BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1401 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr7S 168 1e-39 lcl|Jr4D 159 5e-37 lcl|Jr3S 147 3e-33 lcl|Jr3D 132 7e-29 lcl|Jr2D 96.9 5e-18 lcl|Jr4S 57.2 4e-06 lcl|Jr1D 46.4 0.008 lcl|Jr5D 44.6 0.028 lcl|Jr6D 39.2 1.2 lcl|Jr5S 39.2 1.2 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 168 bits (186), Expect = 1e-39 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 853 GGAAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAA 912 || |||||||| |||||||||| |||||| | | ||||| | || || || ||| Sbjct 19374186 GGTAAATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAAAGTAAATCGAGCT 19374245 Query 913 GAGACTCCATGGTTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCAT 972 || ||||||||| | || || || ||||||| || ||||| ||||| || ||||| ||| Sbjct 19374246 GAAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 19374305 Query 973 TACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTT 1032 || |||||||| || ||||||||||| | ||||| || ||| | ||| | ||||| ||| Sbjct 19374306 TATATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 19374365 Query 1033 GATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAG 1068 || | ||||| |||||||||| |||||||||||| Sbjct 19374366 GACATTGTTTTTGCTGGTCATGTTCATGCCTATGAG 19374401 Score = 93.3 bits (102), Expect = 6e-17 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 487 GGTGATCTTGGACAGACTTATGCTTCTAATGAGACATTGTATCATTACATGTCAAACCCT 546 |||||| | |||||||| | |||||||||||| | | ||||| || | ||||| Sbjct 19373446 GGTGATTTGGGACAGACAAGTAATTCTAATGAGACGCTTGAGCATTATATTGCCAACCCG 19373505 Query 547 AAAGGCCAAGCTGTTCTCTTTGCTGGAGACTTGTCATATGCAGACGACCACCCGAATCAT 606 | | || || | | |||| || || | || ||||| || || ||||| || ||| Sbjct 19373506 ACTGCGCAGACTATGTTGTTTGTAGGTGATCTTTCTTATGCTGATGATCACCCAAACCAT 19373565 Query 607 GACCA-GAGAAAGTGGGATACTTGGGGAAGATTTATGGAGCCTTGTGCTGCTTACCAGCC 665 ||| | |||| | ||||| || ||||| | ||||| ||| ||||||| || ||||| Sbjct 19373566 GACAATGAGAGA-TGGGACACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCC 19373624 Query 666 CTTCATCTTTGCTGCCGGGAATCATGAAATTGATTTTGTTCCA 708 | || | |||| || ||||||||| |||||| || |||| Sbjct 19373625 ATGGATTTGGACTGCTGGCAATCATGAACTTGATTATGCTCCA 19373667 Score = 78.8 bits (86), Expect = 1e-12 Identities = 95/128 (74%), Gaps = 6/128 (5%) Strand=Plus/Plus Query 730 TTCAAGCCCTACACTCACCGTTACCCTAACG---CCTACAAAGCTTCACAAAGCACTTCT 786 ||||||||||| | || | |||| ||| |||||| | | || || || || || Sbjct 19373969 TTCAAGCCCTATATGAACAGATACC---ACGTGCCCTACAGATCATCGCAGAGTACATCC 19374025 Query 787 CCTCTTTGGTACTCAGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCG 846 || |||||||| || | | ||||| ||||| |||||||| ||||||||||||||||| Sbjct 19374026 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 19374085 Query 847 GCCTACGG 854 || || || Sbjct 19374086 GCATATGG 19374093 Score = 60.8 bits (66), Expect = 4e-07 Identities = 48/58 (83%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 432 CTTCACTACTCCTCCAAAGATCGGACCCGATGTTCCATACACATTCGGCATCATTGGT 489 ||||| |||||||| || | || || ||||||||||||||||| ||||| |||||| Sbjct 19373291 CTTCAGAACTCCTCCCAAAGTGGGGCCAGATGTTCCATACACATTTGGCATTATTGGT 19373348 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 159 bits (176), Expect = 5e-37 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 853 GGAAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAA 912 || |||||||| |||||||||| |||||| | || ||||| | || || || ||| Sbjct 7757932 GGTAAATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCT 7757991 Query 913 GAGACTCCATGGTTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCAT 972 || ||||||||| | || || || ||||||| || ||||| ||||| || ||||| ||| Sbjct 7757992 GAAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 7758051 Query 973 TACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTT 1032 | |||||||| || ||||||||||| ||||| || ||| | ||| | ||||| ||| Sbjct 7758052 TTTATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 7758111 Query 1033 GATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGAGATCTG 1075 || | || || | |||||||| |||||||||||| | |||| Sbjct 7758112 GACATTGTGTTAGCCGGTCATGTTCATGCCTATGAGCGTTCTG 7758154 Score = 114 bits (126), Expect = 2e-23 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 487 GGTGATCTTGGACAGACTTATGCTTCTAATGAGACATTGTATCATTACATGTCAAACCCT 546 || ||| | |||||||| | |||||||||||| | | ||||| || || ||||| Sbjct 7756172 GGGGATTTGGGACAGACAATTAATTCTAATGAGACGCTTGAGCATTATATTTCCAACCCG 7756231 Query 547 AAAGGCCAAGCTGTTCTCTTTGCTGGAGACTTGTCATATGCAGACGACCACCCGAATCAT 606 | | ||| || | | ||||| || || | || |||||||| || ||||| ||||| Sbjct 7756232 ACTGCGCAAACTATGTTGTTTGCGGGTGATCTTTCTTATGCAGATGATCACCCATATCAT 7756291 Query 607 GACCA-GAGAAAGTGGGATACTTGGGGAAGATTTATGGAGCCTTGTGCTGCTTACCAGCC 665 ||| | |||| | ||||| || ||||| | ||||| ||| ||||||| || ||||| Sbjct 7756292 GACAATGAGAGA-TGGGACACATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCC 7756350 Query 666 CTTCATCTTTGCTGCCGGGAATCATGAAATTGATTTTGTTCCAAACATTG 715 | || | |||| || ||||||||| ||||||||| |||| | |||| Sbjct 7756351 ATGGATTTGGACTGCTGGCAATCATGAACTTGATTTTGCTCCAGAAATTG 7756400 Score = 89.7 bits (98), Expect = 8e-16 Identities = 155/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 487 GGTGATCTTGGACAGACTTATGCTTCTAATGAGACATTGTATCATTACATGTCAAACC-- 544 ||||||||||| || ||| ||| ||| ||| |||| | ||||| | ||||| Sbjct 28096612 GGTGATCTTGGTCAAACTCATGATTCAAATAGGACACTCACCCATTATGAATTAAACCCA 28096671 Query 545 -CTAAAGGCCAAGCTGTTCTCTTTGCTGGAGACTTGTCATATGCAGACGACCACCCGAAT 603 | |||||||| || | || | ||||||| | || |||||||| ||| | || Sbjct 28096672 ACAAAAGGCCAGATGGTGTTGTTCGTTGGAGACCTCTCTTATGCAGATGACTATCCATTG 28096731 Query 604 CATGACCAGAGAAAGTGGGATACTTGGGGAAGATTTATGGAGCCTTGTGCTGCTTACCAG 663 |||||| | | | ||||||||| |||||||| || || ||| ||||||||| || Sbjct 28096732 CATGACAACAACAGGTGGGATACATGGGGAAGGTTCATAGAGAGAAATGCTGCTTATCAA 28096791 Query 664 CCCTTCATCTTTGCTGCCGGGAATCATGAAATTGATTTTGTTCCA 708 || | | | |||| || |||||||| || |||| || |||| Sbjct 28096792 CCTTGGGTATGGACTGCAGGCAATCATGAGATCGATTATGCTCCA 28096836 Score = 87.8 bits (96), Expect = 3e-15 Identities = 97/128 (76%), Gaps = 6/128 (5%) Strand=Plus/Plus Query 730 TTCAAGCCCTACACTCACCGTTACCCTAACG---CCTACAAAGCTTCACAAAGCACTTCT 786 ||||||||||| | || | |||| ||| |||||| | | || |||||||| || Sbjct 7757683 TTCAAGCCCTATATGAACAGATACC---ACGTGCCCTACAGATCATCGCAAAGCACATCC 7757739 Query 787 CCTCTTTGGTACTCAGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCG 846 || |||||||| || | | ||||| ||||| |||||||| ||||||||||||||||| Sbjct 7757740 CCACTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 7757799 Query 847 GCCTACGG 854 || || || Sbjct 7757800 GCATATGG 7757807 Score = 80.6 bits (88), Expect = 4e-13 Identities = 155/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 853 GGAAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAA 912 || |||||||| || ||||||| ||||||| | || || | || ||||| Sbjct 28097729 GGGAAATACACTCCACAATACAAATGGCTTGTAAAGGAACTGCCCAGAGTAAACAGGACT 28097788 Query 913 GAGACTCCATGGTTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCAT 972 ||||| || ||| | || || || | || | || || | ||| || ||||| Sbjct 28097789 GAGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCAT 28097848 Query 973 TACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTT 1032 || |||||||| || | ||||||||| || | |||| ||| | || | || ||| Sbjct 28097849 TATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTT 28097908 Query 1033 GATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGAGATCTGAACGTA 1081 ||| | || || |||||||||| ||||||||||| |||||| | ||| Sbjct 28097909 GATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATCTGTAAGTA 28097957 Score = 57.2 bits (62), Expect = 4e-06 Identities = 40/46 (87%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 1140 TGCTCCTATTTACATTACTATCGGAGATGGAGGAAACATTGAAGGA 1185 ||||||| ||||||| || || |||||||||||||| |||||||| Sbjct 28098807 TGCTCCTGTTTACATAACCATTGGAGATGGAGGAAATCTTGAAGGA 28098852 Score = 53.6 bits (58), Expect = 5e-05 Identities = 80/114 (70%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 379 GATACCAAGTACATCTATGAGGTTGGTACCGATAAATCCGTTAGACAATTCTCCTTCACT 438 || ||||| ||| ||||||||| || | | || || |||| |||| || | Sbjct 28096173 GACACCAAATACTACTATGAGGTCGGGATTGGGAATACCACACGACAGTTCTGGTTTAGA 28096232 Query 439 ACTCCTCCAAAGATCGGACCCGATGTTCCATACACATTCGGCATCATTGGTGAT 492 |||||||||| | || || ||||||||||| ||||| ||| | || ||| || Sbjct 28096233 ACTCCTCCAAGTGTTGGCCCTGATGTTCCATATACATTTGGCCTAATAGGTAAT 28096286 Score = 50.0 bits (54), Expect = 7e-04 Identities = 45/57 (79%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 433 TTCACTACTCCTCCAAAGATCGGACCCGATGTTCCATACACATTCGGCATCATTGGT 489 |||| |||||||| || | || || ||||||||||||||||| || || || ||| Sbjct 7755997 TTCAGAACTCCTCCCAAAGTAGGGCCAGATGTTCCATACACATTTGGTATTATGGGT 7756053 Score = 48.2 bits (52), Expect = 0.002 Identities = 47/61 (77%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 155 AGGTTCATCTGACTCAAGGAGACCATGATGGACGTGGCATGATTGTCTCGTGGGTCACAC 214 |||| ||| | ||||||||||| || || ||| || |||||||||| ||||| || | Sbjct 28095876 AGGTGCATATAACTCAAGGAGATCACGAGGGAAAGGGTGTGATTGTCTCTTGGGTTACTC 28095935 Query 215 C 215 | Sbjct 28095936 C 28095936 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 147 bits (162), Expect = 3e-33 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 853 GGAAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAA 912 || ||||| || |||||||||| ||||| || | || ||| ||| || || || | Sbjct 24737156 GGTAAATATACACCTCAATACACATGGCTCGAAGAGGAACTACCGAAAGTTAATAGGGCC 24737215 Query 913 GAGACTCCATGGTTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCAT 972 ||||| || ||| ||||||| | || || || ||||| || || ||||||||||| Sbjct 24737216 GAGACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCAT 24737275 Query 973 TACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTT 1032 || ||||| || || | ||||||||| ||||||||| | ||| | || || || ||| Sbjct 24737276 TATATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTATAAAGTT 24737335 Query 1033 GATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGAGATCTGAACGTATC 1083 ||| |||| || |||||||||| ||||| |||||| |||||| | || || Sbjct 24737336 GATGTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATCTGTAAGTCTC 24737386 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 730 TTCAAGCCCTACACTCACCGTTACCCTAACGCCTACAAAGCTTCACAAAGCACTTCTCCT 789 || ||||| |||||||||||||| | | | || ||||||||| | || ||| |||| Sbjct 24736378 TTTAAGCCTTACACTCACCGTTATCATGTGCCTTATAAAGCTTCAAAGAGTACTGCTCCC 24736437 Query 790 CTTTGGTACTCAGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCGGCC 849 ||||||| ||| | | | ||||| ||| ||||||| || | ||||| || ||||| Sbjct 24736438 TTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGTGTTGTCTTCGTATTCGGCG 24736497 Query 850 TACGG 854 ||||| Sbjct 24736498 TACGG 24736502 Score = 39.2 bits (42), Expect = 1.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1171 GGAAACATTGAAGGAATTGCA 1191 ||||||||||||||||||||| Sbjct 825374 GGAAACATTGAAGGAATTGCA 825394 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 132 bits (146), Expect = 7e-29 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 853 GGAAAATACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAA 912 || |||||||| ||||||||| |||||||| || || | || || ||||| Sbjct 5532710 GGTAAATACACCCCTCAATACCAATGGCTTGAACAGGAATTGCCAAAAGTTAACAGGACT 5532651 Query 913 GAGACTCCATGGTTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCAT 972 ||||| || ||||||||||| || | || || || ||||| || || | ||||||||| Sbjct 5532650 GAGACACCTTGGTTGATTGTTCTTATGCATTCCCCCTGGTATAATAGCTACAACTATCAT 5532591 Query 973 TACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTT 1032 || ||||| || || | ||||||||| |||| |||| ||| | || || ||| ||| Sbjct 5532590 TATATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTTGTGAAGTACAAAGTT 5532531 Query 1033 GATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGAGATC 1073 ||| |||| || | |||||||| ||||| ||||| |||| Sbjct 5532530 GATGTGGTATTTGCAGGTCATGTTCATGCTTATGAACGATC 5532490 Score = 78.8 bits (86), Expect = 1e-12 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 730 TTCAAGCCCTACACTCACCGTTACCCTAACGCCTACAAAGCTTCACAAAGCACTTCTCCT 789 || ||||| |||||| | ||||||| | | |||||||||||| | || ||| |||| Sbjct 5532991 TTTAAGCCTTACACTAATCGTTACCATGTGCCTTACAAAGCTTCAAACAGTACTGCTCCC 5532932 Query 790 CTTTGGTACTCAGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCGGCC 849 ||||||| ||| | | | ||||| ||| ||||||| ||| | |||| ||||| || Sbjct 5532931 TTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGTCTTGGCTTCATACTCAGCA 5532872 Query 850 TACGGAAA 857 || || || Sbjct 5532871 TATGGTAA 5532864 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1029 GGTTGATTTGGTTTTGTCTGGTCAT 1053 ||||||||||||||||| | ||||| Sbjct 26401355 GGTTGATTTGGTTTTGTATTGTCAT 26401331 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 96.9 bits (106), Expect = 5e-18 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 859 TACACGCCTCAATACATTTGGCTTGAGCAAGAGCTAAAGAATGTGAACAGAGAAGAGACT 918 ||||| ||||||| || |||||| | ||||| ||| | || |||| || ||||| Sbjct 40280853 TACACCCCTCAATGGATGTGGCTTAAAGAAGAGTTAACAAGGGTTGACAGGGAGAAGACT 40280794 Query 919 CCATGGTTGATTGTCATTGTTCACTCTCCGTGGTACAACAGTAATAACTATCATTACATG 978 || ||| | ||||| || | || || ||||| || ||| | ||| |||||| Sbjct 40280793 CCTTGGCTCATTGTTCTTATGCATGTGCCAATCTACAATAGCAATGAAGCTCACTACATG 40280734 Query 979 GAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGTGGCTCGTTAACAGCAAGGTTGATTTG 1038 || || || || ||| ||| | | |||||| ||| || | | ||| |||||| | Sbjct 40280733 GAGGGGGAAAGTATGCGAGCTGTATTTGAGAGTTGGTTCATCCATTACAAAGTTGATGTA 40280674 Query 1039 GTTTTGTCTGGTCATGTCCATGCCTATGAGAGATCTGAACG 1079 || || |||| ||||||||||| ||||| ||||||| ||| Sbjct 40280673 GTCTTTGCTGGCCATGTCCATGCTTATGAAAGATCTGTACG 40280633 Score = 51.8 bits (56), Expect = 2e-04 Identities = 42/51 (82%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 786 TCCTCTTTGGTACTCAGTGAGACGTGCTTCTGCTCACATCATCGTCCTCTC 836 ||||||||||||||| | || ||||| |||||||| || ||||| || || Sbjct 40281699 TCCTCTTTGGTACTCCATCAGGCGTGCATCTGCTCATATAATCGTGCTATC 40281649 Score = 41.0 bits (44), Expect = 0.34 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 523 TTGTATCATTACATGTCAAACCCTAAA 549 |||||| || ||||||||||||||||| Sbjct 30987160 TTGTATGATGACATGTCAAACCCTAAA 30987134 Score = 37.4 bits (40), Expect = 4.2 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1127 TGAAAGATCCTAATGCTCCTATTTACAT 1154 ||||||||||||||| |||||| || || Sbjct 17282409 TGAAAGATCCTAATGATCCTATATATAT 17282382 Score = 37.4 bits (40), Expect = 4.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 544 CCTAAAGGCCAAGCTGTTCTCTTTGCTGGA 573 ||| || ||||||||||||| |||||||| Sbjct 40297688 CCTCAAATCCAAGCTGTTCTCGTTGCTGGA 40297717 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 57.2 bits (62), Expect = 4e-06 Identities = 88/124 (71%), Gaps = 9/124 (7%) Strand=Plus/Plus Query 956 ACAGTAATAACTAT---CATTACATGGAAGGTGAGAGCATGAGAGTTATGTTTGAGTCGT 1012 |||||| ||||| || || ||||||||||| || ||| ||| | | |||||| | Sbjct 1043489 ACAGTAGTAACTCAGCCCACTATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGAT 1043548 Query 1013 GGCTCGT---TAACAGCAAGGTTGATTTGGTTTTGTCTGGTCATGTCCATGCCTATGAGA 1069 || | || | | || |||||||| || || |||| || || ||||||||||| | Sbjct 1043549 GGTTTGTCTGTTATAG---AGTTGATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAA 1043605 Query 1070 GATC 1073 |||| Sbjct 1043606 GATC 1043609 Score = 46.4 bits (50), Expect = 0.008 Identities = 58/80 (73%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 619 TGGGATACTTGGGGAAGATTTATGGAGCCTTGTGCTGCTTACCAGCCCTTCATCTTTGCT 678 |||||| | ||||| | ||||| |||| || |||| || ||||| | || | | Sbjct 1042180 TGGGATGCATGGGGCCGTTTTATTGAGCGAAGTACTGCATATCAGCCATGGATTTGGTCA 1042239 Query 679 GCCGGGAATCATGAAATTGA 698 || |||||||||||||| || Sbjct 1042240 GCTGGGAATCATGAAATAGA 1042259 Score = 37.4 bits (40), Expect = 4.2 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1141 GCTCCTATTTACATTACTATCGGAGATGGAGGAAA 1175 ||||| | ||||| ||| | |||||||||||||| Sbjct 1044454 GCTCCAGTGTACATAACTGTTGGAGATGGAGGAAA 1044488 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 46.4 bits (50), Expect = 0.008 Identities = 69/96 (72%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 905 ACAGAGAAGAGACTCCATGGTTGATTG--TCATTGTTCACTCTCCGTGGTACAACAGTAA 962 ||||||||| ||||||||||||| | | ||| | ||| | || ||||||| || | Sbjct 20776414 ACAGAGAAGTGACTCCATGGTTGGTAGCTGCATGG--CACCCACCTTGGTACAGCACCTA 20776357 Query 963 TAACTATCATTACATGGAAGGTGAGAGCATGAGAGT 998 || ||||||| |||| ||| ||||||| || Sbjct 20776356 CAAGGCGCATTACAGAGAAGCAGAGTGCATGAGGGT 20776321 Score = 42.8 bits (46), Expect = 0.098 Identities = 28/31 (90%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 991 ATGAGAGTTATGTTTGAGTCGTGGCTCGTTA 1021 |||||||||||||||| |||||||| |||| Sbjct 20199314 ATGAGAGTTATGTTTGTGTCGTGGCATGTTA 20199284 Score = 41.0 bits (44), Expect = 0.34 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1029 GGTTGATTTGGTTTTGTCTGGTCAT 1053 ||||||||||||||||| ||||||| Sbjct 31513364 GGTTGATTTGGTTTTGTATGGTCAT 31513340 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 44.6 bits (48), Expect = 0.028 Identities = 33/39 (85%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 1029 GGTTGATTTGGTTTTGTCTGGTCATGTCCATGCCTATGA 1067 ||| ||||||||||| |||| ||||| ||||| ||||| Sbjct 1123459 GGTCGATTTGGTTTTTGCTGGACATGTTCATGCATATGA 1123421 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 1.2 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 1099 AACATCACCAATGGCTTGAGC-TCTCCTGTGAA 1130 ||||||||||||||||||| | ||||| |||| Sbjct 6418881 AACATCACCAATGGCTTGATCTTCTCCCATGAA 6418849 Score = 39.2 bits (42), Expect = 1.2 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 1099 AACATCACCAATGGCTTGAGC-TCTCCTGTGAA 1130 ||||||||||||||||||| | ||||| |||| Sbjct 6506104 AACATCACCAATGGCTTGATCTTCTCCCATGAA 6506072 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 39.2 bits (42), Expect = 1.2 Identities = 32/39 (82%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 671 TCTTTGCTGCCGGGAATCATGAAATTGATTTTGTTCCAA 709 |||||| || |||||| ||||||| ||||||||||| Sbjct 29004413 TCTTTGTTGATGGGAATTTTGAAATTTCTTTTGTTCCAA 29004451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732497442420 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2