BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1535 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr5D 192 9e-47 lcl|Jr1D 55.4 2e-05 lcl|Jr6D 50.0 7e-04 lcl|Jr3S 42.8 0.11 lcl|Jr8S 41.0 0.38 lcl|Jr7S 41.0 0.38 lcl|Jr3D 41.0 0.38 lcl|Jr8D 39.2 1.3 lcl|Jr7D 39.2 1.3 lcl|Jr4S 39.2 1.3 lcl|Jr4D 39.2 1.3 lcl|Jr2S 39.2 1.3 lcl|Jr2D 39.2 1.3 lcl|Jr1S 39.2 1.3 lcl|Jr6S 37.4 4.6 lcl|Jr5S 37.4 4.6 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 192 bits (212), Expect = 9e-47 Identities = 391/576 (68%), Gaps = 6/576 (1%) Strand=Plus/Minus Query 541 GCTGGTGACCTAGGCCAAACCGATTGGACCGTAAGAACATTAGATCAGAT--ACGGAAAC 598 || || ||||| || ||||| || ||||||| ||| || | || || | | || Sbjct 1112195 GCAGGAGACCTGGGGCAAACTGAATGGACCGCTTCAACCCTACAACACATCGATAGTAA- 1112137 Query 599 GGGACTTCGATGTCTTCCTCCTTCCCGGTGACCTCTCCTACGCAGACACCCACCAGCCAC 658 ||||| |||||| || | | ||||| || | || ||||| || ||| ||||| | Sbjct 1112136 -GGACTACGATGTGTTTTTGTTACCCGGAGATTTATCATACGCCGATGGCCAACAGCCCC 1112078 Query 659 TTTGGGACTCCTTTGGCCGCCTCTTAGAGACTTTAGCTAGCACCCGCCCGTGGATGGTCA 718 |||||||||| || || ||||| | ||| | | || | | |||||| |||||||| | Sbjct 1112077 TTTGGGACTCGTTCGGACGCCTAGTTGAGCCATACGCGACCCGCCGCCCATGGATGGTGA 1112018 Query 719 CGGAGGGGAACCACGAGATCGAGTCTTTCCCAACCAATGACCACATAAGCTTCAAGTCAT 778 | || || ||||||||||| ||| | |||||| || ||| | |||||| || | Sbjct 1112017 CCGAAGGCAACCACGAGATTGAGACCATCCCAATCATCCACCCCTACGGCTTCAGATCCT 1111958 Query 779 ACAATGCGCGATGGCTCATGCCTCACGCTGAGAGTCTCTCTCACTCCAATCTTTACTATT 838 ||||||| | |||| ||||| |||| || ||| || ||| || | || || | Sbjct 1111957 ACAATGCCAGGTGGCGAATGCCGCACGAGGAAAGTGGATCGACCTCAAACTTGTATTACT 1111898 Query 839 CTTTTGATGTAGCAGGCGTCCACACCGTTATGCTTGGTTCTTACACCCCCTATGAGTCCC 898 | ||||| || || || |||| | ||| | || ||||| || | ||| | Sbjct 1111897 CATTTGACGTTGCTGGGACTCACATTATAATGTTAGGATCTTATACTGAGTTTGATGCTG 1111838 Query 899 ACTCCGATCAGTATCATTGGCTCCAAGCTGATTTAAGAAAGGTTGACCGTAAAAAGACGC 958 |||| |||||| | ||||| | || ||||| || |||||| | || || |||| Sbjct 1111837 ACTCGTCTCAGTACAAGTGGCTTGAGGCCGATTTGGCCAACGTTGACAGGAAGAAAACGC 1111778 Query 959 CATGGTTGGTGGTGGTGATGCACACGCCATGGTACAGTACAAACAAGGCGCATTATGGTG 1018 ||||| | | ||| | |||| | || ||||| | || || | || ||| | |||| Sbjct 1111777 CATGGATCTTTGTGCTCTTGCATGCCCCCTGGTATAACACTAATACAGCACATCAAGGTG 1111718 Query 1019 AAGGAGAGAAAATGAGAAGTGCCCTGG-AGAGTTTGCTCTATCGTGCTCAAGTAGACGTC 1077 ||||||| | ||||||| || ||| |||| ||||| ||| || | || ||||| Sbjct 1111717 AAGGAGAAAGCATGAGAAAAGCTATGGAAGAG-TTGCTGTATAAGGCACGGGTCGACGTG 1111659 Query 1078 GTTTTTGCCGGCCACGTTCATACCTACGAACGTTTC 1113 |||||||| ||||| |||||| | || ||||| ||| Sbjct 1111658 GTTTTTGCAGGCCATGTTCATGCATATGAACGATTC 1111623 Score = 132 bits (146), Expect = 8e-29 Identities = 379/580 (65%), Gaps = 16/580 (3%) Strand=Plus/Minus Query 541 GCTGGTGACCTAGGCCAAACCGATTGGACCGTAAGAACATTAGATCA----GATACGGAA 596 || || |||||||| || || || ||||| | | ||| ||| || |||| ||| Sbjct 1123986 GCAGGCGACCTAGGACAGACGGAATGGACTGCATCAACCCTAGCACATGTTGATAGTGAA 1123927 Query 597 ACGGGACTTCGATGTCTTCCTCCTTCCCGGTGACCTCTCCTACGCAGACACCCACCAGCC 656 |||| ||| || || | | || ||||| | || ||||| | ||| || || Sbjct 1123926 ----GACTACGACGTGTTTTTGTTACCTGGTGATTTATCATACGCCAATGGCCAGCAACC 1123871 Query 657 ACTTTGGGACTCCTTTGGCCGCCTCTTAGAGACTTTAGCTAGCACCCGCCCGTGGATGGT 716 || |||||||| || |||||||| | ||| | | || ||| |||||| |||||||| Sbjct 1123870 TCTGTGGGACTCTTTCGGCCGCCTAGTGGAGCCCTACGCGAGCCGCCGCCCATGGATGGT 1123811 Query 717 CACGGAGGGGAACCACGAGATCGAG----TCTTTCCCAACCAATGACCACATAAGCTTCA 772 || || ||||||||||| |||||| | | ||| |||| || || | |||||| Sbjct 1123810 GACCGAAGGGAACCACGACATCGAGATCATGATACCCGACCAT---CCCCA-AGGCTTCA 1123755 Query 773 AGTCATACAATGCGCGATGGCTCATGCCTCACGCTGAGAGTCTCTCTCACTCCAATCTTT 832 | | |||||| | ||||| ||||| ||| |||||| || | || || | | Sbjct 1123754 CGGCCTACAATAGCAGGTGGCTGATGCCATACGAAGAGAGTGGATCCAAATCGAACTTAT 1123695 Query 833 ACTATTCTTTTGATGTAGCAGGCGTCCACACCGTTATGCTTGGTTCTTACACCCCCTATG 892 | || ||||||||||| || || |||| | ||| | ||||||||||| | | Sbjct 1123694 ATTACTCTTTTGATGTTGCTGGGACTCACATAATAATGTTGGGTTCTTACACGAAGTTTT 1123635 Query 893 AGTCCCACTCCGATCAGTATCATTGGCTCCAAGCTGATTTAAGAAAGGTTGACCGTAAAA 952 | | || |||||| | ||||| | ||||||| | || | | || | Sbjct 1123634 ATGTGGAGTCGCCTCAGTACAAATGGCTGGAGTCTGATTTGGCTCAAGTCAATAGGAAGA 1123575 Query 953 AGACGCCATGGTTGGTGGTGGTGATGCACACGCCATGGTACAGTACAAACAAGGCGCATT 1012 |||| || ||| | | || || |||| |||| ||||| | ||| || | || ||| Sbjct 1123574 AGACCCCCTGGGTTCTTGTTCTGTTGCATGCGCCTTGGTATAATACTAATACAGCTCATC 1123515 Query 1013 ATGGTGAAGGAGAGAAAATGAGAAGTGCCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAG 1072 | || |||||||| | |||||| | |||||| || | ||| || | || | Sbjct 1123514 AAGGCGAAGGAGAAATCATGAGACAAACAATGGAGAAGCTGTTGTATAAGGCACGGGTCG 1123455 Query 1073 ACGTCGTTTTTGCCGGCCACGTTCATACCTACGAACGTTT 1112 | | |||||||| || || |||||| | || |||||||| Sbjct 1123454 ATTTGGTTTTTGCTGGACATGTTCATGCATATGAACGTTT 1123415 Score = 104 bits (114), Expect = 4e-20 Identities = 247/371 (67%), Gaps = 2/371 (1%) Strand=Plus/Plus Query 650 ACCAGCCACTTTGGGACTCCTTTGGCCGCCTCTTAGAGACTTTAGCTAGCACCCGCCCGT 709 ||||||| ||||||| || || ||| | || | ||| | | || ||| || || | Sbjct 1142257 ACCAGCCTTTTTGGGATTCATTCGGCAGGCTTGTGGAGCCACTGGCAAGCCAGCGGCCTT 1142316 Query 710 GGATGGTCACGGAGGGGAACCACGAGATCGAGTCTTTCCCAACCAATGACCACATAAGCT 769 ||||||| || | || ||||||||| | ||| | || || || || | || Sbjct 1142317 GGATGGTAACCCAAGGCAACCACGAGGTTGAGAAGATTCCGGTCATCCACTCCAAACCCT 1142376 Query 770 TCAAGTCATACAATGCGCGATGGCTCATGCCTCACGCTGAGAGTCTCTCTCACTCCAATC 829 ||| | |||||||| |||||| |||||| | ||||| || ||||||| | Sbjct 1142377 TCACAGCCTACAATGCAAGATGGCGCATGCCATTTGAACAGAGTGGATCGGACTCCAACC 1142436 Query 830 TTTACTATTCTTTTGATGTAGCAGGCGTCCACACCGTTATGCTTGGTTCTTACACCCCCT 889 | |||||||||||| ||||||| || || || | | ||| | |||| ||||| | Sbjct 1142437 TATACTATTCTTTTAATGTAGCTGGGGTTCATATTATCATGTTGAGTTCGTACACGGATT 1142496 Query 890 ATGAGTCCCA-CTCCGATCAGTATCATTGGCTCCAAGCTGATTTAAGAAAGGTTGACCGT 948 ||| ||| | || | |||||| | ||| | | || ||| | | || |||| || Sbjct 1142497 TTGA-TCCTAGTTCACAACAGTATAAGTGGTTAGAGGCAGATATGGGGCAGATTGATCGG 1142555 Query 949 AAAAAGACGCCATGGTTGGTGGTGGTGATGCACACGCCATGGTACAGTACAAACAAGGCG 1008 |||| || |||||| | || ||| | | || |||||||||||| ||| || | || Sbjct 1142556 AAAATAACTCCATGGATAGTAGTGCTTGTTCATGCGCCATGGTACAATACGAATACTGCT 1142615 Query 1009 CATTATGGTGA 1019 ||| | ||||| Sbjct 1142616 CATCAGGGTGA 1142626 Score = 102 bits (112), Expect = 1e-19 Identities = 326/503 (65%), Gaps = 6/503 (1%) Strand=Plus/Plus Query 616 CTCCTTCCCGGTGACCTCTCCTACGCAGACACCCACCAGCCACTTTGGGACTCCTTTGGC 675 || ||||| || ||| | || || ||||| | | ||||| | ||||| || ||||| Sbjct 1132897 CTACTTCCAGGAGACTTATCGTATGCAGATCTCAATCAGCCTTTATGGGATTCATTTGGA 1132956 Query 676 CGCCTCTTAGAGACTTTAGCTAGCACCCGCCCGTGGATGGTCACGGAGGGGAACCACGAG 735 | || | ||| | | |||||| | || |||||||| ||| | || ||||| ||| Sbjct 1132957 AGGCTTGTCGAGCCACTGGCTAGCCAGAGGCCTTGGATGGTGACGCAAGGCAACCATGAG 1133016 Query 736 ATCGAGTCTTTCCCAACCAATGACCACATAAGCTTCAAGTCATACAATGCGCGATGGCTC 795 || ||| ||||| || || || | ||||| | |||||||| |||||| | Sbjct 1133017 ATTGAGAAGATCCCACTCATCCACAACGAACCCTTCACAGCCTACAATGCAAGATGGCGC 1133076 Query 796 ATGCCTCACGCTGAGAGTCTCTCTCACTCCAATCTTTACTATTCTTTTGATGTAGCAGGC 855 ||||| || ||||| ||| || ||||| | ||||||||| |||| || || Sbjct 1133077 ATGCCATTCGAACAGAGTGGCTCGGGATCAAATCTCTTCTATTCTTTCAATGTCGCTGGA 1133136 Query 856 GTCCACACCGTTATGCTTGGTTCTTACACCCCCTATGAGTCCCACTCCGATCAGTATCAT 915 || || | | ||| | ||||| || || | ||| | | || | |||| | Sbjct 1133137 GTGCATGTCATCATGTTGGGTTCGTATACAGATTTTGATCCTAAATCGGCACAGTTCAAG 1133196 Query 916 TGGCTCCAAGCTGATTTAAGAAAGGTTGACCGTAAAAAGACGCCATGGTTGGTGGTGGTG 975 ||| | | || || || | ||| |||| | || || || || ||| || ||| | Sbjct 1133197 TGGTTAGAGGCAGACTTGCGGAAGATTGATAGGAACAAAACTCCGTGGACAGTAGTGCTT 1133256 Query 976 ATGCACACGCCATGGTACAGTACAAACAAGGCGCATTATGGTGAAGGAGAGAAAAT-GA- 1033 || || |||| ||||||| | | || | || ||| | ||||| |||| || || Sbjct 1133257 ATTCATGCGCCCTGGTACAATTCTAATACAGCTCATCAGGGTGAGAAAGAGTCGATTGAC 1133316 Query 1034 --GAAGTG--CCCTGGAGAGTTTGCTCTATCGTGCTCAAGTAGACGTCGTTTTTGCCGGC 1089 |||| || |||| | || || || || |||| || || || ||||||||||| Sbjct 1133317 ATGAAGGCATCCATGGAAGGGTTACTTTACCGAGCTCGTGTGGATGTTGTTTTTGCCGGA 1133376 Query 1090 CACGTTCATACCTACGAACGTTT 1112 || || ||| |||| || || || Sbjct 1133377 CATGTACATGCCTATGAGCGCTT 1133399 Score = 73.4 bits (80), Expect = 6e-11 Identities = 199/300 (66%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 250 CAGGTGCACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACAGACGAC 309 ||||| || || ||||||||||| | || || || |||| | | | || || | | Sbjct 1113639 CAGGTACATATTTCATTGGCGGGGATCGATCATATACGAGTTTCGTGGATTACTGAGGCC 1113580 Query 310 TTGAATGTGGCATCGATGGTGGAGTACGGTAAA-CATCC--AAAAAAGTATGACaaaaaa 366 ||| | ||| | ||||| ||||| ||| |||| |||| | ||| || | Sbjct 1113579 AAACATGCGAAATCAGTCGTGGAATACGGGAAAGAATCCGGAAAATACAATG-CATTGGA 1113521 Query 367 aCGGCCGGAGAATCCACTTCTTACACATACTTCTTCTACAACTCTGGAAAGATCCATCAT 426 | |||| ||| || || || || ||||| || ||| |||| || ||||||| || Sbjct 1113520 A--ACCGGTGAACACAAATCGTATACGTACTTTTTTTACCACTCAGGCGAGATCCACCAC 1113463 Query 427 GTCAAGATTGGTCCTCTTAAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGGT 486 || |||||||| || | | |||| ||||| || | ||| | ||||| ||| || Sbjct 1113462 GTTAAGATTGGACCCTTGGAGCCCAGCACCACCTATTTCTACAGGTGTGGAGGTTCGGGC 1113403 Query 487 GACGAATTTTCTTTCAAAACTCCCCCATCCAAATTTCCAATCGAATTCGCCGTCGCTGGT 546 || ||||| |||| ||| || || || |||||| || ||||| || || | |||| Sbjct 1113402 CCTGAGTTTTCCTTCAGAACACCGCCTTCAGGATTTCCCATTGAATTTGCAGTTGTTGGT 1113343 Score = 73.4 bits (80), Expect = 6e-11 Identities = 199/301 (66%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 250 CAGGTGCACATATCATTGGCGGGTAAAGACCACATGAGAGTAACATACACAACAGACGAC 309 |||||||| ||||| ||| || | ||| ||||||||||| |||| | || || ||| Sbjct 1125390 CAGGTGCATATATCTCTGGTAGGGAGAGATCACATGAGAGTTACATGGATTACTGATGAC 1125331 Query 310 TTGAATGTGGCATCGATGGTGGAGTACGGTAAACATCCAAA--AAAGTATGA--Caaaaa 365 | | | || || ||||| || || ||| ||| || ||||| |||| Sbjct 1125330 AAACAAGCATCTTCAATTGTGGAATATGG--AACGGAGAAAGGGAAATATGATGCAAAGG 1125273 Query 366 aaCGGCCGGAGAATCCACTTCTTACACATACTTCTTCTACAACTCTGGAAAGATCCATCA 425 | || |||||| || || || |||||| || | || || |||||||| || Sbjct 1125272 CAAGG--GGAGAACATACAGAATATACTTACTTCAAGTATAGTTCAGGTAAGATCCACCA 1125215 Query 426 TGTCAAGATTGGTCCTCTTAAACCCAACACCAAATACTATTACCGTTGTGGTGGTCACGG 485 |||||||| || | | |||| ||||| || | ||| | ||||| ||| || Sbjct 1125214 CACTAAGATTGGACCATTGGAGCCCAGCACCACCTATTTCTACAGATGTGGAGGTTCAGG 1125155 Query 486 TGACGAATTTTCTTTCAAAACTCCCCCATCCAAATTTCCAATCGAATTCGCCGTCGCTGG 545 |||||| || ||||| || ||||| || | |||||| || ||||| || || | ||| Sbjct 1125154 CCCCGAATTCTCCTTCAAGACACCCCCTTCGACATTTCCTATTGAATTTGCGGTGGTTGG 1125095 Query 546 T 546 | Sbjct 1125094 T 1125094 Score = 57.2 bits (62), Expect = 5e-06 Identities = 57/74 (77%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1123 TACAACAAGAAAGCCGATCCATGTGGACCAATGTACATAACCATTGGTGACGGTGGCAAC 1182 ||||| |||||| || ||||| ||| || | || |||||||| || ||||| ||| Sbjct 1142889 TACAATGGGAAAGCTGACAATTGTGGCCCAGTGCATATCACCATTGGCGATGGTGGAAAC 1142948 Query 1183 CGAGAAGGCCTTGC 1196 ||||||||||||| Sbjct 1142949 AGAGAAGGCCTTGC 1142962 Score = 53.6 bits (58), Expect = 6e-05 Identities = 49/62 (79%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 1139 ATCCATGTGGACCAATGTACATAACCATTGGTGACGGTGGCAACCGAGAAGGCCTTGCTT 1198 ||| |||||| || ||||| | || ||||||| || || ||||||||||| ||||| | Sbjct 1111482 ATCAATGTGGTCCGATGTATGTGACGGTTGGTGATGGCGGGAACCGAGAAGGGCTTGCAT 1111423 Query 1199 TA 1200 || Sbjct 1111422 TA 1111421 Score = 53.6 bits (58), Expect = 6e-05 Identities = 56/74 (76%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1123 TACAACAAGAAAGCCGATCCATGTGGACCAATGTACATAACCATTGGTGACGGTGGCAAC 1182 ||||| |||| | ||| ||||| || || | || |||||||| || ||||| ||| Sbjct 1133698 TACAATGGGAAAACTGATAATTGTGGTCCGGTGCATATCACCATTGGAGATGGTGGGAAC 1133757 Query 1183 CGAGAAGGCCTTGC 1196 || ||||||||||| Sbjct 1133758 CGCGAAGGCCTTGC 1133771 Score = 48.2 bits (52), Expect = 0.003 Identities = 80/116 (69%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1202 GGTTCAAAAAGCCTCAGTCACCTTTGTCGGAATTCCGTGAATCGAGTTTTGGACATGGGA 1261 ||||||| || || || ||| | ||| || || || | || |||||||||||| Sbjct 1110829 GGTTCAAGAACCCAACTTCCCCTCTCTCGTTGTTTCGGGAGGCAAGCTTTGGACATGGGC 1110770 Query 1262 GATTAAGGATTATAGACCATAAACGAGCACATTGGTCGTGGCATAGAAACAACGAC 1317 | || || | || | || | || ||||||||||| ||||| | ||||| ||| Sbjct 1110769 GTTTGAGTGTATTAAATCAAACACATGCACATTGGTCATGGCACCGCAACAATGAC 1110714 Score = 41.0 bits (44), Expect = 0.38 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 116 GTTTCTTAATTAGCTTTTCTCTCTTTTTCCTCTCTCCGT 154 ||||| ||| | ||||||||||||||| ||||||||| Sbjct 7011082 GTTTCATAAGTGCCTTTTCTCTCTTTTT--TCTCTCCGT 7011046 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 198 GCCTCGTCCTCTCTTCATTGTCTCTC 223 ||||| |||||||||||||||| ||| Sbjct 7335880 GCCTCATCCTCTCTTCATTGTCCCTC 7335905 Score = 39.2 bits (42), Expect = 1.3 Identities = 39/50 (78%), Gaps = 2/50 (4%) Strand=Plus/Minus Query 44 CCATCCCATCTTCTTCTCCTTCATCTTTCACCGACATCAACTCTTTGAAA 93 |||||||||||||||| | |||| |||| |||| ||| |||| ||| Sbjct 14904516 CCATCCCATCTTCTTCCCAAACATCATTCAAAGACA--AACACTTTCAAA 14904469 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 52 TCTTCTTCTCCTTCATCTTT 71 |||||||||||||||||||| Sbjct 13034464 TCTTCTTCTCCTTCATCTTT 13034483 Score = 37.4 bits (40), Expect = 4.6 Identities = 52/72 (72%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 91 AAAATGAAGAAGATGAAAATATTTGGTTTCTTAATTA--GCTTTTCTCTCTTTTTCCTCT 148 || |||||||||| |||||| | | ||| | || ||||| ||| | ||| || | Sbjct 25245933 AACATGAAGAAGAAGAAAATCTCAGCTTTTTGCTTTCCCGCTTTCTTCTTTCTTTGCTTT 25245992 Query 149 CTCCGTTTGTAT 160 ||||||||||| Sbjct 25245993 TTCCGTTTGTAT 25246004 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 55.4 bits (60), Expect = 2e-05 Identities = 69/95 (73%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 940 GTTGACCGTAAAAAGACGCCATGGTTGGTGGTGGTGATGCACACGCCATGGTACAGTACA 999 |||||| | || ||| ||||||||||| | | |||| | || |||||||| || Sbjct 20776418 GTTGACAGAGAAGTGACTCCATGGTTGGTAGCTGCATGGCACCCACCTTGGTACAGCACC 20776359 Query 1000 AACAAGGCGCATTATGGTGAAGGAGAGAAAATGAG 1034 ||||||||||||| | |||| |||| ||||| Sbjct 20776358 TACAAGGCGCATTACAGAGAAGCAGAGTGCATGAG 20776324 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/30 (90%), Gaps = 2/30 (7%) Strand=Plus/Plus Query 91 AAAATGAAGAAGATGAAAATATTTGGTTTC 120 ||||||||| ||||||||||||| ||||| Sbjct 13485424 AAAATGAAG--GATGAAAATATTTTGTTTC 13485451 Score = 39.2 bits (42), Expect = 1.3 Identities = 35/44 (80%), Gaps = 4/44 (9%) Strand=Plus/Minus Query 104 TGAAAAT----ATTTGGTTTCTTAATTAGCTTTTCTCTCTTTTT 143 ||||||| ||| |||||||||||| ||||||||| || || Sbjct 45465919 TGAAAATTGGAATTGGGTTTCTTAATTTTCTTTTCTCTATTATT 45465876 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 108 AATATTTGGTTTCTTAATTA-GCTTTT 133 |||| ||||||||||||||| |||||| Sbjct 21362876 AATAATTGGTTTCTTAATTATGCTTTT 21362850 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1503 ataaataaaaaaaaCTATATTGAATTGTTACAA 1535 |||||||||| | |||||||||||| ||| || Sbjct 43875741 ATAAATAAAATTATCTATATTGAATTTTTAAAA 43875709 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 909 GTATCATTGGCTCCAAGCTGATTTAAGAAA 938 ||||||||| || ||||||||||| |||| Sbjct 46801754 GTATCATTGATTCGAAGCTGATTTATGAAA 46801783 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 50.0 bits (54), Expect = 7e-04 Identities = 45/55 (82%), Gaps = 4/55 (7%) Strand=Plus/Minus Query 1138 GATCCATGTGGACCAATGT--ACATAACCATTGGTGACGGTGGCAACCGAGAAGG 1190 ||||| ||||| || ||| |||||||||||||||| || || ||| ||||||| Sbjct 36165758 GATCCTTGTGG--CACTGTCCACATAACCATTGGTGATGGAGGAAACAGAGAAGG 36165706 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 87 TTTGAAAATGAAGAAGATGAAAATAT 112 || |||||||||||||||||||| || Sbjct 7301005 TTCGAAAATGAAGAAGATGAAAAAAT 7300980 Score = 39.2 bits (42), Expect = 1.3 Identities = 34/40 (85%), Gaps = 3/40 (8%) Strand=Plus/Minus Query 112 TTTGGTTTCTTA-ATTAGCTTTTCTCTCTTTTTCCTCTCT 150 |||||||| ||| ||| ||| ||||||||||||||||| Sbjct 18726203 TTTGGTTTTTTAGATTTCCTT--CTCTCTTTTTCCTCTCT 18726166 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 1319 AGATGTCATCTATTGCCGATGAAGTATC 1346 || |||||||| |||||||||||||||| Sbjct 37123913 AGGTGTCATCT-TTGCCGATGAAGTATC 37123887 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 1319 AGATGTCATCTATTGCCGATGAAGTATC 1346 || |||||||| |||||||||||||||| Sbjct 37124316 AGGTGTCATCT-TTGCCGATGAAGTATC 37124290 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 42.8 bits (46), Expect = 0.11 Identities = 31/36 (86%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1156 TACATAACCATTGGTGACGGTGGCAACCGAGAAGGC 1191 ||||||||||||||||| || || |||| |||||| Sbjct 24737803 TACATAACCATTGGTGATGGAGGGAACCTCGAAGGC 24737838 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 85 TCTTTGAAAATGAAGAAGATGAAAATATT 113 || ||||| |||||||||||||||| ||| Sbjct 1693796 TCATTGAAGATGAAGAAGATGAAAACATT 1693824 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 89 TGAAAATGAAGAAGATGAAAATATTT 114 ||||| ||||||| |||||||||||| Sbjct 3132662 TGAAAGTGAAGAAAATGAAAATATTT 3132637 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 122 TAATTAGCTTTTCTCTCTTTTTCCTCTCTCC 152 |||| | | ||||||||||| |||||||||| Sbjct 5022792 TAATCACCGTTTCTCTCTTTCTCCTCTCTCC 5022762 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 47 TCCCATCTTCTTCTCCTTCATCTTT 71 |||||||||||||| |||| ||||| Sbjct 15063693 TCCCATCTTCTTCTTCTTCTTCTTT 15063669 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 129 CTTTTCTCTCTTTTTCCTCTCTCCGTTT 156 ||||||||||| |||||| || |||||| Sbjct 27728397 CTTTTCTCTCTATTTCCTTTCCCCGTTT 27728424 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 41.0 bits (44), Expect = 0.38 Identities = 48/62 (77%), Gaps = 5/62 (8%) Strand=Plus/Plus Query 91 AAAATGAAGAAGATGAAAATATTTGGTTTCTT--AATTAGCTTTTCTCTCTTTTTCCTCT 148 ||| | |||| |||||| | |||| |||||| ||| |||| |||||||| |||||| Sbjct 14585977 AAAGTTAAGATGATGAATAGATTT--TTTCTTTCAATCTTCTTT-CTCTCTTTCTCCTCT 14586033 Query 149 CT 150 || Sbjct 14586034 CT 14586035 Score = 41.0 bits (44), Expect = 0.38 Identities = 30/34 (88%), Gaps = 1/34 (3%) Strand=Plus/Minus Query 93 AATGAAGAAGATGAAAATATTTGG-TTTCTTAAT 125 |||||| ||||| ||||||||||| ||||| ||| Sbjct 16967161 AATGAAAAAGATAAAAATATTTGGATTTCTAAAT 16967128 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 93 AATGAAGAAGATGAAAATATTTGGTTTCTTAATTA 127 ||| ||||||||||||||| ||||| ||||||| Sbjct 12226800 AATAAAGAAGATGAAAATA--GGGTTTGTTAATTA 12226768 Score = 37.4 bits (40), Expect = 4.6 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 106 AAAATATTTGGTTTCTTAATTAGC-TTTTCTCTCTTTTT 143 ||||||||||| ||||||||| | |||||| ||| ||| Sbjct 3349433 AAAATATTTGG-TTCTTAATTTTCTTTTTCTTTCTCTTT 3349396 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 41.0 bits (44), Expect = 0.38 Identities = 34/41 (83%), Gaps = 3/41 (7%) Strand=Plus/Plus Query 98 AGAAGATGAAAATATTTGG---TTTCTTAATTAGCTTTTCT 135 |||||||||||| ||||| |||||| |||| ||||||| Sbjct 17726953 AGAAGATGAAAACTTTTGGTATTTTCTTCATTACCTTTTCT 17726993 Score = 39.2 bits (42), Expect = 1.3 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1439 TTATCTAATGTTTTGTAGaaaaataactcaaaaa 1472 |||| |||||||||||| |||| || | |||||| Sbjct 6914687 TTATGTAATGTTTTGTATAAAATTATCGCAAAAA 6914720 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 132 TTCTCTCTTTTTCCTCTCTCCGTTT 156 |||| ||||||| |||||||||||| Sbjct 419853 TTCTTTCTTTTTTCTCTCTCCGTTT 419829 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 41.0 bits (44), Expect = 0.38 Identities = 33/39 (85%), Gaps = 1/39 (3%) Strand=Plus/Plus Query 88 TTGAAAATGAAGAAGATGAAAATATTTGGTTTCTTAATT 126 |||||||||||||| ||||| || ||||||| ||| || Sbjct 2259604 TTGAAAATGAAGAATATGAATAT-CTTGGTTTATTATTT 2259641 Score = 41.0 bits (44), Expect = 0.38 Identities = 43/53 (81%), Gaps = 4/53 (8%) Strand=Plus/Minus Query 93 AATGAAGAAGATGAAAATATT-TGGTTTCTTAATTAGCTTTTCTCTCTTTTTC 144 ||||||| ||||| ||| || ||| || | ||||||||||||| || ||||| Sbjct 16692085 AATGAAG--GATGATAATTTTCTGGATT-TGAATTAGCTTTTCTTTCGTTTTC 16692036 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 343 CATCCAAAAAAGTATGACaaaaaaa 367 ||||||||||||||||| ||| ||| Sbjct 15634934 CATCCAAAAAAGTATGATAAAGAAA 15634910 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.3 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 127 AGCTTTTCTCTCTTTTTCCTCTCT 150 ||||||||||||| |||||||||| Sbjct 28405321 AGCTTTTCTCTCTCTTTCCTCTCT 28405344 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 120 CTTAATTAGCTTTTCTCTCTTTTTCCTCTCT 150 ||||||| |||||||| |||||||||||| Sbjct 33493184 CTTAATTTCTTTTTCTCTTTTTTTCCTCTCT 33493154 Score = 37.4 bits (40), Expect = 4.6 Identities = 35/45 (78%), Gaps = 5/45 (11%) Strand=Plus/Minus Query 92 AAATGAAGAAGAT-----GAAAATATTTGGTTTCTTAATTAGCTT 131 |||| |||||||| |||||||||| || |||||| ||||| Sbjct 8842285 AAATTAAGAAGATTTTGTGAAAATATTTTTTTCCTTAATAAGCTT 8842241 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 91 AAAATGAAGAAGATGAAAATATT 113 ||||||||||| ||||||||||| Sbjct 21571228 AAAATGAAGAAAATGAAAATATT 21571250 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 91 AAAATGAAGAAGATGAAAATATT 113 ||||||||||| ||||||||||| Sbjct 21700275 AAAATGAAGAAAATGAAAATATT 21700297 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 470 GTTGTGGTGGTCACGGTGACGAATTTTCTTTCAAAA 505 ||||| || |||| | ||| |||| ||||||||||| Sbjct 7890332 GTTGTTGTAGTCATGATGAAGAATGTTCTTTCAAAA 7890297 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 87 TTTGAAAATGAAGAAGATGAAAAT--ATTTGGTTT 119 ||||||||||| ||||||||| || |||||| || Sbjct 23266480 TTTGAAAATGAGGAAGATGAAGATAGATTTGGCTT 23266514 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 77 ACATCAACTCTTTGAAAATGAAGAAGATGAAAATA 111 ||||||| || |||| |||||||||||||||| Sbjct 6879907 ACATCAATATATTAAAAAAGAAGAAGATGAAAATA 6879873 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 47 TCCCATCTTCTTCTCCTTCATCTTTC 72 |||| ||||||||| ||||||||||| Sbjct 10480357 TCCCTTCTTCTTCTTCTTCATCTTTC 10480382 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1424 ACATTTAAGCTCTTGTTATCTAATGT 1449 ||||||| ||||||||||| |||||| Sbjct 16062079 ACATTTATGCTCTTGTTATTTAATGT 16062104 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 42 ATCCATCCCATCTTCTTCTCCTTCATCTT 70 |||| |||||||||||||| |||| |||| Sbjct 17146991 ATCCTTCCCATCTTCTTCTTCTTCTTCTT 17146963 Score = 39.2 bits (42), Expect = 1.3 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 87 TTTGAAAATGAAGAAGATGAAAAT 110 ||| |||||||||||||||||||| Sbjct 30661380 TTTAAAAATGAAGAAGATGAAAAT 30661403 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 47 TCCCATCTTCTTCTCCTTCATCTTTC 72 |||| ||||||||| ||||||||||| Sbjct 12956799 TCCCTTCTTCTTCTTCTTCATCTTTC 12956824 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 130 TTTTCTCTCTTTTTCCTCTCTCCGTT 155 || |||||||| |||||||||||||| Sbjct 31456201 TTCTCTCTCTTCTTCCTCTCTCCGTT 31456226 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 130 TTTTCTCTCTTTTTCCTCTCTCCGTT 155 || |||||||| |||||||||||||| Sbjct 31480894 TTCTCTCTCTTCTTCCTCTCTCCGTT 31480919 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 330 GGAGTACGGTAAACATCCAAAAA 352 |||||| |||||||||||||||| Sbjct 35399453 GGAGTAAGGTAAACATCCAAAAA 35399431 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 88 TTGAAAATGAAGAAGATGAAAAT 110 |||||||| |||||||||||||| Sbjct 39452472 TTGAAAATAAAGAAGATGAAAAT 39452450 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 1.3 Identities = 40/50 (80%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 1436 TTGTTATCTAATGTTTTGTAGaaa-aataactcaaaaagtaaatttatat 1484 |||||||||||| | || |||||| ||||| | ||||| | ||| |||| Sbjct 20399861 TTGTTATCTAAT-TATTTTAGAAATAATAAATAAAAAATAAGATTCATAT 20399909 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 349 AAAAAGTATGACaaaaaaaC 368 |||||||||||||||||||| Sbjct 6207860 AAAAAGTATGACAAAAAAAC 6207879 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 125 TTAGCTTTTCTCTCTTTTTCCTCTCT-CCGTTTGTAT 160 || |||| |||||||||||| ||||| |||| |||| Sbjct 14058596 TTTGCTTGTCTCTCTTTTTCTTCTCTAGCGTTGGTAT 14058632 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 385 TCTTACACATACTTCTTCTACAACTCTGGAAAG 417 || |||| ||| ||| ||||||||||| ||||| Sbjct 15049587 TCGTACAAATATTTCATCTACAACTCTTGAAAG 15049555 Score = 37.4 bits (40), Expect = 4.6 Identities = 39/49 (80%), Gaps = 7/49 (14%) Strand=Plus/Plus Query 80 TCAACTCTTTGAAAATGAAGAA-----GATGAAAATATTTGG-TTTCTT 122 ||||||||||||||||| |||| ||| || || ||||| |||||| Sbjct 27267923 TCAACTCTTTGAAAATG-AGAATTCATGATCAAGATTTTTGGATTTCTT 27267970 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 44 CCATCCCATCTTCTTCTCCT 63 |||||||||||||||||||| Sbjct 327311 CCATCCCATCTTCTTCTCCT 327292 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 52 TCTTCTTCTCCTTCATCTTT 71 |||||||||||||||||||| Sbjct 14669695 TCTTCTTCTCCTTCATCTTT 14669714 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 52 TCTTCTTCTCCTTCATCTTT 71 |||||||||||||||||||| Sbjct 14740533 TCTTCTTCTCCTTCATCTTT 14740552 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 114 TGGTTTCTTAATTAGCTTTTCTCTCTTTTT 143 |||||||| |||| | ||||||||||| || Sbjct 11506354 TGGTTTCTGAATTTGTTTTTCTCTCTTCTT 11506383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804143177664 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2