BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1264 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr5D 132 6e-29 lcl|Jr6S 42.8 0.088 lcl|Jr3D 41.0 0.31 lcl|Jr8S 39.2 1.1 lcl|Jr8D 39.2 1.1 lcl|Jr7S 39.2 1.1 lcl|Jr7D 39.2 1.1 lcl|Jr6D 39.2 1.1 lcl|Jr5S 39.2 1.1 lcl|Jr4S 39.2 1.1 lcl|Jr4D 39.2 1.1 lcl|Jr3S 39.2 1.1 lcl|Jr2S 39.2 1.1 lcl|Jr2D 39.2 1.1 lcl|Jr1S 39.2 1.1 lcl|Jr1D 39.2 1.1 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 132 bits (146), Expect = 6e-29 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 241 CAGATTTTGTGGTCTATTTGGGAGATGTTGTGACGGCTAACAACATAGCAATCCAAAACG 300 |||||||||| | || | |||||||| | ||||| || || ||| ||| ||| | Sbjct 3724213 CAGATTTTGTTATATACCTTGGAGATGTCATTACGGCAAATAATATACTAATTGCAAATG 3724154 Query 301 CAAGCTTGTTTTGGGACAAAGCAATCTCTCCTACAAGAGACAGAGGCATTCCATGGGCTA 360 | ||||||| |||||| | ||||||||||| |||| | ||| || ||||||||||| | Sbjct 3724153 CCAGCTTGTATTGGGATCAGGCAATCTCTCCAACAAAATCCAGGGGTATTCCATGGGCCA 3724094 Query 361 CTCTCTTTGGTAACCATGACGATGCTTCTTTTGTTTGGCCTTTGGATTGGTTGTCTTCCT 420 | | ||||| |||||||||||||| |||| ||||| |||| ||||| || || Sbjct 3724093 GTGTGTTTGGAAACCATGACGATGCACTGTTTGAATGGCCAATGGAATGGTTTTCAGCCC 3724034 Query 421 CCGGTATTCCTCCCCTTCGTTGCCCTGCAGC 451 | || ||||||| ||| |||||| | ||| Sbjct 3724033 CTGGAATTCCTCGACTTATTTGCCCAGAAGC 3724003 Score = 122 bits (134), Expect = 1e-25 Identities = 138/182 (76%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 904 AGGCAGTGTTTGTAGGACACAACCATGGACTAGACTGGTGCTGTCCGTACAAAGATAAAC 963 ||||| | ||||| ||||||||||||||| | |||||||| || || || | |||| Sbjct 3722657 AGGCAATATTTGTTGGACACAACCATGGATTGGACTGGTGTTGCCC---CAGTGGGAAAC 3722601 Query 964 TCTGGCTTTGCTTTGCGAGACACACAGGTTATGGTGGATATGGAAATTGGCCAAGGGGAT 1023 ||||||| |||||||| ||||| || ||||||||||| |||||| | ||| | || ||| Sbjct 3722600 TCTGGCTGTGCTTTGCAAGACATACTGGTTATGGTGGCTATGGAGACTGGGCTAGAGGAG 3722541 Query 1024 CAAGGATTTTGGAGATTTCTGAAATGCCCTT-TCGTATTAAGACCTGGATTAGGATGGAA 1082 | || ||| | || || | | | |||||| ||| |||| | ||||| |||||||| Sbjct 3722540 CTAGAATTCTAGAAATCACCCAGAAGCCCTTCTCG-GTTAAATCTTGGATAAGGATGGAG 3722482 Query 1083 GA 1084 || Sbjct 3722481 GA 3722480 Score = 105 bits (116), Expect = 9e-21 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 741 CCGGAGTTGATATTTTGGCACATACCTAGTAAAGCATACAAGAAAGTAGCTCCAAGGTTA 800 || ||| | ||||| |||||||| || ||| ||||||||||||| || |||||| |||| Sbjct 3722961 CCTGAGCTAATATTCTGGCACATTCCAAGTCAAGCATACAAGAAGGTTGCTCCATGGTT- 3722903 Query 801 TGGATAACAAAA-CCTTGCGTTGGATCAATCAACAAAGAGAAAGTTGTTGCTCAAGAAGC 859 |||| ||| | |||||||| || | ||| ||||| || |||| |||||||||||| Sbjct 3722902 TGGAATACACCAGCCTTGCGTGGGCTTAATTAACAAGGAAGGTGTTGCTGCTCAAGAAGC 3722843 Query 860 TGAAAATGGGATGATGAGAGTTCTT 884 |||| || || |||| | ||||| Sbjct 3722842 TGAATTGGGTATCATGAAACTTCTT 3722818 Score = 66.2 bits (72), Expect = 8e-09 Identities = 89/124 (72%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 120 CCTTTCAAGATCGCAATATTTGCAGACCTCCACTTCGGTGAAGACACGTGGACTGATTGG 179 |||||||||||||| | || || ||||| || ||||| |||| | || || || ||| Sbjct 3727929 CCTTTCAAGATCGCTCTCTTCGCGGACCTGCATTTCGGGGAAGCCGAGTCCACCGACTGG 3727870 Query 180 GGTCCTGGTCAGGATGTGAACTCCGTTAACGTTATGTCCGCCGTTCTCGACGCTGAAACT 239 || | || ||||| |||||||| | || ||| | || || |||| ||||||| Sbjct 3727869 GGACAGGGCCAGGACGTGAACTCTACAAGAGTCATGAATACTGTACTGGACGATGAAACT 3727810 Query 240 CCAG 243 |||| Sbjct 3727809 CCAG 3727806 Score = 39.2 bits (42), Expect = 1.1 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Plus Query 747 TTGATATTTTG-GCACATACCTAGTAAAGCATA 778 |||||| |||| |||||||||||||| | |||| Sbjct 28132566 TTGATAATTTGTGCACATACCTAGTAGATCATA 28132598 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATAT 1140 ||||||||||||||| || |||| | |||| Sbjct 10438666 TAACATATGATTAGTATAATTATAAAATAT 10438637 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATAT 1140 ||||||||||||||| || || ||| |||| Sbjct 20752948 TAACATATGATTAGTGTAATTGTCAAATAT 20752919 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 42.8 bits (46), Expect = 0.088 Identities = 28/31 (90%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| ||||||| | ||||| Sbjct 5885183 TAACATATGATTAGTGTATTTATAAAATATG 5885213 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 13906782 TAACATATGATTAGTGTAATTATAAAATATG 13906752 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 13923065 TAACATATGATTAGTGTAATTATAAAATATG 13923035 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 13925070 TAACATATGATTAGTGTAATTATAAAATATG 13925040 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 14703582 TAACATATGATTAGTATAATTATAAAATATG 14703612 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 41.0 bits (44), Expect = 0.31 Identities = 36/43 (84%), Gaps = 3/43 (7%) Strand=Plus/Minus Query 1147 CTTTGTAGAAGTAAT-AGTGCCTATAGTTG--TTGGTAGGTTT 1186 ||||||||||||||| ||||| ||||| | || |||||||| Sbjct 20240082 CTTTGTAGAAGTAATAAGTGCTAATAGTAGCCTTTGTAGGTTT 20240040 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 5493407 TAACATATGATTAGTATAATTATAAAATATG 5493377 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 6575432 TAACATATGATTAGTATAATTATAAAATATG 6575402 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 16730423 TAACATATGATTAGTGTAATTATAAAATATG 16730393 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 28583260 TAACATATGATTAGTGTAATTATAAAATATG 28583230 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 914287 AACATATGATTAGTATAATTATAAAATATG 914258 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATAT 1140 ||||||||||||||| || |||| | |||| Sbjct 6810436 TAACATATGATTAGTGTAATTATAAAATAT 6810407 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 901 TTAAGGCAGTGTTTGTAGGACACAACCATG 930 || ||||| | |||||||||||| |||||| Sbjct 12045560 TTGAGGCATTCTTTGTAGGACACCACCATG 12045531 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 2608587 TAACATATGATTAGTGTAATTATAAAATATG 2608557 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 14047645 TAACATATGATTAGTGTAATTATAAAATATG 14047615 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 1382142 TAACATATGATTAGTGTAATTATAAAATATG 1382112 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 1805879 TAACATATGATTAGTGTAATTATAAAATATG 1805849 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 4062692 TAACATATGATTAGTGTAATTATAAAATATG 4062722 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 13114076 TAACATATGATTAGTGTAATTATAAAATATG 13114046 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 23862990 TAACATATGATTAGTGTAATTATAAAATATG 23863020 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 23963991 TAACATATGATTAGTGTAATTATAAAATATG 23964021 Score = 39.2 bits (42), Expect = 1.1 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 439 GTTGCCCTGCAGCATCAGATG 459 ||||||||||||||||||||| Sbjct 29961717 GTTGCCCTGCAGCATCAGATG 29961737 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATAT 1140 ||||||||||||||| || |||| | |||| Sbjct 15286550 TAACATATGATTAGTATAATTATAAAATAT 15286579 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 1.1 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 686 TCAAGTGGAATGGTTTAAAACCAA 709 ||||||||||||||| |||||||| Sbjct 3553456 TCAAGTGGAATGGTTGAAAACCAA 3553479 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 4732674 TAACATATGATTAGTGTAATTATAAAATATG 4732704 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATAT 1140 ||||||||||||||| || |||| | |||| Sbjct 4204812 TAACATATGATTAGTGTAATTATAAAATAT 4204783 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 7012593 TAACATATGATTAGTATAATTATAAAATATG 7012563 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 10233162 TAACATATGATTAGTGTAATTATAAAATATG 10233192 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 11566705 TAACATATGATTAGTGTAATTATAAAATATG 11566675 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 23733745 TAACATATGATTAGTATAATTATAAAATATG 23733715 Score = 37.4 bits (40), Expect = 3.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 793 CAAGGTTATGGATAACAAAACCTTG 817 ||||| | ||||||||||||||||| Sbjct 18542318 CAAGGATTTGGATAACAAAACCTTG 18542294 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 4809264 TAACATATGATTAGTGTAATTATAAAATATG 4809234 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 10704689 TAACATATGATTAGTGTAATTATAAAATATG 10704719 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 23898638 TAACATATGATTAGTGTAATTATAAAATATG 23898608 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 24144491 TAACATATGATTAGTGTAATTATAAAATATG 24144461 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 28529027 TAACATATGATTAGTGTAATTATAAAATATG 28528997 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| ||||| | | ||||| Sbjct 30951753 TAACATATGATTAGTGTATTTGTAAAATATG 30951723 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 35852350 TAACATATGATTAGTATAATTATAAAATATG 35852320 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 8772047 TAACATATGATTAGTGTAATTATAAAATATG 8772077 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 16705169 TAACATATGATTAGTGTAATTATAAAATATG 16705139 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 24211243 TAACATATGATTAGTATAATTATAAAATATG 24211213 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 31215368 TAACATATGATTAGTATAATTATAAAATATG 31215398 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 31243083 TAACATATGATTAGTATAATTATAAAATATG 31243113 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 629613 AACATATGATTAGTGTAATTATAAAATATG 629584 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 4552084 AACATATGATTAGTGTAATTATAAAATATG 4552055 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATAT 1140 ||||||||||||||| || |||| | |||| Sbjct 27850910 TAACATATGATTAGTGTAATTATAAAATAT 27850939 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 2325458 TAACATATGATTAGTGTAATTATAAAATATG 2325488 Score = 37.4 bits (40), Expect = 3.8 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 1105 TTAACCTAACATATGATTAGTCTATTTATCACATATG 1141 ||||| ||||||||||||||| || || | | ||||| Sbjct 28718673 TTAAC-TAACATATGATTAGTGTAATTGTAAAATATG 28718708 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.1 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 828 ATCAACAAAGAGAAAGTTGTTGCT 851 |||||||||||||||| ||||||| Sbjct 7577097 ATCAACAAAGAGAAAGATGTTGCT 7577120 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 22917307 TAACATATGATTAGTGTAATTATAAAATATG 22917277 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 30549841 TAACATATGATTAGTGTAATTATAAAATATG 30549811 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 34329128 TAACATATGATTAGTATAATTATAAAATATG 34329158 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 1660204 AACATATGATTAGTATAATTATAAAATATG 1660233 Score = 37.4 bits (40), Expect = 3.8 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 985 ACACAGGTTATGGTGGATAT 1004 |||||||||||||||||||| Sbjct 23847833 ACACAGGTTATGGTGGATAT 23847814 Score = 37.4 bits (40), Expect = 3.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 701 TAAAACCAAGTCTAATACTCTTAAT 725 ||||||||| |||||||||||||| Sbjct 29810972 TAAAACCAATACTAATACTCTTAAT 29810948 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 3849320 TAACATATGATTAGTGTAATTATAAAATATG 3849350 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 4300052 TAACATATGATTAGTGTAATTATAAAATATG 4300082 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 5794173 TAACATATGATTAGTGTAATTATAAAATATG 5794143 Score = 39.2 bits (42), Expect = 1.1 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATGTCAAA 1146 ||||||||||||| | || |||| | |||||| ||| Sbjct 23677976 TAACATATGATTAATGTAATTATAAAATATGTAAAA 23677941 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 24540632 TAACATATGATTAGTGTAATTATAAAATATG 24540662 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 25403785 TAACATATGATTAGTGTAATTATAAAATATG 25403755 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 26997643 TAACATATGATTAGTATAATTATAAAATATG 26997613 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 22049644 AACATATGATTAGTGTAATTATAAAATATG 22049673 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 1727117 TAACATATGATTAGTGTAATTATAAAATATG 1727147 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 1953215 TAACATATGATTAGTGTAATTATAATATATG 1953245 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 8292361 TAACATATGATTAGTGTAATTATAAAATATG 8292391 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 34523372 TAACATATGATTAGTGTAATTATAAAATATG 34523342 Score = 37.4 bits (40), Expect = 3.8 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 245 TTTTGTGGTCTATTTGGGAGATG 267 ||||||||| ||||||||||||| Sbjct 3854471 TTTTGTGGTGTATTTGGGAGATG 3854449 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATAT 1140 ||||||||||||||| || |||| | |||| Sbjct 5261643 TAACATATGATTAGTGTAATTATAAAATAT 5261672 Score = 37.4 bits (40), Expect = 3.8 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1169 ATAGTTGTTGGTAGGTTTGGTCA 1191 |||||||||||||| |||||||| Sbjct 33084579 ATAGTTGTTGGTAGTTTTGGTCA 33084601 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 2131093 TAACATATGATTAGTATAATTATAAAATATG 2131063 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 2314502 TAACATATGATTAGTGTAATTATAAAATATG 2314532 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 5639612 TAACATATGATTAGTGTAATTATAAAATATG 5639582 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 8356013 TAACATATGATTAGTGTAATTATAAAATATG 8355983 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 34127487 TAACATATGATTAGTGTAATTATAAAATATG 34127517 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 40424329 TAACATATGATTAGTGTAATTATAAAATATG 40424359 Score = 37.4 bits (40), Expect = 3.8 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 1105 TTAACCTAACATATGATTAGTCTATTTATCACATATG 1141 ||||| || |||||||||||| || |||| | ||||| Sbjct 22877634 TTAAC-TAGCATATGATTAGTGTAATTATAAAATATG 22877599 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 34810137 AACATATGATTAGTGTAATTATAAAATATG 34810166 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 5379199 TAACATATGATTAGTGTAATTATAAAATATG 5379229 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 23231282 TAACATATGATTAGTGTAATTATAAAATATG 23231252 Score = 37.4 bits (40), Expect = 3.8 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 256 ATTTGGGAGATGTTGTGACGGCTA--ACAACATA 287 |||| ||| |||||||||||| || |||||||| Sbjct 13374204 ATTTTGGATATGTTGTGACGGTTAATACAACATA 13374171 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 18148975 AACATATGATTAGTGTAATTATAAAATATG 18149004 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1112 AACATATGATTAGTCTATTTATCACATATG 1141 |||||||||||||| || |||| | ||||| Sbjct 19824248 AACATATGATTAGTGTAATTATAAAATATG 19824219 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 7578988 TAACATATGATTAGTGTAATTATAAAATATG 7578958 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 10996287 TAACATATGATTAGTGTAATTATAAAATATG 10996317 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 12239903 TAACATATGATTAGTGTAATTATAAAATATG 12239873 Score = 39.2 bits (42), Expect = 1.1 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1111 TAACATATGATTAGTCTATTTATCACATATG 1141 ||||||||||||||| || |||| | ||||| Sbjct 32067945 TAACATATGATTAGTGTAATTATAAAATATG 32067975 Score = 37.4 bits (40), Expect = 3.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 772 AAGCATACAAGAAAGTAGCTCCAAGGTTAT 801 ||||| | ||| | |||||||||||||||| Sbjct 5294644 AAGCACATAAGTAGGTAGCTCCAAGGTTAT 5294615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 659247698178 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2