BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1542 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr6D 495 6e-138 lcl|Jr5D 140 5e-31 lcl|Jr7S 60.8 4e-07 lcl|Jr3S 51.8 2e-04 lcl|Jr3D 51.8 2e-04 lcl|Jr4D 50.0 7e-04 lcl|Jr2D 48.2 0.003 lcl|Jr1D 44.6 0.031 lcl|JrScfU0001 41.0 0.38 lcl|Jr8S 41.0 0.38 lcl|Jr7D 41.0 0.38 lcl|Jr4S 41.0 0.38 lcl|Jr2S 39.2 1.3 lcl|JrScfU0035 37.4 4.6 lcl|Jr8D 37.4 4.6 lcl|Jr6S 37.4 4.6 lcl|Jr5S 37.4 4.6 lcl|Jr1S 37.4 4.6 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 495 bits (548), Expect = 6e-138 Identities = 513/672 (76%), Gaps = 0/672 (0%) Strand=Plus/Minus Query 172 AGGTGCATATCTCATTGGCTGGAGATAAACATATGCGAGTTACTTGGGTTACGAATGACA 231 |||| || ||||| ||||| ||||| | || |||||||| || ||||| || ||| | Sbjct 36168296 AGGTTCACATCTCTTTGGCCGGAGACAGGCACATGCGAGTGACATGGGTCACTGTTGATA 36168237 Query 232 AATCGTCTCCTTCATTTGTTGAATATGGAACATCGCCAGGGAAATACTCTTATCTTGGTC 291 ||| ||||||||| ||||||| ||||| ||||| || |||| |||| || | | | Sbjct 36168236 AATATTCTCCTTCAATTGTTGAGTATGGTACATCACCTGGGAGATACAGTTCTATAGCCA 36168177 Query 292 AAGGAGAAAGCACCTCCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCG 351 ||||||||||||| || || || ||| || | ||||| |||||||||||||| || || | Sbjct 36168176 AAGGAGAAAGCACATCTTATAGTTATCTATTCTATAGTTCAGGGAAGATACACCACACAG 36168117 Query 352 TCATTGGGCCATTGGAAGCGGATACTGTTTATTATTACCGTTGTGGTGGAGAAGGACCTG 411 |||| ||||| ||||| | || | || | |||||| ||||| ||| ||||||| | Sbjct 36168116 TCATCGGGCCTCTGGAACATAACACAATCTACTTTTACCGATGTGGAGGACAAGGACCCG 36168057 Query 412 AGTTCCATTTGAAAACACCACCAGCTCAGTTCCCGATTACTTTTGCAGTGGCGGGGGATC 471 | || || || || || || |||||||| || || |||||||||| ||||| ||||||| Sbjct 36168056 ACTTACAGTTAAAGACCCCTCCAGCTCAATTTCCTGTTACTTTTGCTGTGGCAGGGGATC 36167997 Query 472 TTGGACAAACCGGTTGGACTAAGTCGACTCTAGATCATATTGATCAATGCAAATATGCTG 531 | || ||||| || ||||| || |||||||||| || ||||| | ||||| |||| | Sbjct 36167996 TGGGTCAAACTGGCTGGACCAAAACGACTCTAGACCACATTGACCGGTGCAACTATGATT 36167937 Query 532 TGCATCTACTTCCAGGGGATCTATCGTATGCGGACTATATGCAGCATAAGTGGGACACGT 591 ||||||||||||| ||||| || || ||||| || ||| |||| || |||||||| | Sbjct 36167936 TGCATCTACTTCCTGGGGACCTCTCATATGCTGATTATCTGCAACACCGATGGGACACCT 36167877 Query 592 TTGGGGAACTAGTTCAGCCTCTGGCAAGTGTAAGGCCGTGGATGGTGACACAGGGAAACC 651 |||| || || || ||||| || ||||||| |||||| |||||||| ||| | || |||| Sbjct 36167876 TTGGTGAGCTGGTGCAGCCCCTTGCAAGTGCAAGGCCATGGATGGTTACAGAAGGGAACC 36167817 Query 652 ATGAGAAAGAGAGTATTCCTTTTATAGTTGATGAATTTGTGTCTTTCAACTCGAGGTGGA 711 |||| | |||| || || || | |||| |||| || | || ||||| |||| Sbjct 36167816 ATGAAGAGGAGAACATACCATTGTTGAAGGATGGGTTTGAATCGTATAATTCGAGATGGA 36167757 Query 712 AGATGCCGTATGAGGAAAGTGGGTCAAATTCAAATCTTTATTATTCCTTTGAGGTTGCTG 771 ||||||| | |||||| ||||| || | |||||||||||||||||| ||||| ||||| | Sbjct 36167756 AGATGCCTTTTGAGGAGAGTGGATCGAGTTCAAATCTTTATTATTCATTTGAAGTTGCAG 36167697 Query 772 GTGTCCATGCGATCATGCTTGGCTCATACACAGATTATGATCGGTACTCAGATCAATACA 831 |||| |||| |||||||| || ||||| |||||||||| | | ||||| ||||||| Sbjct 36167696 GTGTTCATGTTATCATGCTCGGTTCATATGTAGATTATGATGAGCAGTCAGACCAATACA 36167637 Query 832 GCTGGTTAAAGG 843 | ||| | |||| Sbjct 36167636 GGTGGCTGAAGG 36167625 Score = 168 bits (186), Expect = 1e-39 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 841 AGGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTCCGTGGCTAATAGTCCTCTTCCATG 900 ||| ||||||||| || |||||||| ||| || || ||||| || || || ||||||| Sbjct 36166049 AGGTTGATCTCTCAAAAGTGGACCGGAAAAAGACACCTTGGCTGATCGTGCTATTCCATG 36165990 Query 901 TACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGATGAAATGATGGCTGAAA 960 | || ||||||||||||||||| || |||||| ||||||||| || |||||| | | Sbjct 36165989 TTCCTTGGTATAACAGTAACAAGGCTCATCAAGGTGAAGGTGACGATATGATGATGGCCA 36165930 Query 961 TGGAGCCTTTGCTTTATGCGAGCGGTGTTGATATTGTATTTACTGGTCATGTCCATGCTT 1020 |||| || ||||||||||| | ||| ||||| ||| || |||||||||| ||||||| Sbjct 36165929 TGGAACCCTTGCTTTATGCCGCCAATGTGGATATAGTACTTGCTGGTCATGTTCATGCTT 36165870 Query 1021 ATGAACGCACG 1031 | ||||||||| Sbjct 36165869 ACGAACGCACG 36165859 Score = 136 bits (150), Expect = 6e-30 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 1137 CCAGAGTGGTCAGTCTTCAGGGAAGCAAGCTTTGGACATGGGGAGCTTCAGATGGTGAAT 1196 || || ||||||||||| |||||||||| ||||| ||||| ||| | |||| |||||| Sbjct 36165406 CCTGAATGGTCAGTCTTTCGGGAAGCAAGTTTTGGTCATGGTGAGTTAAAGATCGTGAAT 36165347 Query 1197 TCAACACATGCGCTATGGACCTGGCATAGGAACGATGATGACGAACCAACAAGGTCTGAT 1256 ||||| ||||| | |||| ||||||| |||| |||||||||||||| |||||||||| Sbjct 36165346 TCAACTCATGCCTTCTGGAGCTGGCATCGGAATGATGATGACGAACCTGTAAGGTCTGAT 36165287 Query 1257 GAAGTTTGGTTAAACTCTCTTGTGAACTCCGGATGC-TTGAAGAAAAGGCCTCAAGAACT 1315 | || ||| ||| || || | | || || ||| ||| || || | | ||||| Sbjct 36165286 CAGGTCTGGATAACGTCACTCATCAGTTCAGGTTGCGTTGCCGAGAA-GAAAAATGAACT 36165228 Query 1316 CAGGAAAATGCTCTTGGAACCTTA 1339 |||||||| || ||| |||||| Sbjct 36165227 AAGGAAAATACTTGTGGCACCTTA 36165204 Score = 84.2 bits (92), Expect = 4e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 1031 GAAACGTGTCAACAATGGTAAATCAGATCCATGTGGTCCCGTACACATTACCATAGGTGA 1090 |||||||||||| | ||| | | ||||| ||||| | || ||||| ||||| ||||| Sbjct 36165783 GAAACGTGTCAATACTGGAAGAGTTGATCCTTGTGGCACTGTCCACATAACCATTGGTGA 36165724 Query 1091 TGGAGGAAACAGAGAAGGATTGGCTC 1116 |||||||||||||||||| || |||| Sbjct 36165723 TGGAGGAAACAGAGAAGGTTTAGCTC 36165698 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1506 TTTGCTTTGTGTTGTTTTTCCCACTATT 1533 || |||||||| ||||||||||| |||| Sbjct 4937984 TTGGCTTTGTGGTGTTTTTCCCATTATT 4937957 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1098 AACAGAGAAGGATTGGCTCGCAAGT 1122 |||||||||||||| |||| ||||| Sbjct 5123411 AACAGAGAAGGATTTGCTCCCAAGT 5123435 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1485 TAAAATTTTGTAAACTTGCACTTTGCTT 1512 ||||||||||| | |||||| ||||||| Sbjct 25252559 TAAAATTTTGTTACCTTGCAGTTTGCTT 25252532 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 30909242 AACTTTAAAATTTTGTAAAATTACA 30909266 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/27 (93%), Gaps = 2/27 (7%) Strand=Plus/Minus Query 1338 TAATTAT--ATCCATAAAGTGAGAATT 1362 ||||||| |||||||||||||||||| Sbjct 32077498 TAATTATTAATCCATAAAGTGAGAATT 32077472 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 34254250 AACTTTAAAATTTTGTAAAATTACA 34254274 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 35336926 AACTTTAAAATTTTGTAAAATTACA 35336902 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 234 TCGTCTCCTTCATTTGTTGAATA 256 ||||||||| ||||||||||||| Sbjct 36684859 TCGTCTCCTGCATTTGTTGAATA 36684881 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 37287237 AACTTTAAAATTTTGTAAAGTTACA 37287261 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 140 bits (154), Expect = 5e-31 Identities = 382/578 (66%), Gaps = 13/578 (2%) Strand=Plus/Plus Query 462 GCGGGGGATCTTGGACAAACCGGTTGGACTAAGTCGACTCTAGATCATATTGATCAATGC 521 || || ||||||||||| || || ||||| | || ||||| | ||||| | ||| Sbjct 1132822 GCAGGCGATCTTGGACAGACTGGGTGGACCCAATCAACTCTCCAACATATAGCAGAATCG 1132881 Query 522 AAATATGCTGTGCATCTACTTCCAGGGGATCTATCGTATGCGGA-CTATATGCAGCATAA 580 || || | ||| ||||||||||| || |||||||||| || || || |||| | Sbjct 1132882 AACTACGACATGCTGCTACTTCCAGGAGACTTATCGTATGCAGATCTCAAT-CAGCCTTT 1132940 Query 581 GTGGGACACGTTTGGGGAACTAGTTCAGCCTCTGGCAAGTGTAAGGCCGTGGATGGTGAC 640 ||||| | ||||| || || |||| ||||| || ||||| ||||||||||| Sbjct 1132941 ATGGGATTCATTTGGAAGGCTTGTCGAGCCACTGGCTAGCCAGAGGCCTTGGATGGTGAC 1133000 Query 641 ACAGGGAAACCATGAGAAAGAGAGTATTCCTTTTATAGTTGATGAA---TTTGTGTCTTT 697 || || |||||||||| |||| || || | || | ||| || | | Sbjct 1133001 GCAAGGCAACCATGAGATTGAGAAGATCCCACTCATCCACAACGAACCCTTCACAGCCTA 1133060 Query 698 CAACTCGAGGTGGAAGATGCCGTATGAGGAAAGTGGGTCAAATTCAAATCTTTATTATTC 757 ||| | || ||| ||||| | || | ||||| || |||||||| | ||||| Sbjct 1133061 CAATGCAAGATGGCGCATGCCATTCGAACAGAGTGGCTCGGGATCAAATCTCTTCTATTC 1133120 Query 758 CTTTGAGGTTGCTGGTGTCCATGCGATCATGCTTGGCTCATACACAGATTATGATCGGTA 817 || | || ||||| || |||| |||||| | || || || ||||||| ||||| | Sbjct 1133121 TTTCAATGTCGCTGGAGTGCATGTCATCATGTTGGGTTCGTATACAGATTTTGATCCTAA 1133180 Query 818 CTCAGATCAATACAGCTGGTTAAAGGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTCC 877 || | || | || |||||| |||| || | |||| | || | | | |||||| Sbjct 1133181 ATCGGCACAGTTCAAGTGGTTAGAGGCAGACTTGCGGAAGATTGATAGGAACAAAACTCC 1133240 Query 878 GTGGCTAATAGTCCTCTTCCATGTACCATGGTATAACAGTAACAATGCCCATCAACATGA 937 |||| | |||| || | |||| || ||||| || ||| | || ||||| ||| Sbjct 1133241 GTGGACAGTAGTGCTTATTCATGCGCCCTGGTACAATTCTAATACAGCTCATCAGGGTGA 1133300 Query 938 -----AGGTGA-TGAAATGATGGCTGAAATGGAGCCTTTGCTTTATGCGAGC-GGTGTTG 990 || || ||| |||| ||| ||||| || ||||| ||||| |||| | Sbjct 1133301 GAAAGAGTCGATTGACATGAAGGCATCCATGGAAGGGTTACTTTA-CCGAGCTCGTGTGG 1133359 Query 991 ATATTGTATTTACTGGTCATGTCCATGCTTATGAACGC 1028 || |||| ||| | || ||||| ||||| ||||| ||| Sbjct 1133360 ATGTTGTTTTTGCCGGACATGTACATGCCTATGAGCGC 1133397 Score = 107 bits (118), Expect = 3e-21 Identities = 376/579 (65%), Gaps = 15/579 (3%) Strand=Plus/Plus Query 462 GCGGGGGATCTTGGACAAACCGGTTGGACTAAGTCGACTCTAGATCATATTGATCAATGC 521 || || ||||||||||| || | ||||| | || || || | || || | ||| Sbjct 1142148 GCAGGTGATCTTGGACAGACTGAGTGGACCGACTCAACCCTCCAACACATAGCAAAATCG 1142207 Query 522 AAATATGCTGTGCATCTACTTCCAGGGGATCTATCGTATGCGGACTATATGCAGCATAAG 581 || || | ||| ||||| ||||| || | | ||||| || | |||| | Sbjct 1142208 AATTACGACATGCTGCTACTGCCAGGAGACTTGGCTTATGCTGATTTCTACCAGCCTTTT 1142267 Query 582 TGGGACACGTTTGGGGAACTAGTTCAGCCTCTGGCAAGTGTAAGGCCGTGGATGGTGACA 641 ||||| | || || || || |||| |||||||| |||| |||||||| || Sbjct 1142268 TGGGATTCATTCGGCAGGCTTGTGGAGCCACTGGCAAGCCAGCGGCCTTGGATGGTAACC 1142327 Query 642 CAGGGAAACCATGAGAAAGAGAGTATTCCTTTTAT--AGTTGATGAA---TTTGTGTCTT 696 || || ||||| ||| |||| ||||| | || | | | || || | | Sbjct 1142328 CAAGGCAACCACGAGGTTGAGAAGATTCCGGTCATCCACTCCA--AACCCTTCACAGCCT 1142385 Query 697 TCAACTCGAGGTGGAAGATGCCGTATGAGGAAAGTGGGTCAAATTCAAATCTTTATTATT 756 ||| | || ||| ||||| | ||| | ||||| || | || || || || |||| Sbjct 1142386 ACAATGCAAGATGGCGCATGCCATTTGAACAGAGTGGATCGGACTCCAACCTATACTATT 1142445 Query 757 CCTTTGAGGTTGCTGGTGTCCATGCGATCATGCTTGGCTCATACACAGATTATGATCGGT 816 | ||| | || ||||| || ||| |||||| | | || ||||| |||| ||||| Sbjct 1142446 CTTTTAATGTAGCTGGGGTTCATATTATCATGTTGAGTTCGTACACGGATTTTGATCCTA 1142505 Query 817 ACTCAGATCAATACAGCTGGTTAAAGGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTC 876 ||| | || || | |||||| |||| ||| | | || | || || ||| ||||| Sbjct 1142506 GTTCACAACAGTATAAGTGGTTAGAGGCAGATATGGGGCAGATTGATCGGAAAATAACTC 1142565 Query 877 CGTGGCTAATAGTCCTCTTCCATGTACCATGGTATAACAGTAACAATGCCCATCAACATG 936 | ||| || |||| || | |||| |||||||| || | || | ||| ||||| || Sbjct 1142566 CATGGATAGTAGTGCTTGTTCATGCGCCATGGTACAATACGAATACTGCTCATCAGGGTG 1142625 Query 937 ---AAG-GT--GATGAAATGATGGCTGAAATGGAGCCTTTGCTTTATGCGAGC-GGTGTT 989 ||| || ||||| |||| |||| |||||| | |||||| | ||| | || Sbjct 1142626 AGAAAGAGTCGGATGAGATGAAGGCTTCAATGGAAGGGCTACTTTAT-CAAGCTCGCGTG 1142684 Query 990 GATATTGTATTTACTGGTCATGTCCATGCTTATGAACGC 1028 ||| |||| || ||||| ||||| || || ||||| ||| Sbjct 1142685 GATGTTGTTTTCACTGGACATGTGCACGCATATGAGCGC 1142723 Score = 91.5 bits (100), Expect = 2e-16 Identities = 214/323 (66%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 705 AGGTGGAAGATGCCGTATGAGGAAAGTGGGTCAAATTCAAATCTTTATTATTCCTTTGAG 764 |||||| |||||| | ||||||||||| || | ||||| | ||||| || ||||| Sbjct 1111949 AGGTGGCGAATGCCGCACGAGGAAAGTGGATCGACCTCAAACTTGTATTACTCATTTGAC 1111890 Query 765 GTTGCTGGTGTCCATGCGATCATGCTTGGCTCATACACAGATTATGATCGGTACTCAGAT 824 |||||||| || || ||| | || || || || || | |||| |||| | Sbjct 1111889 GTTGCTGGGACTCACATTATAATGTTAGGATCTTATACTGAGTTTGATGCTGACTCGTCT 1111830 Query 825 CAATACAGCTGGTTAAAGGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTCCGTGGCTA 884 || |||| ||| | |||| ||| | | || || ||| | | | ||| || ||| | Sbjct 1111829 CAGTACAAGTGGCTTGAGGCCGATTTGGCCAACGTTGACAGGAAGAAAACGCCATGGATC 1111770 Query 885 ATAGTCCTCTTCCATGTACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGAT 944 | || ||||| |||| || |||||||||| ||| | || |||||| |||||| || Sbjct 1111769 TTTGTGCTCTTGCATGCCCCCTGGTATAACACTAATACAGCACATCAAGGTGAAGGAGAA 1111710 Query 945 GAAATGATGGCTGAAATGGAGCCTTTGCTTTATGCGAGCGGTGTTGATATTGTATTTACT 1004 |||| | ||||| ||||| ||| | | || || | || ||| | Sbjct 1111709 AGCATGAGAAAAGCTATGGAAGAGTTGCTGTATAAGGCACGGGTCGACGTGGTTTTTGCA 1111650 Query 1005 GGTCATGTCCATGCTTATGAACG 1027 || ||||| ||||| |||||||| Sbjct 1111649 GGCCATGTTCATGCATATGAACG 1111627 Score = 86.0 bits (94), Expect = 1e-14 Identities = 106/143 (74%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 306 TCCTACAGCTATATAATGTATAGATCAGGGAAGATACATCATACCGTCATTGGGCCATTG 365 || ||||| ||| | | |||| || ||| |||| ||| | ||||| ||||| |||||| Sbjct 1132541 TCGTACAGTTATTTGACGTATGATTCTGGGGAGATTCATGACACCGTAATTGGTCCATTG 1132600 Query 366 GAAGCGGATACTGTTTATTATTACCGTTGTGGTGGAGA-AGGACC--TGAGTTCCATTTG 422 | | || |||| ||||| ||||||||||| ||| ||| |||||| ||| Sbjct 1132601 AAGCCCAATTCTGTATATTACTACCGTTGTGGCATAGATTCCACCCGCGAGTTCAGTTTC 1132660 Query 423 AAAACACCACCAGCTCAGTTCCC 445 ||||| ||||||||||||||||| Sbjct 1132661 AAAACCCCACCAGCTCAGTTCCC 1132683 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 1152 TTCAGGGAAGCAAGCTTTGGACATGGGGAGCTTCAGATGGTGAATTCAACACATGCGCTA 1211 |||||||| || |||||||||||||| | || || |||||||| | || |||||||| Sbjct 1143156 TTCAGGGAGGCGAGCTTTGGACATGGTCAATTTGAGGTGGTGAATGCGACCCATGCGCTC 1143215 Query 1212 TGGACCTGGCATAGGAACGATGAT 1235 ||||| ||||| || || || ||| Sbjct 1143216 TGGACATGGCACAGAAATGACGAT 1143239 Score = 71.6 bits (78), Expect = 2e-10 Identities = 199/301 (66%), Gaps = 17/301 (6%) Strand=Plus/Plus Query 170 GCAGGTGCATATCTCATTGGCTGGAGATAAACATATGCGAGTTACTTGGGTTACGAATGA 229 ||||||||| || || |||| ||| || | | ||| | || | ||| |||| || Sbjct 1141638 GCAGGTGCACATATCTTTGGTTGGCGAGGACAAAATGAGGATTTCATGGATTACC---GA 1141694 Query 230 CAAATCGTCTCCTTCATTTGTTGAATATGGAACATCGCCAGGGAAATAC---TCTTATCT 286 | || | || || || |||||||| ||||| ||| ||||||| |||| | Sbjct 1141695 AAGCTCAACCCCGGCAACAGTAGAATATGGTACATCCCCAACGAAATACGAGTCTTCT-- 1141752 Query 287 TGGTCAAGGAGAAAGCA-CCTCCTACAGCTAT---ATAATGTATAGATCAGGGAAGATAC 342 | || | || || |||| ||| | || ||| |||| | || ||| | |||| Sbjct 1141753 --GCAAATGGGACTACATCCTCGTACCGTTACTCGATAGTGTACAAGTCCGGGGAAATAC 1141810 Query 343 ATCATACCGTCATTGGGCCATTGGAAGCGGATACTGTTTATTATTACCGTTGTGGTGGAG 402 || | || ||||| || ||| | || |||| | ||||| || ||||| ||| || Sbjct 1141811 ATGACGTAGTAATTGGTCCCTTGAAGCCGAATACATTATATTACTATCGTTGCGGTCCAG 1141870 Query 403 A---AGGACCTGAGTTCCATTTGAAAACACCACCAGCTCAGTTCCCGATTACTTTTGCAG 459 ||| | ||| ||| ||| ||||| ||||||||||| ||||| || | ||||||| Sbjct 1141871 CTTCAGGCCGTGACTTCACTTTCAAAACCCCACCAGCTCAATTCCCTATCAAATTTGCAG 1141930 Query 460 T 460 | Sbjct 1141931 T 1141931 Score = 64.4 bits (70), Expect = 3e-08 Identities = 138/201 (69%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 171 CAGGTGCATATCTCATTGGCTGGAGATAAA-CATATGCGAGTTACTTGGGTTACGAATGA 229 ||||||||||| || ||| || || | | || ||| ||||||| ||| |||| |||| Sbjct 1125390 CAGGTGCATATATCTCTGGTAGG-GAGAGATCACATGAGAGTTACATGGATTACTGATGA 1125332 Query 230 CAAATCGTCTCCTTCATTTGTTGAATATGGAACATCGCCAGGGAAATACTCTTAT-CTTG 288 |||| | ||||| |||| ||||||||||| | ||||||||| | || | Sbjct 1125331 CAAACAAGCATCTTCAATTGTGGAATATGGAACGGAGAAAGGGAAATA---TGATGCAAA 1125275 Query 289 GTCAA--GGAGAAAGCACCTCCTACAGCTATATAATGTATAGATCAGGGAAGATACATCA 346 | ||| |||||| || || | || | | |||||| ||||| ||||| || || Sbjct 1125274 GGCAAGGGGAGAACATACAGAATATACTTACTTCAAGTATAGTTCAGGTAAGATCCACCA 1125215 Query 347 TACCGTCATTGGGCCATTGGA 367 || ||||| |||||||| Sbjct 1125214 CACTAAGATTGGACCATTGGA 1125194 Score = 57.2 bits (62), Expect = 5e-06 Identities = 61/81 (75%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1042 ACAATGGTAAATCAGATCCATGTGGTCCCGTACACATTACCATAGGTGATGGAGGAAACA 1101 ||||||| ||| | || ||||| || || || || ||||| || ||||| ||||||| Sbjct 1142890 ACAATGGGAAAGCTGACAATTGTGGCCCAGTGCATATCACCATTGGCGATGGTGGAAACA 1142949 Query 1102 GAGAAGGATTGGCTCGCAAGT 1122 ||||||| | || |||||| Sbjct 1142950 GAGAAGGCCTTGCCAGCAAGT 1142970 Score = 42.8 bits (46), Expect = 0.11 Identities = 59/80 (74%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 1156 GGGAAGCAAGCTTTGGACATGGGGAGCTTCAG-ATGGTGAATTCAACACATGCGCTATGG 1214 |||| ||||||||||||||| ||| | || || | | ||| ||||||||| | ||| Sbjct 1110793 GGGAGGCAAGCTTTGGACAT-GGGCGTTTGAGTGTATTAAATCAAACACATGCACATTGG 1110735 Query 1215 ACCTGGCATAGGAACGATGA 1234 | ||||| | ||| |||| Sbjct 1110734 TCATGGCACCGCAACAATGA 1110715 Score = 42.8 bits (46), Expect = 0.11 Identities = 41/53 (77%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 1057 ATCCATGTGGTCCCGTACACATTACCATAGGTGATGGAGGAAACAGAGAAGGA 1109 ||||||| ||||| || | || || || || ||||||||||| | |||||| Sbjct 1123143 ATCCATGCGGTCCAGTGTATATCACTATTGGGGATGGAGGAAATCGCGAAGGA 1123091 Score = 41.0 bits (44), Expect = 0.38 Identities = 32/37 (86%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 629 GTGGATGGTGACACAGGGAAACCATGAGAAAGAGAGT 665 |||| |||||||| |||||||||||||| |||| || Sbjct 26323215 GTGG-TGGTGACATGGGGAAACCATGAGAGAGAGCGT 26323180 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 992823 AACTTTAAAATTTTGTAAAGTTACA 992847 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 6761132 AACTTTAAAATTTTGTAAAGTTACA 6761108 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 11670826 AACTTTAAAATTTTGTAAAATTACA 11670802 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 60.8 bits (66), Expect = 4e-07 Identities = 109/157 (69%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 872 AACTCCGTGGCTAATAGTCCTCTTCCATGTACCATGGTATAACAGTAACAATGCCCATCA 931 |||||| ||||| ||||| || | || ||||||||||||||| ||||| |||| | Sbjct 19374248 AACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTA 19374307 Query 932 ACATGAAGGTGATGAAATGATGGCTGA-AATGGAGCCTTTGCTTTATGCGAGCGGTGTTG 990 ||||| || |||| | ||| | || | | | || || ||| |||| Sbjct 19374308 TATGGAAGGAGAAAGCATGA-GAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTG 19374366 Query 991 ATATTGTATTTACTGGTCATGTCCATGCTTATGAACG 1027 | ||||| ||| |||||||||| ||||| ||||| || Sbjct 19374367 ACATTGTTTTTGCTGGTCATGTTCATGCCTATGAGCG 19374403 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 490522 AACTTTAAAATTTTGTAAAATTACA 490546 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1369 AAATAGTCCATTAAATATAGAAATC 1393 ||||||| ||||||||||| ||||| Sbjct 21988651 AAATAGTTCATTAAATATATAAATC 21988627 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 51.8 bits (56), Expect = 2e-04 Identities = 36/41 (88%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 987 GTTGATATTGTATTTACTGGTCATGTCCATGCTTATGAACG 1027 |||||| | |||||| |||||||||| ||||||||||| || Sbjct 24737333 GTTGATGTGGTATTTGCTGGTCATGTTCATGCTTATGAGCG 24737373 Score = 44.6 bits (48), Expect = 0.031 Identities = 51/69 (74%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1055 AGATCCATGTGGTCCCGTACACATTACCATAGGTGATGGAGGAAACAGAGAAGGATTGGC 1114 ||||| || | || ||| |||| ||||| ||||||||||| ||| ||||| || || Sbjct 24737784 AGATCAATCAGCGCCTGTATACATAACCATTGGTGATGGAGGGAACCTCGAAGGCTTAGC 24737843 Query 1115 TCGCAAGTA 1123 |||||| Sbjct 24737844 AACCAAGTA 24737852 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 635 GGTGACACAGGGAAACCATGAGAAAGAGAG 664 |||| |||||||||||| |||||||| || Sbjct 18934511 GGTGTTACAGGGAAACCACGAGAAAGAAAG 18934482 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 939 GGTGATGAAATGATGGCTGAAATGG 963 ||||||| ||||||||||||| ||| Sbjct 20575962 GGTGATGGAATGATGGCTGAATTGG 20575986 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 51.8 bits (56), Expect = 2e-04 Identities = 36/41 (88%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 987 GTTGATATTGTATTTACTGGTCATGTCCATGCTTATGAACG 1027 |||||| | |||||| | |||||||| |||||||||||||| Sbjct 5532533 GTTGATGTGGTATTTGCAGGTCATGTTCATGCTTATGAACG 5532493 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 642 CAGGGAAACCATGAGAAAGAGAGTATT 668 ||| |||||||||||||| |||||||| Sbjct 1751689 CAGAGAAACCATGAGAAA-AGAGTATT 1751664 Score = 37.4 bits (40), Expect = 4.6 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 725 GGAAAGTGGGTCAAATTCA-AATCTTTATT 753 |||||| |||||||||||| ||||||||| Sbjct 7298780 GGAAAGGGGGTCAAATTCATGATCTTTATT 7298751 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1505 CTTTGCTTTGTGTTGTTTTTCCCACTATTT 1534 |||||||||||||| ||||| || | |||| Sbjct 38437145 CTTTGCTTTGTGTTCTTTTTGCCTCAATTT 38437174 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 50.0 bits (54), Expect = 7e-04 Identities = 136/207 (66%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 824 TCAATACAGCTGGTTAAAGGCTGATCTCTCGAAGGTGGACCGAGAAAGAACTCCGTGGCT 883 |||||||| ||| | || || ||| | || || | |||| |||||| ||||| Sbjct 7757946 TCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCTGAAACTCCATGGCT 7758005 Query 884 AATAGTCCTCTTCCATGTACCATGGTATAACAGTAACAATGCCCATCAACATGAAGGTGA 943 ||||| || | || ||||||||||||||| ||||| |||| ||||| || Sbjct 7758006 TATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTTTATGGAAGGAGA 7758065 Query 944 TGAAATGA---TGGCTGAAATGGAGCCTTTGCTTTATGCGAGCGGTGTTGATATTGTATT 1000 |||| ||||| | || | | | || || ||| ||||| ||||| || Sbjct 7758066 AAGCATGAGAGTGGCT---TTTGAATCCTGGTTTGTTGAAAGCAAAGTTGACATTGTGTT 7758122 Query 1001 TACTGGTCATGTCCATGCTTATGAACG 1027 | |||||||| ||||| ||||| || Sbjct 7758123 AGCCGGTCATGTTCATGCCTATGAGCG 7758149 Score = 39.2 bits (42), Expect = 1.3 Identities = 47/64 (73%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 1061 ATGTGGTCCCGTACACATTACCATAGGTGATGGAGGAAACAGAGAAGGATTGGCTCGCAA 1120 || || ||| || |||| ||||| || ||||||||||| |||||| ||| ||| Sbjct 28098804 ATCTGCTCCTGTTTACATAACCATTGGAGATGGAGGAAATCTTGAAGGACTGGTGACCAA 28098863 Query 1121 GTAC 1124 |||| Sbjct 28098864 GTAC 28098867 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1152 TTCAGGGAAGCAAGCTTTGGACATG 1176 ||| |||||||||||||||| |||| Sbjct 7758533 TTCCGGGAAGCAAGCTTTGGGCATG 7758557 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 406 GACCTGAGTTCCATTTGAAAACACCACCAG 435 ||| || |||| ||||||||||| |||||| Sbjct 16615952 GACATGCGTTCGATTTGAAAACATCACCAG 16615981 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 33955961 AACTTTAAAATTTTGTAAAGTTACA 33955937 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 48.2 bits (52), Expect = 0.003 Identities = 34/39 (87%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 987 GTTGATATTGTATTTACTGGTCATGTCCATGCTTATGAA 1025 |||||| | || ||| |||| |||||||||||||||||| Sbjct 40280682 GTTGATGTAGTCTTTGCTGGCCATGTCCATGCTTATGAA 40280644 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 1317 AGGAAAATGCTCTTGGAACCT-TAATT 1342 ||||||||||| ||||||||| ||||| Sbjct 12976802 AGGAAAATGCTATTGGAACCTATAATT 12976776 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 14233476 AACTTTAAAATTTTGTAAAGTTACA 14233500 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 1430 ATCACACCATTGAAGAAGATTTTCACCAACTCTATAGA 1467 ||||| | | ||| ||||||||| |||||||||||| Sbjct 39549270 ATCACTCAAGAGAATAAGATTTTCTACAACTCTATAGA 39549233 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 44.6 bits (48), Expect = 0.031 Identities = 65/92 (71%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1008 CATGTCCATGCTTATGAACGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGT 1067 || || ||||||||||| |||| ||| | || | || || || |||| ||||||| Sbjct 18698788 CAGGTGCATGCTTATGAGCGCATGAATAGAGTTTATAACTATACATTAGATTCATGTGGA 18698847 Query 1068 CCCGTACACATTACCATAGGTGATGGAGGAAA 1099 || || || | || | || ||||| ||||| Sbjct 18698848 CCTGTCTACTTAACAGTTGGAGATGGTGGAAA 18698879 Score = 44.6 bits (48), Expect = 0.031 Identities = 69/95 (73%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 1007 TCATGTCCATGCTTATGAACGCACGAAACGTGTCAACAATGGTA-AATC-AGATCCATGT 1064 ||| || ||||| ||||| | || || || || | || || |||| |||||||||| Sbjct 20775806 TCAGGTTCATGCCTATGAGAGGACAAATCGAGTGTATAAC--TACAATCTAGATCCATGT 20775749 Query 1065 GGTCCCGTACACATTACCATAGGTGATGGAGGAAA 1099 ||| |||| | ||||| | |||||||| || || Sbjct 20775748 GGTGCCGTTTATATTACTGTTGGTGATGGGGGTAA 20775714 Score = 42.8 bits (46), Expect = 0.11 Identities = 25/26 (96%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 502 TAGATCATATTGATCAATGCAAATAT 527 |||||||||||||||||| ||||||| Sbjct 22977023 TAGATCATATTGATCAATTCAAATAT 22976998 Score = 42.8 bits (46), Expect = 0.11 Identities = 25/26 (96%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 502 TAGATCATATTGATCAATGCAAATAT 527 |||||||||||||||||| ||||||| Sbjct 23861142 TAGATCATATTGATCAATTCAAATAT 23861167 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 655 AGAAAGAGAGTATTCCTTTTATAGTTGAT 683 ||||||||||||||| |||| | |||||| Sbjct 8189342 AGAAAGAGAGTATTCGTTTTGTTGTTGAT 8189314 Score = 37.4 bits (40), Expect = 4.6 Identities = 33/41 (80%), Gaps = 4/41 (10%) Strand=Plus/Minus Query 1337 TTAATTATATCCATAAAGTGAGAATTT----CAGTAAAATA 1373 ||||||||||| |||||||| |||| |||||||||| Sbjct 4619042 TTAATTATATCGATAAAGTGGTGATTTAATACAGTAAAATA 4619002 Score = 37.4 bits (40), Expect = 4.6 Identities = 33/41 (80%), Gaps = 4/41 (10%) Strand=Plus/Minus Query 1337 TTAATTATATCCATAAAGTGAGAATTT----CAGTAAAATA 1373 ||||||||||| |||||||| |||| |||||||||| Sbjct 4851826 TTAATTATATCGATAAAGTGGTGATTTAATACAGTAAAATA 4851786 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 11363416 AACTTTAAAATTTTGTAAAATTACA 11363440 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 22094176 AACTTTAAAATTTTGTAAAATTACA 22094152 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 22169612 AACTTTAAAATTTTGTAAAATTACA 22169588 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 236 GTCTCCTTCATTTGTTGAATATG 258 ||||||| ||||||||||||||| Sbjct 34774052 GTCTCCTCCATTTGTTGAATATG 34774074 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 39773499 AACTTTAAAATTTTGTAAAATTACA 39773475 >Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 Length=1158772 Score = 41.0 bits (44), Expect = 0.38 Identities = 40/52 (77%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 1055 AGATCCATGTGGTCCCGTACACATTACCATAGGTGATGGAGGAAACAGAGAA 1106 ||||||||||||||| ||| | || || | || ||||| || || ||||| Sbjct 670700 AGATCCATGTGGTCCGGTATATATCACAGTTGGAGATGGGGGTAATCGAGAA 670751 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 41.0 bits (44), Expect = 0.38 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 934 ATGAAGGTGATGAAATGATGGCTGAAATGGAG 965 ||| |||||||||||| |||| ||| |||||| Sbjct 4392107 ATGGAGGTGATGAAATAATGGTTGATATGGAG 4392076 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 4771517 AACTTTAAAATTTTGTAAAGTTACA 4771541 Score = 37.4 bits (40), Expect = 4.6 Identities = 33/41 (80%), Gaps = 4/41 (10%) Strand=Plus/Minus Query 3 ATCTGAAAGAAAAAGCTCGCAGAGATGGAAAAATGGGGGAT 43 ||| ||||||||||| || |||| ||||||||||| || Sbjct 7657671 ATCCGAAAGAAAAAGGTCACAGA----GAAAAATGGGGAAT 7657635 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 14955855 AACTTTAAAATTTTGTAAAGTTACA 14955879 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 41.0 bits (44), Expect = 0.38 Identities = 46/57 (81%), Gaps = 5/57 (9%) Strand=Plus/Plus Query 1258 AAGTTTGGTTAAACTCTCTTGTGAACTCCGGATGCTTGAAGAAAA-GGCCTCAAGAA 1313 |||||||||||||||||| || ||| ||| | |||| || |||| || ||||||| Sbjct 15131788 AAGTTTGGTTAAACTCTCATG-GAA-TCC--AAGCTTTAACAAAACTGCTTCAAGAA 15131840 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1369 AAATAGTCCATTAAATATAGAAATC 1393 ||||||| ||||||||||| ||||| Sbjct 10546175 AAATAGTTCATTAAATATATAAATC 10546151 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1369 AAATAGTCCATTAAATATAGAAATC 1393 ||||||| ||||||||||| ||||| Sbjct 26240812 AAATAGTTCATTAAATATATAAATC 26240788 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 41.0 bits (44), Expect = 0.38 Identities = 46/57 (81%), Gaps = 5/57 (9%) Strand=Plus/Minus Query 1258 AAGTTTGGTTAAACTCTCTTGTGAACTCCGGATGCTTGAAGAAAA-GGCCTCAAGAA 1313 |||||||||||||||||| || ||| ||| | |||| || |||| || ||||||| Sbjct 26198644 AAGTTTGGTTAAACTCTCATG-GAA-TCC--AAGCTTTAACAAAACTGCTTCAAGAA 26198592 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 5 CTGAAAGAAAAAGCTCGCAGAGATGGAAAAA 35 || |||||||||||| || ||||||||||| Sbjct 6383398 CTCAAAGAAAAAGCTAGCCAAGATGGAAAAA 6383428 Score = 39.2 bits (42), Expect = 1.3 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 227 TGACAAATCGTCTCCTTCATTTGTTGAATATGGA 260 ||||||||||| |||| ||||| ||| | ||||| Sbjct 27626393 TGACAAATCGTTTCCTGCATTTCTTGCAGATGGA 27626426 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 5327355 AACTTTAAAATTTTGTAAAATTACA 5327379 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 11321321 AACTTTAAAATTTTGTAAAGTTACA 11321297 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.3 Identities = 68/99 (69%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1008 CATGTCCATGCTTATGAACGCACGAAACGTGTCAACAATGGTAAATCAGATCCATGTGGT 1067 || || ||||||||||| | | || || || | || || | ||||||||||||| Sbjct 10563633 CAGGTTCATGCTTATGAGAGGTCAAATCGAGTTTATAACTACAATTTAGATCCATGTGGT 10563692 Query 1068 CCCGTACACATTACCATAGGTGATGGAGGAAACAGAGAA 1106 || || | || || | || ||||| || || ||||| Sbjct 10563693 CCTGTTTATATCACAGTTGGAGATGGGGGTAATCGAGAA 10563731 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 2144720 AACTTTAAAATTTTGTAAAATTACA 2144696 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 8246302 AACTTTAAAATTTTGTAAAGTTACA 8246326 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1089 GATGGAGGAAACAGAGAAGGATTGG 1113 ||||||||||||||| | ||||||| Sbjct 11275068 GATGGAGGAAACAGATATGGATTGG 11275092 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 642 CAGGGAAACCATGAGAAAGAGAG 664 ||||||||||| ||||||||||| Sbjct 17231180 CAGGGAAACCACGAGAAAGAGAG 17231202 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1257 GAAGTTTGGTTAAACTCTCTTGTGA 1281 |||||||||||| ||| |||||||| Sbjct 18239175 GAAGTTTGGTTACACTGTCTTGTGA 18239151 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 20192825 AACTTTAAAATTTTGTAAAATTACA 20192849 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 605 TCAGCCTCTGGCAAGTGTAA 624 |||||||||||||||||||| Sbjct 30933373 TCAGCCTCTGGCAAGTGTAA 30933354 >Query1 on lcl|JrScfU0035| Query1 on lcl|JrScfU0035 Length=28324 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 21150 AACTTTAAAATTTTGTAAAGTTACA 21174 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1369 AAATAGTCCATTAAATATAGAAATC 1393 ||||||| ||||||||||| ||||| Sbjct 21648782 AAATAGTTCATTAAATATATAAATC 21648806 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1477 TCCAACTTTAAAATTTTGTAAAC 1499 ||||||||||||| ||||||||| Sbjct 28013768 TCCAACTTTAAAAATTTGTAAAC 28013790 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 33297882 AACTTTAAAATTTTGTAAAGTTACA 33297858 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 18420268 AACTTTAAAATTTTGTAAAGTTACA 18420244 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 20633847 AACTTTAAAATTTTGTAAAGTTACA 20633871 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 373069 AACTTTAAAATTTTGTAAAATTACA 373093 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 673 TTATAGTTGATGAATTTGTGTCTTT 697 |||||||||||| |||||||| ||| Sbjct 24367413 TTATAGTTGATGTATTTGTGTGTTT 24367389 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 7105995 AACTTTAAAATTTTGTAAAATTACA 7105971 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 10795261 AACTTTAAAATTTTGTAAAATTACA 10795237 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1480 AACTTTAAAATTTTGTAAACTTGCA 1504 ||||||||||||||||||| || || Sbjct 29247046 AACTTTAAAATTTTGTAAAGTTACA 29247022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807885865326 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2