATTAGTACTCTTGTTACAAATTTT 2494 |||||||||||| || |||| ||||| ||||||| Sbjct 12597698 TAACTCCTTGTAATATTACTTATGTTA-AAATTTT 12597665 >Query1 on lcl|JrScfU0007| Query1 on lcl|JrScfU0007 Length=67448 Score = 39.2 bits (42), Expect = 2.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 442 AAATTGATGAAGAAGAAAGTGAAGCAATATA 472 ||||||||||||||||| ||||| ||||| Sbjct 65006 AAATTGATGAAGAAGAAGTTGAAGAGATATA 64976 >Query1 on lcl|JrScfU0006| Query1 on lcl|JrScfU0006 Length=71448 Score = 39.2 bits (42), Expect = 2.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 442 AAATTGATGAAGAAGAAAGTGAAGCAATATA 472 ||||||||||||||||| ||||| ||||| Sbjct 17426 AAATTGATGAAGAAGAAGTTGAAGAGATATA 17456 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 39.2 bits (42), Expect = 2.2 Identities = 25/26 (96%), Gaps = 1/26 (4%) Strand=Plus/Plus Query 1078 CAAG-ATGAGGAAGGGGAAGAAGAAG 1102 |||| ||||||||||||||||||||| Sbjct 25613452 CAAGTATGAGGAAGGGGAAGAAGAAG 25613477 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 2.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1080 AGATGAGGAAGGGGAAGAAGAAGATG 1105 |||||||| ||| ||||||||||||| Sbjct 8809675 AGATGAGGGAGGTGAAGAAGAAGATG 8809650 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1108 AGATATCACTTCATGTCTCTCTTGTTGA 1135 ||| |||| ||| ||||||||||||||| Sbjct 17016207 AGAAATCATTTCGTGTCTCTCTTGTTGA 17016180 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 2.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 175 TCAACTCTCATTAAAATAATATTTCT 200 |||||| ||||| ||||||||||||| Sbjct 10124911 TCAACTGTCATTCAAATAATATTTCT 10124936 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 748 AAGATACTGAAGAAATTTGACAA 770 |||||||| |||||||||||||| Sbjct 22005684 AAGATACTCAAGAAATTTGACAA 22005706 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 447 GATGAAGAAGAAAGTGAAGCAATAT 471 |||||||||||||| ||||||||| Sbjct 4641015 GATGAAGAAGAAAGAAAAGCAATAT 4641039 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 434 TCAATTACAAATTGATGAA-GAAGAAA 459 |||||||||||||||| || ||||||| Sbjct 10877959 TCAATTACAAATTGATTAATGAAGAAA 10877933 Score = 37.4 bits (40), Expect = 7.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2500 ATAATAAATCAAATCTATGCAATTACCCTA 2529 ||||||||||||| ||||||||| |||| Sbjct 17803419 ATAATAAATCAAACTAATGCAATTATCCTA 17803448 Score = 37.4 bits (40), Expect = 7.7 Identities = 38/50 (76%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 1054 ATGCAAGAAGAGTTACCAAGTCCACAAGATGAGGAAGGGGAAGAAGAAGA 1103 || ||||| ||| ||| ||| | |||| || |||| ||||||||||| Sbjct 18574042 ATACAAGAGGAGAGACCTAGTTAAGAAGAAGAAGAAGAAGAAGAAGAAGA 18573993 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 442 AAATTGATGAAGAAGAAAGTGAA 464 |||||||||||||||||| |||| Sbjct 26808492 AAATTGATGAAGAAGAAATTGAA 26808470 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 442 AAATTGATGAAGAAGAAAGTGAA 464 |||||||||||||||||| |||| Sbjct 26856828 AAATTGATGAAGAAGAAATTGAA 26856806 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 442 AAATTGATGAAGAAGAAAGTGAA 464 |||||||||||||||||| |||| Sbjct 27172894 AAATTGATGAAGAAGAAATTGAA 27172872 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGA 1103 |||| ||||||| |||||||||||| Sbjct 8234853 AAGAAGAGGAAGAGGAAGAAGAAGA 8234829 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1108 AGATATCACTTCATGTCTCTCTTGTTGA 1135 ||| |||| ||| ||||||||||||||| Sbjct 20466042 AGAAATCATTTCGTGTCTCTCTTGTTGA 20466015 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 37.4 bits (40), Expect = 7.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 933 GATTTATGATCAACCAGTTCTTC 955 |||||||||||| |||||||||| Sbjct 3185442 GATTTATGATCAGCCAGTTCTTC 3185464 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1817 ATGAATGTGATGGAAGCGAAGAAGC 1841 ||||||||||||| || |||||||| Sbjct 4471484 ATGAATGTGATGGCAGGGAAGAAGC 4471508 Score = 37.4 bits (40), Expect = 7.7 Identities = 31/37 (84%), Gaps = 2/37 (5%) Strand=Plus/Plus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGATGGGA--GATAT 1113 |||| || |||| |||||||||||||||| ||||| Sbjct 17146957 AAGAAGAAGAAGAAGAAGAAGAAGATGGGAAGGATAT 17146993 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGA 1103 |||||||||||| ||||||||||| Sbjct 1028225 AAGATGAGGAAGAAGAAGAAGAAGA 1028201 Score = 37.4 bits (40), Expect = 7.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1079 AAGATGAGGAAGGGGAAGAAGAAGA 1103 ||||||| ||||| ||||||||||| Sbjct 30768390 AAGATGAAGAAGGAGAAGAAGAAGA 30768414 Score = 37.4 bits (40), Expect = 7.7 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 234 AAAAATTTACAATTTTGCGACATAGAA 260 |||||||||||| |||| ||||||||| Sbjct 32872639 AAAAATTTACAA-TTTGTGACATAGAA 32872614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1348971383139 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2