BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1407 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr8D 80.6 4e-13 lcl|Jr3S 71.6 2e-10 lcl|Jr8S 57.2 4e-06 lcl|Jr6D 46.4 0.008 lcl|Jr6S 42.8 0.099 lcl|Jr4S 42.8 0.099 lcl|Jr2S 41.0 0.34 lcl|Jr1S 41.0 0.34 lcl|Jr1D 41.0 0.34 lcl|Jr7S 39.2 1.2 lcl|Jr7D 39.2 1.2 lcl|Jr5S 39.2 1.2 lcl|Jr3D 39.2 1.2 lcl|JrScfU0001 37.4 4.2 lcl|Jr5D 37.4 4.2 lcl|Jr4D 37.4 4.2 lcl|Jr2D 37.4 4.2 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 80.6 bits (88), Expect = 4e-13 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 370 AGATGGGAAAAATAGGGAAGGACTTAAATATTGATTTCCTCATTTCGACTGGAGATAACT 429 ||||||||| ||| ||| || | || | || ||||| | |||| |||||||| |||| Sbjct 30160117 AGATGGGAAGAATTGGGGAGAAGTTGAGCATAGATTTTGTAGTTTCTACTGGAGACAACT 30160058 Query 430 TTTATGATGATGGAATAATCAGTCCATATGATTCTCAATTTCAAGATTCGTTTACCAATA 489 ||||||| |||||| | | ||| | |||| || |||| | | || || |||| | Sbjct 30160057 TTTATGAGGATGGACTTACCAGCATAGATGACCCTGCATTTGAGAAGTCATTCGCCAAGA 30159998 Query 490 TTTACACAGCAACTAGCTTACAAAAACCATGGTACAA 526 | ||||| || | ||| | || || | ||||||||| Sbjct 30159997 TCTACACTGCTAAGAGCCTGCAGAAGCAATGGTACAA 30159961 Score = 68.0 bits (74), Expect = 2e-09 Identities = 85/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 636 GAGATTGTCGATATTTTCTTCGTGGATACAACACCGTTCGTAGATAGATATTTTGATGAA 695 || ||||| || |||||||| | || || || || ||||| |||| || ||| ||| Sbjct 30159659 GAAATTGTGGAGTTTTTCTTCATCGACACGACTCCTTTCGTTGATAAGTACTTTC-TGAG 30159601 Query 696 -CCAAAGGACCATGTATATGATTGGAGAGGCGTATTACCGAGAAATAAATACCT 748 |||||| ||||| |||||||||||||| || | ||||| || ||||||| Sbjct 30159600 GCCAAAGCACCATACTTATGATTGGAGAGGTGTGCTTCCGAGGAAAGAATACCT 30159547 Score = 68.0 bits (74), Expect = 2e-09 Identities = 85/117 (73%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 412 TTTCGACTGGAGATAACTTTTATGATGATGGAATAATCAGTCCATATGATTCTCAATTTC 471 |||| || |||||||| || |||||||||||| | | ||| | | ||| | |||| Sbjct 30162998 TTTCAACAGGAGATAATTTCTATGATGATGGACTGACTAGTGAACAGGATACAGCATTTG 30162939 Query 472 AAGATTCGTTTACCAATATTTACACAGCAACTAGCTTACAAAAACCATGGTACAATG 528 | || || |||||||| | |||||||| | ||| | || |||| ||||||| || Sbjct 30162938 AGGAATCATTTACCAAAGTATACACAGCCAACAGCCTGCAGAAACAGTGGTACAGTG 30162882 Score = 66.2 bits (72), Expect = 9e-09 Identities = 90/123 (73%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 250 ATTCAACGGCAGAGCTACCGCGGTTCGTCCAACC-ACCAGAACCCGATGGTTCACTCAGT 308 ||||| | |||||||| | |||| | || || |||| || ||||| || || || Sbjct 30163367 ATTCATCTGCAGAGCTTCAAAGGTTTGAGCACCCCACCAAAAGT-GATGGGTCGCTTAGC 30163309 Query 309 TTTCTCGTTGTCGGCGACTGGGGAAGAAGAGGTTCTTATAATCAGTCCCAAGTAGCTCTT 368 ||| | || || || ||||||||||||||||| ||| || || || ||||| |||| | Sbjct 30163308 TTTTTGGTCGTTGGGGACTGGGGAAGAAGAGGGGCTTTCAACCAATCTCAAGTTGCTCAT 30163249 Query 369 CAG 371 ||| Sbjct 30163248 CAG 30163246 Score = 64.4 bits (70), Expect = 3e-08 Identities = 80/110 (73%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 966 ATACAATTTATGACAAGTGGAGGTGGCTCCAAGGCGTGGAAAGGAGATGTGAATGATTGG 1025 ||||||||| | || ||||||| ||| |||||||| |||| |||||| | || | | Sbjct 30161819 ATACAATTTCTAACTAGTGGAGCTGGGTCCAAGGCATGGAGAGGAGACATTAAAGGACTG 30161760 Query 1026 AACCCACAAGAGATGAGGTTTTACTATGATGGACAAGGATTCATGTCGGT 1075 || | | ||| ||| | |||||||||||| || |||||||| || Sbjct 30161759 AATAGAGGTGGCCTGAAGTTCTTCTATGATGGACAGGGTTTCATGTCTGT 30161710 Score = 55.4 bits (60), Expect = 2e-05 Identities = 75/102 (74%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 966 ATACAATTTATGACAAGTGGAGGTGGCTCCAAGGCGTGGAAAGGAGATGT-GAATGATTG 1024 || |||||| | || || ||||| || || ||||| |||||||| ||| | | |||| Sbjct 30159039 ATCCAATTTTTAACCAGCGGAGGAGGTTCAAAGGCATGGAAAGGTGATATAGGCAAATTG 30158980 Query 1025 GAACCCACAAGAGATGAGGTTTTACTATGATGGACAAGGATT 1066 | || | | ||| ||||||||||||||| |||||||| Sbjct 30158979 GG-CCAAGATTTATTGAAGTTTTACTATGATGGGCAAGGATT 30158939 Score = 55.4 bits (60), Expect = 2e-05 Identities = 38/43 (88%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 912 TATATAAACGGGCATGATCATTGCTTGGAGCACATAAGCAGCA 954 || ||||| |||||||| ||||||||||| ||||| ||||||| Sbjct 30159180 TACATAAATGGGCATGACCATTGCTTGGAACACATGAGCAGCA 30159138 Score = 50.0 bits (54), Expect = 7e-04 Identities = 60/82 (73%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 644 CGATATTTTCTTCGTGGATACAACACCGTTCGTAGATAGATATTTTGATGAACCAAAGGA 703 ||| ||| | || ||||| || || || || || || ||| ||| ||| ||||||| Sbjct 30162475 CGAGATTATATTTGTGGACACCACTCCTTTTGTCAATGCATACTTTACTGATACAAAGGA 30162416 Query 704 CCATGTATATGATTGGAGAGGC 725 |||| ||||||||||| ||| Sbjct 30162415 CCATACCTATGATTGGAGGGGC 30162394 Score = 46.4 bits (50), Expect = 0.008 Identities = 81/118 (69%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 254 AACGGCAGAGCTACCGCGGTTCGTCCAACCACCAGAACCCGATGGTTCACTCAGTTTTCT 313 ||| || ||||| | |||| ||| || || || |||| || || || || ||| | Sbjct 30160486 AACAGCTGAGCTTCAGCGGCTCGAACACCCGGTTAAAGCCGACGGCTCGCTTAGCTTTTT 30160427 Query 314 CGTTGTCGGCGACTGGGGAAGAAGAGGTTCTTATAATCAGTCCCAAGTAGCTCTTCAG 371 || | || |||||||||||||| || ||| ||||| || | || ||| |||| Sbjct 30160426 GGTGATTGGAGACTGGGGAAGAAGGGGACATTACAATCAATCTGATGTTGCTTATCAG 30160369 Score = 41.0 bits (44), Expect = 0.34 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1218 AATTATTTATATTAATTAGTCCATTGTTTATTATGTT 1254 |||||||||||| ||||| |||||||||||||| Sbjct 32334907 AATTATTTATATGGCTTAGTTGGTTGTTTATTATGTT 32334943 Score = 39.2 bits (42), Expect = 1.2 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 1272 AAACATTTTTTAATGTTG-TGTGATTATTTT 1301 ||||||||||||||| || ||||||| |||| Sbjct 22582229 AAACATTTTTTAATGATGTTGTGATTTTTTT 22582199 Score = 39.2 bits (42), Expect = 1.2 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 1272 AAACATTTTTTAATGTTG-TGTGATTATTTT 1301 ||||||||||||||| || ||||||| |||| Sbjct 22636675 AAACATTTTTTAATGATGTTGTGATTTTTTT 22636645 Score = 37.4 bits (40), Expect = 4.2 Identities = 46/59 (78%), Gaps = 3/59 (5%) Strand=Plus/Plus Query 1217 TAATTATTTA-TATTAATTAGTCCATTGTTTATTATGTTGATATTTCATG-TGAGTTAA 1273 |||||| ||| |||||||||| ||| ||||||| ||| || | | ||| | |||||| Sbjct 10955357 TAATTAGTTAATATTAATTAGAATATTATTTATTAAGTTAAT-TATAATGATAAGTTAA 10955414 Score = 37.4 bits (40), Expect = 4.2 Identities = 30/35 (86%), Gaps = 1/35 (3%) Strand=Plus/Minus Query 1268 AGTTAAACATTTTTTAATGTTG-TGTGATTATTTT 1301 ||||||| ||||||||||| || ||||| | |||| Sbjct 11221596 AGTTAAATATTTTTTAATGATGTTGTGAATTTTTT 11221562 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 17577113 TTATGTTGATATTTCATGTG 17577094 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1019 TGATTGGAACCCACAAGAGATGAGG 1043 |||||||||||||||| ||| |||| Sbjct 31770016 TGATTGGAACCCACAACAGACGAGG 31769992 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 71.6 bits (78), Expect = 2e-10 Identities = 86/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 633 GCCGAGATTGTCGATATTTTCTTCGTGGATACAACACCGTTCGTAGATAGATATTTTGAT 692 || || ||||| || |||||||| |||||||||| || || || || | || || | Sbjct 12049473 GCAGAAATTGTAGACTTTTTCTTCTTGGATACAACTCCTTTTGTTGACAAGTACTTCAAC 12049532 Query 693 GAACCAAAGGACCATGTATATGATTGGAGAGGCGTATTACCGAGAAATAAATACCTT 749 | ||||||| | | || ||||| |||||||||||| |||| || | | |||||| Sbjct 12049533 AATCCAAAGGGCGAGGTCTATGACTGGAGAGGCGTACTACCTCGAGACCATTACCTT 12049589 Score = 69.8 bits (76), Expect = 7e-10 Identities = 87/117 (74%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 258 GCAGAGCTACCGCGGTTCGTCCAA-CCAC--CAGAACCCGATGGTTCACTCAGTTTTCTC 314 |||||||| | ||||| | ||| |||| || || |||| ||||| || || ||| | Sbjct 12047202 GCAGAGCTTCGACGGTTTGAGCAAGCCACAACAAAAGCCGACGGTTCTCTAAGCTTTTTG 12047261 Query 315 GTTGTCGGCGACTGGGGAAGAAGAGGTTCTTATAATCAGTCCCAAGTAGCTCTTCAG 371 || ||||| ||||||||||||||||| ||| || || | |||| |||| |||| Sbjct 12047262 GTCGTCGGAGACTGGGGAAGAAGAGGAGGTTACAACCAAACTGAAGTTGCTCATCAG 12047318 Score = 66.2 bits (72), Expect = 9e-09 Identities = 72/96 (75%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 771 GATGTGGCATTGCAAGAATCAATGGCTAAATGGAAAATAGTGGTAGGCCATCACACGATC 830 ||| ||||||| ||||||| | || || ||||| || ||||| || || || || ||| Sbjct 12049902 GATTTGGCATTAAAAGAATCGAATGCCAAGTGGAAGATCGTGGTTGGTCACCATACTATC 12049961 Query 831 AAAAGTGCAGGTCACCACGGAAATACCATAGAGCTT 866 |||||||| || |||| || || ||| |||||| Sbjct 12049962 AAAAGTGCTGGAAACCATGGTAACACCGATGAGCTT 12049997 Score = 64.4 bits (70), Expect = 3e-08 Identities = 56/70 (80%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 892 AGGCTAATGAAGTGGATCTCTATATAAACGGGCATGATCATTGCTTGGAGCACATAAGCA 951 |||| || | || ||||| || ||||| |||||||| ||||||||||| |||||||| | Sbjct 12050312 AGGCAAACTATGTTGATCTTTACATAAATGGGCATGACCATTGCTTGGAACACATAAGTA 12050371 Query 952 GCATCAACAG 961 || | |||| Sbjct 12050372 GCTCCGACAG 12050381 Score = 62.6 bits (68), Expect = 1e-07 Identities = 92/128 (72%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 402 GATTTCCTCATTTCGACTGGAGATAACTTTTATGATGATGGAATAATCAGTCCAT-ATGA 460 ||||| | || || || || |||||||| || |||| || | | ||| | |||| Sbjct 12048636 GATTTTGTGATCTCCACCGGTGATAACTTCTACGATGCCGGTTTGA-CAGGCGTCGATGA 12048694 Query 461 TTCTCAATTTCAAGATTCGTTTACCAATATTTACACAGCAACTAGCTTACAAAAACCATG 520 | | |||| | || ||||| || |||| |||||||| ||||||| ||||| | ||| Sbjct 12048695 TCCGGCATTTGACGAGTCGTTCACAGATATCTACACAGCGCCTAGCTTGCAAAAGCAATG 12048754 Query 521 GTACAATG 528 |||||||| Sbjct 12048755 GTACAATG 12048762 Score = 62.6 bits (68), Expect = 1e-07 Identities = 76/104 (73%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 969 CAATTTATGACAAGTGGAGGTGGCTCCAAGGCGTGGAAAGGAGATGTGAATGATTGGAAC 1028 |||||| | || |||||||| || || ||||| |||| ||| || | | | ||||| Sbjct 12074795 CAATTTCTAACCAGTGGAGGGGGTTCAAAGGCATGGAGAGGTGACATTAGGAAGTGGAAT 12074854 Query 1029 CCACAAGAGATGAGGTTTTACTATGATGGACAAGGATTCATGTC 1072 ||| | || ||| | | || ||||||||||| || || ||||| Sbjct 12074855 CCAGAGGAATTGAAGCTATATTATGATGGACAGGGTTTTATGTC 12074898 Score = 50.0 bits (54), Expect = 7e-04 Identities = 87/127 (69%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 399 ATTGATTTCCTCATTTCGACTGGAGATAACTTTTATGATGATGGAATAATCAGTCCATAT 458 || || ||| |||| || ||||| |||||||||||||| || || | || | Sbjct 12072282 ATAGACTTCGTCATCTCAACTGGGGATAACTTTTATGAGGACGGTTTGGATGGTGTGCTT 12072341 Query 459 GATTCTCAATTTCAAGATTCGTTTACCAATATTTACACAGCAACTAGCTTACAAAAACCA 518 ||| | ||||| | || || |||| ||||| ||| | | ||||| || |||| | Sbjct 12072342 GATCCGGAATTTAATGAATCCTTTATAAATATCTACGACTCCCCCAGCTTGCAGAAACAA 12072401 Query 519 TGGTACA 525 ||||||| Sbjct 12072402 TGGTACA 12072408 Score = 41.0 bits (44), Expect = 0.34 Identities = 42/54 (78%), Gaps = 2/54 (4%) Strand=Plus/Plus Query 1276 ATTTTTTAATGTTGTGTGATTATTTTCGAATTCTTAATGGTATCTTAATACATG 1329 ||||||||||| ||||||||| |||| ||| |||| |||| | || | ||| Sbjct 23512539 ATTTTTTAATGATGTGTGATTTTTTTAAAATGTTTAA--GTATATAAAAAAATG 23512590 Score = 39.2 bits (42), Expect = 1.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 949 GCAGCATCAACAGTGGAATACAATTTATGAC 979 |||||||||||||| ||| ||||| | |||| Sbjct 24317220 GCAGCATCAACAGTTGAAAACAATCTCTGAC 24317250 Score = 39.2 bits (42), Expect = 1.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 500 AACTAGCTTACAAAAACCATGGTACAATGTA 530 ||| ||||||||||||||| | |||||| || Sbjct 25600787 AACAAGCTTACAAAAACCAAGTTACAATCTA 25600817 Score = 39.2 bits (42), Expect = 1.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 500 AACTAGCTTACAAAAACCATGGTACAATGTA 530 ||| ||||||||||||||| | |||||| || Sbjct 25661841 AACAAGCTTACAAAAACCAAGTTACAATATA 25661871 Score = 39.2 bits (42), Expect = 1.2 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 500 AACTAGCTTACAAAAACCATGGTACAATGTA 530 ||| ||||||||||||||| | |||||| || Sbjct 25671967 AACAAGCTTACAAAAACCAAGTTACAATATA 25671997 Score = 37.4 bits (40), Expect = 4.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1365 TTTACATTTAATATATAATTATA 1387 ||||||| ||||||||||||||| Sbjct 13240929 TTTACATATAATATATAATTATA 13240907 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 57.2 bits (62), Expect = 4e-06 Identities = 75/104 (72%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 528 GTATTAGGAAATCATGATTATAGAGGTAACGTCTATGCGCAACTCAGCCCCATACTCAGG 587 || || || || |||||||||||||| || || | || || | ||||| | |||||| Sbjct 16880973 GTTTTGGGCAACCATGATTATAGAGGCAATGTAGAGGCACAGTTGAGCCCTCTCCTCAGG 16880914 Query 588 GATTTGGACTGCCGTTGGATTTGTTTAAGATCTTATGTTGTTAA 631 | | || || | ||||||||| | ||||||| | |||| || Sbjct 16880913 AAAATTGATAGCAGATGGATTTGTCTGAGATCTTTTATTGTGAA 16880870 Score = 46.4 bits (50), Expect = 0.008 Identities = 108/162 (67%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 365 TCTT-CAGATGGGAAAAATAGGGAAGGACTTAAATATTGATTTCCTCATTTCGACTGGAG 423 |||| |||||||||| || || || | ||| | || |||| | |||| || |||| Sbjct 16881246 TCTTGCAGATGGGAAGGATTGGAGAGAAGTTAGACATCAATTTTGTTGTTTCTACAGGAG 16881187 Query 424 ATAACTTTTATGATGATGGAATAATCAGTCCATATGATTCTCAATTTCAAGATTCGTTTA 483 |||| || || || ||||| | ||| | || | |||| || ||||||| Sbjct 16881186 ATAATTTCTACGACAATGGATTGTCTAGTGTGCAGGACACCGCATTTGTGGAGTCGTTTA 16881127 Query 484 CCAATATTTACACAGCAACTAGCTTACAAAAACCATGGTACA 525 |||| || |||||||| | ||| | || || ||||||| Sbjct 16881126 CCAAAATCTACACAGCCAAGAGCCTGCAGAAGTTGTGGTACA 16881085 Score = 39.2 bits (42), Expect = 1.2 Identities = 36/46 (78%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 295 ATGGTTCACTCAGTTTTCTCGTTGTCGGCGACTGGGGAAGAAGAGG 340 |||| || | || ||| | ||| | || ||||||||||||||||| Sbjct 16881465 ATGGGTCGGTTAGCTTTTTGGTTATTGGGGACTGGGGAAGAAGAGG 16881420 Score = 39.2 bits (42), Expect = 1.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1372 TTAATATATAATTATACTGTA 1392 ||||||||||||||||||||| Sbjct 19505114 TTAATATATAATTATACTGTA 19505094 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 4684301 TTATGTTGATATTTCATGTG 4684282 Score = 37.4 bits (40), Expect = 4.2 Identities = 59/82 (72%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 645 GATATTTTCTTCGTGGATACAACACCGTTCGTAGATAGATATTTTGATGA-ACCAAAGGA 703 || ||| | || ||||| || || || || || || | || ||| ||| ||| |||| Sbjct 16880746 GAGATTATATTAGTGGACACCACTCCTTTTGTCAATGGTTACTTTCCTGATACCGAAGG- 16880688 Query 704 CCATGTATATGATTGGAGAGGC 725 |||| ||||||||||| ||| Sbjct 16880687 CCATACTTATGATTGGAGGGGC 16880666 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 46.4 bits (50), Expect = 0.008 Identities = 28/30 (93%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1257 TATTTCATGTGAGTTAAACATTTTTTAATG 1286 |||| || |||||||||||||||||||||| Sbjct 34811581 TATTGCAAGTGAGTTAAACATTTTTTAATG 34811610 Score = 41.0 bits (44), Expect = 0.34 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1353 GTTTTGATTTCGTTTACATTTAATATATAA 1382 |||||| ||| |||| |||||||||||||| Sbjct 31682697 GTTTTGGTTTAGTTTGCATTTAATATATAA 31682668 Score = 41.0 bits (44), Expect = 0.34 Identities = 41/50 (82%), Gaps = 4/50 (8%) Strand=Plus/Minus Query 1219 ATTATTTATATTAATTAGTCCATTGTTTATTATGTTGATA--TTTCATGT 1266 ||| ||||| |||||| || ||| ||| ||||||||||| |||||||| Sbjct 35676770 ATTGTTTAT-TTAATTTTTC-ATTCTTTGTTATGTTGATATTTTTCATGT 35676723 Score = 39.2 bits (42), Expect = 1.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1272 AAACATTTTTTAATGTTGTGT 1292 ||||||||||||||||||||| Sbjct 7200860 AAACATTTTTTAATGTTGTGT 7200840 Score = 39.2 bits (42), Expect = 1.2 Identities = 35/43 (81%), Gaps = 1/43 (2%) Strand=Plus/Minus Query 1317 ATCTTAATACATGGAGACAT-ATCTTCTCATGATTTGGTTTTG 1358 ||| |||||||||||| ||| ||| ||| |||| | |||||| Sbjct 25560188 ATCCTAATACATGGAGGCATGATCATCTTATGAGATTGTTTTG 25560146 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1271 TAAACATTTTTTAATGTTG-TGTGATTATTTT 1301 |||| ||||||||||| || ||||||| |||| Sbjct 11536341 TAAATATTTTTTAATGATGTTGTGATTTTTTT 11536372 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 42.8 bits (46), Expect = 0.099 Identities = 50/65 (77%), Gaps = 6/65 (9%) Strand=Plus/Minus Query 11 GTTATTTTTCTAGTGACAAAG-TTCATTACATTA----ttttttctcttgcctttttcta 65 ||| |||||||| | |||||| |||||||||||| |||||| | || ||||| | Sbjct 18807880 GTTGTTTTTCTACT-ACAAAGGTTCATTACATTAGGGGTTTTTTTTTTTTTTTTTTTTTT 18807822 Query 66 ttttt 70 ||||| Sbjct 18807821 TTTTT 18807817 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 1765053 TTATGTTGATATTTCATGTG 1765034 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 211 TTTCTATTTTCTGTCTAGTTATTAT 235 ||||||||||||||| |||||||| Sbjct 23027920 TTTCTATTTTCTGTCACGTTATTAT 23027944 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1241 TTGTTTATTATGTTGATATTTCATG 1265 ||||||||||| || |||||||||| Sbjct 23279899 TTGTTTATTATTTTAATATTTCATG 23279923 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 201 AAACTCATATTTTCTATTTT 220 |||||||||||||||||||| Sbjct 23317506 AAACTCATATTTTCTATTTT 23317525 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 42.8 bits (46), Expect = 0.099 Identities = 39/47 (83%), Gaps = 3/47 (6%) Strand=Plus/Minus Query 1218 AATTATTTATATTAATTAGTCCATTGTTTATTATGTTGATATTTCAT 1264 |||||||||||| |||| | ||| ||||||| |||||||||| || Sbjct 793205 AATTATTTATATAAATT--TTTATT-TTTATTAAGTTGATATTTTAT 793162 Score = 37.4 bits (40), Expect = 4.2 Identities = 36/45 (80%), Gaps = 1/45 (2%) Strand=Plus/Plus Query 1272 AAACATTTTTTAATG-TTGTGTGATTATTTTCGAATTCTTAATGG 1315 ||||||||||||||| | ||||||| |||| || | |||| || Sbjct 8988529 AAACATTTTTTAATGATCTTGTGATTTTTTTTAAAATATTAAAGG 8988573 Score = 37.4 bits (40), Expect = 4.2 Identities = 29/34 (85%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 1256 ATATTTCATGTGAG---TTAAACATTTTTTAATG 1286 |||||| ||||||| ||||| ||||||||||| Sbjct 26111682 ATATTTTATGTGAGAATTTAAAAATTTTTTAATG 26111715 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 41.0 bits (44), Expect = 0.34 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1277 TTTTTTAATGTTGTGTGATTATTTT 1301 |||||||||||||| |||||||||| Sbjct 32498313 TTTTTTAATGTTGTATGATTATTTT 32498337 Score = 39.2 bits (42), Expect = 1.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1029 CCACAAGAGATGAGGTTTTACTATGA 1054 ||||||||||||| |||| ||||||| Sbjct 17479509 CCACAAGAGATGAAGTTTAACTATGA 17479534 Score = 37.4 bits (40), Expect = 4.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1365 TTTACATTTAATATATAATTATA 1387 ||| ||||||||||||||||||| Sbjct 2771089 TTTTCATTTAATATATAATTATA 2771067 Score = 37.4 bits (40), Expect = 4.2 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1366 TTACATTTAATATATAATTATACTGTAC 1393 ||||||||||| || |||||||||| || Sbjct 19016142 TTACATTTAATTTAAAATTATACTGAAC 19016169 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 21568874 TTATGTTGATATTTCATGTG 21568893 Score = 37.4 bits (40), Expect = 4.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1365 TTTACATTTAATATATAATTATA 1387 ||||||| ||||||||||||||| Sbjct 21749527 TTTACATATAATATATAATTATA 21749505 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 196 CTATCAAACTCATATTTTCTATTTT 220 |||| ||||||||||||| |||||| Sbjct 30982225 CTATAAAACTCATATTTTTTATTTT 30982249 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 41.0 bits (44), Expect = 0.34 Identities = 30/34 (88%), Gaps = 1/34 (3%) Strand=Plus/Plus Query 29 AAGTTCATTACATTAttttttctcttgccttttt 62 ||||||||||||||||||||| | || | ||||| Sbjct 14255973 AAGTTCATTACATTATTTTTT-TTTTACTTTTTT 14256005 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 10721910 TTATGTTGATATTTCATGTG 10721929 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 41.0 bits (44), Expect = 0.34 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1277 TTTTTTAATGTTGTGTGATTATTTT 1301 |||||||||||||| |||||||||| Sbjct 8043983 TTTTTTAATGTTGTATGATTATTTT 8043959 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1357 TGATTTCGTTTACATTTAATATATA 1381 || |||||||| ||||||||||||| Sbjct 13515567 TGTTTTCGTTTCCATTTAATATATA 13515543 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 16900334 TTATGTTGATATTTCATGTG 16900315 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1364 GTTTACATTTAATATATAATTATAC 1388 ||||| ||||||||||| ||||||| Sbjct 17122739 GTTTAAATTTAATATATTATTATAC 17122715 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1354 TTTTGATTTCGTTTACATTTAATATATAATTAT 1386 |||| |||| ||| | |||||||||||||||| Sbjct 18078303 TTTTCTTTTCTTTTTCTTTTAATATATAATTAT 18078335 Score = 37.4 bits (40), Expect = 4.2 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 506 CTTACAAAAACCATGGTACAATGTATTA 533 ||||||||||| |||||| |||||||| Sbjct 25903603 CTTACAAAAACAATGGTAACATGTATTA 25903630 Score = 37.4 bits (40), Expect = 4.2 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 187 ATGTTAAGCCTATCAAACTCATATTTTCTATTTTCTGTCT 226 ||| ||||||| || ||||| | ||||||||||| ||| Sbjct 39825564 ATGGTAAGCCTCTCTCTCTCATCTCTTCTATTTTCTCTCT 39825525 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 1.2 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 1355 TTTGATTTCGTTTACATTTAATATATAATTA 1385 |||||||| |||||||||||||| ||| ||| Sbjct 10545266 TTTGATTT-GTTTACATTTAATAAATACTTA 10545295 Score = 37.4 bits (40), Expect = 4.2 Identities = 48/64 (75%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 1240 ATTGTTTATTATGTTGATATTTCATG-TGAGTTAAACATTTTTTAATGTTG-TGTGATTA 1297 ||| ||| |||| || ||||| ||| | | ||| ||||||||||| || ||||| | Sbjct 9430732 ATTATTTTTTATTTTTTTATTTAATGATTAAGAAAATATTTTTTAATGATGTTGTGAATT 9430791 Query 1298 TTTT 1301 |||| Sbjct 9430792 TTTT 9430795 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1277 TTTTTTAATGTTGTGTGATTATTTT 1301 |||||||||||||| ||||||||| Sbjct 12891066 TTTTTTAATGTTGTACGATTATTTT 12891090 Score = 37.4 bits (40), Expect = 4.2 Identities = 33/41 (80%), Gaps = 3/41 (7%) Strand=Plus/Minus Query 8 AGAGTTATTTTTCTAGTGACAAAGTTCATTACATTAttttt 48 ||| | |||||| || | ||||||||||||||||| ||| Sbjct 17555162 AGAATCATTTTTGTATT---AAAGTTCATTACATTATGTTT 17555125 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 39.2 bits (42), Expect = 1.2 Identities = 40/49 (82%), Gaps = 4/49 (8%) Strand=Plus/Minus Query 1333 ACATATCTTCTCATGATTTGGTTTTGA-TTTCGTTTACATTTAATATAT 1380 |||||| || | | |||| ||||||| ||| ||||| ||||||||||| Sbjct 4516042 ACATATTTTTTGAAGATT--GTTTTGAGTTTGGTTTA-ATTTAATATAT 4515997 Score = 39.2 bits (42), Expect = 1.2 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Minus Query 198 ATCAAACTCATATTTTCTATTTTCTGTCTAGTTATT 233 |||||||| || |||||||||||||||| | |||| Sbjct 4554733 ATCAAACTGAT-TTTTCTATTTTCTGTCGAAATATT 4554699 Score = 37.4 bits (40), Expect = 4.2 Identities = 36/45 (80%), Gaps = 1/45 (2%) Strand=Plus/Minus Query 1217 TAATTATTTA-TATTAATTAGTCCATTGTTTATTATGTTGATATT 1260 |||||| ||| |||||||||| ||| |||||| ||| ||||| Sbjct 4837968 TAATTAGTTAATATTAATTAGAATATTAATTATTAAGTTAATATT 4837924 Score = 37.4 bits (40), Expect = 4.2 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 1359 ATTTCGTTTACATTTAATATATAATTA 1385 |||||||| |||||||||| ||||||| Sbjct 7480844 ATTTCGTT-ACATTTAATAAATAATTA 7480819 Score = 37.4 bits (40), Expect = 4.2 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1267 GAGTTAAACATTTTTTAATGTTGTGTGATTATTTT 1301 || ||| |||||||||||| || | | |||||||| Sbjct 13451942 GAATTATACATTTTTTAATATTTTTTAATTATTTT 13451976 Score = 37.4 bits (40), Expect = 4.2 Identities = 33/40 (83%), Gaps = 1/40 (3%) Strand=Plus/Minus Query 388 AGGACTTAAATATTGATTTCCTCATTTCGACTGGAGATAA 427 |||| ||| || | ||||||||||||| | ||||||||| Sbjct 14119680 AGGAGTTAGATTATAATTTCCTCATTTCTA-TGGAGATAA 14119642 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 39.2 bits (42), Expect = 1.2 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1255 GATATTTCATGTGAGTTAAACATTTTTTAATGTTGT 1290 ||||| ||||||| || | ||| | ||||||||||| Sbjct 16399146 GATATGTCATGTGGGTGATACAATATTTAATGTTGT 16399181 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 1204 AAGAGTTACGACATAATTA-TTTATATTAATT 1234 || ||||| ||||||||| |||||||||||| Sbjct 6532766 AAAAGTTAAAACATAATTATTTTATATTAATT 6532735 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1277 TTTTTTAATGTTGTGTGATTATTTT 1301 |||||||||||||| ||||||||| Sbjct 17706726 TTTTTTAATGTTGTACGATTATTTT 17706702 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 39.2 bits (42), Expect = 1.2 Identities = 33/41 (80%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 1347 GATTTGGTTTTGATTTCGTTTACATTTAATATATAATTATA 1387 ||||| ||||||||||| | |||||||||||| |||| Sbjct 8905018 GATTTTGTTTTGATTTCAACTCTATTTAATATATATATATA 8904978 Score = 39.2 bits (42), Expect = 1.2 Identities = 28/32 (88%), Gaps = 3/32 (9%) Strand=Plus/Minus Query 1154 GAATGGGGTTTATTCC---GATATCTAATCGA 1182 |||||||||||||||| ||| ||||||||| Sbjct 15069332 GAATGGGGTTTATTCCTTAGATTTCTAATCGA 15069301 Score = 37.4 bits (40), Expect = 4.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1365 TTTACATTTAATATATAATTATA 1387 ||||||| ||||||||||||||| Sbjct 723556 TTTACATATAATATATAATTATA 723578 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 19493413 TTATGTTGATATTTCATGTG 19493432 Score = 37.4 bits (40), Expect = 4.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1251 TGTTGATATTTCATGTGAGTTAAACATTTT 1280 ||||||||||| |||||| || ||||||| Sbjct 24213038 TGTTGATATTTGATGTGACTTTGACATTTT 24213009 Score = 37.4 bits (40), Expect = 4.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1365 TTTACATTTAATATATAATTATA 1387 |||| |||||||||||||||||| Sbjct 28222046 TTTATATTTAATATATAATTATA 28222068 >Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 Length=1158772 Score = 37.4 bits (40), Expect = 4.2 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 1241 TTGTTTATTATGTTGATATTTCATGTGAGTTAAACATTTTTTA 1283 ||| | ||||||||||||||| ||||| | || | |||||| Sbjct 697725 TTGATAATTATGTTGATATTTAGTGTGAATAAATGAGTTTTTA 697683 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 124 CACCATCAGGTCCATCACCT 143 |||||||||||||||||||| Sbjct 11086808 CACCATCAGGTCCATCACCT 11086827 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 124 CACCATCAGGTCCATCACCT 143 |||||||||||||||||||| Sbjct 11106559 CACCATCAGGTCCATCACCT 11106578 Score = 37.4 bits (40), Expect = 4.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 868 AGAAACAACTTTTACCTATCCTC 890 ||| ||||||||||||||||||| Sbjct 20561875 AGATACAACTTTTACCTATCCTC 20561897 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1226 ATATTAATTAGTCCATTGTTTATTA 1250 ||||| ||| ||||||||||||||| Sbjct 23524302 ATATTCATTCGTCCATTGTTTATTA 23524326 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1248 TTATGTTGATATTTCATGTG 1267 |||||||||||||||||||| Sbjct 23884366 TTATGTTGATATTTCATGTG 23884385 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 198 ATCAAACTCATATTTTCTATTTTCT 222 || |||||||||||||| ||||||| Sbjct 17558605 ATAAAACTCATATTTTCCATTTTCT 17558581 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1210 TACGACATAATTATTTATATTAATT 1234 ||| | ||||||||||||||||||| Sbjct 26337243 TACTATATAATTATTTATATTAATT 26337219 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 37.4 bits (40), Expect = 4.2 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 1354 TTTTGATTTCGTTTACATTTAATATATAATTATA 1387 |||| |||| |||| || ||||||||||||||| Sbjct 17239605 TTTTAATTT--TTTATATATAATATATAATTATA 17239636 Score = 37.4 bits (40), Expect = 4.2 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1251 TGTTGATATTTCATGTGAGTTAAACATTTT 1280 ||| |||||||||||||| || |||||||| Sbjct 36211862 TGTAGATATTTCATGTGACTT-AACATTTT 36211890 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1355 TTTGATTTCGTTTACATTTAATATATAATTATA 1387 ||| |||| |||| || ||||||||||||||| Sbjct 42076827 TTTTATTTTATTTATATATAATATATAATTATA 42076795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735705460416 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2