BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1401 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr7S 159 5e-37 lcl|Jr4D 147 3e-33 lcl|Jr3S 129 9e-28 lcl|Jr3D 68.0 2e-09 lcl|Jr4S 66.2 9e-09 lcl|Jr2D 64.4 3e-08 lcl|Jr7D 41.0 0.34 lcl|Jr5D 41.0 0.34 lcl|Jr8D 39.2 1.2 lcl|Jr6D 39.2 1.2 lcl|Jr5S 39.2 1.2 lcl|Jr1D 39.2 1.2 lcl|Jr6S 37.4 4.2 lcl|Jr1S 37.4 4.2 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 159 bits (176), Expect = 5e-37 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 853 GGAAAATACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAGAAGGTGAACAGAGAA 912 || |||||||| ||||||||| |||||| | | ||| | | || || || ||| Sbjct 19374186 GGTAAATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAAAGTAAATCGAGCT 19374245 Query 913 GAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAACAGTAATAACTACCAT 972 || |||||||||||||| || | ||||||| || ||||| ||||| || ||||||||| Sbjct 19374246 GAAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 19374305 Query 973 TACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAGTCGTGGTTCGTTAACAGCAAGGTT 1032 || |||||||| || |||||||||| | ||||| || ||||| ||| | ||||| ||| Sbjct 19374306 TATATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 19374365 Query 1033 GATTTGGTTTTGTCTGGTCACGTCCATTCCTATGAG 1068 || | ||||| ||||||| || ||| |||||||| Sbjct 19374366 GACATTGTTTTTGCTGGTCATGTTCATGCCTATGAG 19374401 Score = 93.3 bits (102), Expect = 6e-17 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1195 AGTTTTACTGATCCGCAACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCA 1254 ||||||||||| || ||||| || ||||| || | | ||||| || ||||| || ||| Sbjct 19374853 AGTTTTACTGACCCACAACCAAGTTATTCTGCCTTCCGGGAAGCAAGCTTTGGGCACGCA 19374912 Query 1255 GTTTTGGAGATTTACAATAGAACTCACGCATACTACACATGGCATAGGAACCAAGACAAT 1314 || ||| || | |||||||| || || |||| || ||||| | |||||||| | | Sbjct 19374913 ATTCTGGCTATAAAGAATAGAACCCATGCTCACTATACTTGGCACCGCAACCAAGATAGT 19374972 Query 1315 GAACCTGTTGCCGCTGATTCAATTATGTTGCATAACAGATATTTCTTTCCAGTAGAGGA 1373 | ||||||| |||||||| || | | | ||||| | | |||||||| || || Sbjct 19374973 AATGCTGTTGCTGCTGATTCTCTTTGGATATACAACAGGCACTATTTTCCAGTTGAAGA 19375031 Score = 82.4 bits (90), Expect = 1e-13 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 730 TTCAAGCCCTACATTCACCGTTATCATAACGCCTACAAGGCCTCGAAGAGCATATCTCCT 789 ||||||||||| || || | || || |||||| | ||| |||| | ||| || Sbjct 19373969 TTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAGAGTACATCCCCA 19374028 Query 790 CTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCCTCTTATTCTGCC 849 |||||||| || || | ||||||||||| |||||||| |||||||| ||||| || || Sbjct 19374029 CTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCAGCA 19374088 Query 850 TACGG 854 || || Sbjct 19374089 TATGG 19374093 Score = 66.2 bits (72), Expect = 9e-09 Identities = 84/116 (72%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 374 AGTATGATACCAAATACATCTATGAGGTTGGAACTGATGGATCCGTTAGACAATTTTCCT 433 ||||||| || || ||| | |||||| |||||| || | | | | | ||| || Sbjct 19373233 AGTATGACACTAAGTACTTTTATGAGATTGGAATTGGCGAGTGTGCCCGTCTGTTTCACT 19373292 Query 434 TCACTAGTCCTCCAAAGGTTGGACCTGACGTTCCATACACTTTCGGCATTATTGGT 489 ||| | |||||| || || || || || ||||||||||| || |||||||||||| Sbjct 19373293 TCAGAACTCCTCCCAAAGTGGGGCCAGATGTTCCATACACATTTGGCATTATTGGT 19373348 Score = 51.8 bits (56), Expect = 2e-04 Identities = 49/63 (78%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 313 TCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCACGCCACAATTAAAGGACTC 372 |||||| || ||| ||||||||||||| ||||||| ||||| ||||||||| | Sbjct 19372981 TCTTACAAATACTATACTTATACTTCTGGTTACATTCATCATGCCACCATTAAAGGATTA 19373040 Query 373 GAG 375 ||| Sbjct 19373041 GAG 19373043 Score = 48.2 bits (52), Expect = 0.002 Identities = 87/125 (70%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 580 TCTTACGCAGATGACCATCCAAACCATGATCA-GAGAAAGTGGGATTCGTGGGGAAGATT 638 ||||| || ||||| || ||||||||||| | |||| | ||||| | ||||| | || Sbjct 19373539 TCTTATGCTGATGATCACCCAAACCATGACAATGAGAGA-TGGGACACATGGGGCCGCTT 19373597 Query 639 CGTGGAGCCTTGTGCTGCTTACCAAACCTTCATCTATGCTGCCGGGAATCACGAAATTGA 698 | ||| ||||||| || || | | || | |||| || ||||| ||| |||| Sbjct 19373598 TATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGGCAATCATGAACTTGA 19373657 Query 699 TTTTG 703 || || Sbjct 19373658 TTATG 19373662 Score = 37.4 bits (40), Expect = 4.2 Identities = 30/35 (86%), Gaps = 1/35 (3%) Strand=Plus/Minus Query 885 GCAAGAGTTGAAGAAGGTGAA-CAGAGAAGAGACT 918 ||||||||||||| ||| ||| |||||||| ||| Sbjct 17927126 GCAAGAGTTGAAGGAGGGGAAGGAGAGAAGACACT 17927092 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 147 bits (162), Expect = 3e-33 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 853 GGAAAATACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAGAAGGTGAACAGAGAA 912 || |||||||| ||||||||| |||||| | || ||| | | || || || ||| Sbjct 7757932 GGTAAATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCT 7757991 Query 913 GAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAACAGTAATAACTACCAT 972 || |||||||||||||| || | ||||||| || ||||| ||||| || ||||||||| Sbjct 7757992 GAAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 7758051 Query 973 TACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAGTCGTGGTTCGTTAACAGCAAGGTT 1032 | |||||||| || |||||||||| ||||| || ||||| ||| | ||||| ||| Sbjct 7758052 TTTATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 7758111 Query 1033 GATTTGGTTTTGTCTGGTCACGTCCATTCCTATGAG 1068 || | || || | ||||| || ||| |||||||| Sbjct 7758112 GACATTGTGTTAGCCGGTCATGTTCATGCCTATGAG 7758147 Score = 86.0 bits (94), Expect = 9e-15 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 730 TTCAAGCCCTACATTCACCGTTATCATAACGCCTACAAGGCCTCGAAGAGCATATCTCCT 789 ||||||||||| || || | || || |||||| | ||| | |||| ||| || Sbjct 7757683 TTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAAAGCACATCCCCA 7757742 Query 790 CTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCCTCTTATTCTGCC 849 |||||||| || |||| ||||||||||| |||||||| |||||||| ||||| || || Sbjct 7757743 CTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCAGCA 7757802 Query 850 TACGG 854 || || Sbjct 7757803 TATGG 7757807 Score = 78.8 bits (86), Expect = 1e-12 Identities = 153/222 (69%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 487 GGTGATCTTGGACAAACTTTAGCTTCTAACGAGACATTATATCATTACATGTCAAACC-- 544 ||||||||||| |||||| | ||| || |||| | ||||| | ||||| Sbjct 28096612 GGTGATCTTGGTCAAACTCATGATTCAAATAGGACACTCACCCATTATGAATTAAACCCA 28096671 Query 545 -CTAAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGACCATCCAAAC 603 | |||||||| || | ||| ||||||| | ||||| ||||||||| ||||| Sbjct 28096672 ACAAAAGGCCAGATGGTGTTGTTCGTTGGAGACCTCTCTTATGCAGATGACTATCCATTG 28096731 Query 604 CATGATCAGAGAAAGTGGGATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTTACCAA 663 ||||| | | | ||||||| | |||||||| ||| | ||| ||||||||| | | Sbjct 28096732 CATGACAACAACAGGTGGGATACATGGGGAAGGTTCATAGAGAGAAATGCTGCTTATC-A 28096790 Query 664 ACCTTCATCTATG--CTGCCGGGAATCACGAAATTGATTTTG 703 ||||| |||| |||| || ||||| || || |||| || Sbjct 28096791 ACCTT-GGGTATGGACTGCAGGCAATCATGAGATCGATTATG 28096831 Score = 60.8 bits (66), Expect = 4e-07 Identities = 80/111 (72%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1075 GAACGTGTCTCCAATATTAAATACAACATCACCAATGGCTTGAGCTATCCTGTGAAAGAC 1134 |||||| | || ||||| |||||| | ||||| ||| || ||| | | ||| Sbjct 28098742 GAACGTTTTTCAAATATCGCATACAATGTTGTAAATGGGTTGTGCACTCCCATTAGTGAC 28098801 Query 1135 CCTTCTGCTCCAATCTACATCACTATCGGAGATGGAGGAAACATTGAAGGA 1185 | |||||||| | ||||| || || |||||||||||||| |||||||| Sbjct 28098802 CAATCTGCTCCTGTTTACATAACCATTGGAGATGGAGGAAATCTTGAAGGA 28098852 Score = 50.0 bits (54), Expect = 7e-04 Identities = 83/118 (70%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 374 AGTATGATACCAAATACATCTATGAGGTTGGAACTGATGGATCCGTTAGACAATTTTCC- 432 ||||||| || |||||| | |||||| |||| | || | | | | | | |||| Sbjct 7755938 AGTATGACACTAAATACTTTTATGAGATTGGGATTGGCGTGTGTGCCCGTC--TGTTCCA 7755995 Query 433 -TTCACTAGTCCTCCAAAGGTTGGACCTGACGTTCCATACACTTTCGGCATTATTGGT 489 |||| | |||||| || || || || || ||||||||||| || || ||||| ||| Sbjct 7755996 TTTCAGAACTCCTCCCAAAGTAGGGCCAGATGTTCCATACACATTTGGTATTATGGGT 7756053 Score = 46.4 bits (50), Expect = 0.008 Identities = 48/63 (76%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 313 TCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCACGCCACAATTAAAGGACTC 372 || ||| ||| | | | ||||||||||||| ||||||| ||||| |||||| || | Sbjct 7755773 TCGTACAGATACTTTAATTATACTTCTGGTTACATTCATCATGCCACCATTAAAAGATTA 7755832 Query 373 GAG 375 ||| Sbjct 7755833 GAG 7755835 Score = 41.0 bits (44), Expect = 0.34 Identities = 49/67 (73%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 157 CAGGTTCATATCGTCCAAGGAGATTACAATGGACGTGGTATAATCATATCGTGGGTGACC 216 ||||||||||| |||||||||| ||||| ||| | || || || ||||| || Sbjct 7755623 CAGGTTCATATAACCCAAGGAGATCGTGGAGGACGGGGTGTGATTATTTCATGGGTTACA 7755682 Query 217 CCCTTAA 223 || |||| Sbjct 7755683 CCATTAA 7755689 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1095 ATACAACATCACCAATGGCT 1114 |||||||||||||||||||| Sbjct 8714212 ATACAACATCACCAATGGCT 8714193 Score = 37.4 bits (40), Expect = 4.2 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 358 ACAATTAAAGGACTCGAGTATGATACCAAATACATCTA 395 |||||||||| | || ||||| | |||||||||||| Sbjct 9656422 ACAATTAAAGCAGTCAAGTATCTTTACAAATACATCTA 9656385 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 129 bits (142), Expect = 9e-28 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 853 GGAAAATACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAGAAGGTGAACAGAGAA 912 || ||||| |||||||||||| |||||||| | || | ||| || || || | Sbjct 24737156 GGTAAATATACACCTCAATACACATGGCTCGAAGAGGAACTACCGAAAGTTAATAGGGCC 24737215 Query 913 GAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAACAGTAATAACTACCAT 972 ||||| || ||||| ||||| | || || || ||||| || || ||||||| ||| Sbjct 24737216 GAGACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCAT 24737275 Query 973 TACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAGTCGTGGTTCGTTAACAGCAAGGTT 1032 || ||||| || || | |||||||| |||||||||| | ||||| || || || ||| Sbjct 24737276 TATATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTATAAAGTT 24737335 Query 1033 GATTTGGTTTTGTCTGGTCACGTCCATTCCTATGAGAGATC 1073 ||| |||| || ||||||| || ||| | |||||| |||| Sbjct 24737336 GATGTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24737376 Score = 86.0 bits (94), Expect = 9e-15 Identities = 156/225 (69%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 487 GGTGATCTTGGACAAACTTTAGCTTCTAACGAGACATTATATCATTACATGTCAAACCCT 546 || |||||||| || | ||| | ||| ||| |||| | ||||||| || |||||| Sbjct 24735507 GGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACGCTTACTCATTACGAGTTAAACCCA 24735566 Query 547 ---AAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGACCATCCAAAC 603 ||||| || | || | || ||| ||| | ||||| ||||| || ||||||| Sbjct 24735567 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGACCTCTCTTATGCAGACAACTATCCAAAT 24735626 Query 604 CATGATCAGAGAAAG-TGGGATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTTACCA 662 ||||| || | || |||||| | |||||||| ||||| ||| ||| ||| || || Sbjct 24735627 CATGA-CAATGTTAGATGGGATACATGGGGAAGGTTCGTCGAGAGAAGTGTTGCATATCA 24735685 Query 663 AACCTTCATCTATGCTGCCGGGAATCACGAAATTGATTTTGTCCC 707 | | | || | |||| ||||||||||| | ||||| | ||| Sbjct 24735686 ACCATGGATATGGACTGCAGGGAATCACGAGTTAGATTTCGCCCC 24735730 Score = 64.4 bits (70), Expect = 3e-08 Identities = 89/125 (71%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 730 TTCAAGCCCTACATTCACCGTTATCATAACGCCTACAAGGCCTCGAAGAGCATATCTCCT 789 || ||||| |||| ||||||||||||| | || || || || ||||| | |||| Sbjct 24736378 TTTAAGCCTTACACTCACCGTTATCATGTGCCTTATAAAGCTTCAAAGAGTACTGCTCCC 24736437 Query 790 CTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCCTCTTATTCTGCC 849 ||||||| || || | | || || ||| ||||||| || | || || ||||| || Sbjct 24736438 TTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGTGTTGTCTTCGTATTCGGCG 24736497 Query 850 TACGG 854 ||||| Sbjct 24736498 TACGG 24736502 Score = 41.0 bits (44), Expect = 0.34 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 54 AATCAATAGTGGAACAACAAGCAACTTTGT 83 || ||| | ||||||||||||||||||||| Sbjct 22855405 AAGCAACATTGGAACAACAAGCAACTTTGT 22855376 Score = 41.0 bits (44), Expect = 0.34 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 331 TATACTTCTGGTTTTCTTCATCACGCCACAAT 362 || ||||||||||| |||||||||| ||||| Sbjct 24734973 TACACTTCTGGTTTCATTCATCACGCTACAAT 24735004 Score = 41.0 bits (44), Expect = 0.34 Identities = 57/80 (71%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1219 TATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTTTTGGAGATTTACAATAGAACT 1278 || || || ||| | || || || ||||||||||| ||| || || | || |||| Sbjct 24737972 TACTCAGCTTATCGTGAGGCAAGCTTTGGTCATGCCACTTTTGATATCAAGAACCGAACC 24738031 Query 1279 CACGCATACTACACATGGCA 1298 || || ||||||| ||||| Sbjct 24738032 CATGCTTACTACAGTTGGCA 24738051 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 68.0 bits (74), Expect = 2e-09 Identities = 149/220 (68%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 487 GGTGATCTTGGACAAACTTTAGCTTCTAACGAGACATTATATCATTACATGTCAAACCCT 546 || |||||||| || | ||| | ||| ||| |||| | |||||| || |||||| Sbjct 5533435 GGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACTCTTACTCATTATGAGTTAAACCCG 5533376 Query 547 ---AAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGACCATCCAAAC 603 ||||| || | || | || ||| || | ||||||||||| ||||||| Sbjct 5533375 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGATCTTTCTTACGCAGACCGGTATCCAAAT 5533316 Query 604 CATGATCAGAGAAAG-TGGGATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTTACCA 662 | || || | || |||||| | |||||||| ||||| ||| ||| |||||| || Sbjct 5533315 AACGA-CAATGCTAGATGGGATACATGGGGAAGGTTCGTTGAGAGAAGTGTTGCTTATCA 5533257 Query 663 AACCTTCATCTATGCTGCCGGGAATCACGAAATTGATTTT 702 | | | || | |||| ||||||||||| | |||||| Sbjct 5533256 ACCATGGATATGGACTGCAGGGAATCACGAGTTAGATTTT 5533217 Score = 44.6 bits (48), Expect = 0.028 Identities = 65/92 (71%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1219 TATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTTTTGGAGATTTACAATAGAACT 1278 ||||| || || | || || |||||||||||||| || || || | || |||| Sbjct 5531929 TATTCAGCTTACCGTGAGGCAAGTTTTGGTCATGCCACCTTTGATATCAAGAACCGAACC 5531870 Query 1279 CACGCATACTACACATGGCATAGGAACCAAGA 1310 || || ||||||| ||||| | || ||||| Sbjct 5531869 CATGCTTACTACAGTTGGCACCGTAATCAAGA 5531838 Score = 37.4 bits (40), Expect = 4.2 Identities = 27/29 (93%), Gaps = 2/29 (7%) Strand=Plus/Plus Query 8 TGAACAAAATTTTACTTGTTTTTGTGTTT 36 |||| ||||||||| |||||||||||||| Sbjct 13031241 TGAA-AAAATTTTA-TTGTTTTTGTGTTT 13031267 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 66.2 bits (72), Expect = 9e-09 Identities = 90/124 (73%), Gaps = 9/124 (7%) Strand=Plus/Plus Query 956 ACAGTAATAACTA---CCATTACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAGTCGT 1012 |||||| ||||| ||| || ||||||||||| || ||| |||| | |||||| | Sbjct 1043489 ACAGTAGTAACTCAGCCCACTATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGAT 1043548 Query 1013 GGTTCGT---TAACAGCAAGGTTGATTTGGTTTTGTCTGGTCACGTCCATTCCTATGAGA 1069 |||| || | | || |||||||| || || |||| ||||| ||| ||||||| | Sbjct 1043549 GGTTTGTCTGTTATAG---AGTTGATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAA 1043605 Query 1070 GATC 1073 |||| Sbjct 1043606 GATC 1043609 Score = 42.8 bits (46), Expect = 0.098 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1138 TCTGCTCCAATCTACATCACTATCGGAGATGGAGGAAA 1175 || |||||| | ||||| ||| | |||||||||||||| Sbjct 1044451 TCAGCTCCAGTGTACATAACTGTTGGAGATGGAGGAAA 1044488 Score = 39.2 bits (42), Expect = 1.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1251 TGCAGTTTTGGAGATTTACAATAGAA 1276 |||||||||| | ||||||||||||| Sbjct 200366 TGCAGTTTTGCACATTTACAATAGAA 200391 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 64.4 bits (70), Expect = 3e-08 Identities = 61/78 (78%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 768 GGCCTCGAAGAGCATATCTCCTCTTTGGTACTCTATTAGACGTGCATCTGCTCACATCAT 827 |||||| || || | ||||||||||||||| || || |||||||||||||| || || Sbjct 40281717 GGCCTCCAAAAGTAGCAGTCCTCTTTGGTACTCCATCAGGCGTGCATCTGCTCATATAAT 40281658 Query 828 CGTCCTCTCCTCTTATTC 845 ||| || ||| ||||| Sbjct 40281657 CGTGCTATCCAGCTATTC 40281640 Score = 44.6 bits (48), Expect = 0.028 Identities = 65/92 (71%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1084 TCCAATATTAAATACAACATCACCAATGGCTTGAGCTATCCTGTGAAAGACCCTTCTGCT 1143 || || || || |||||||| || | ||| |||| ||||| |||| ||||| Sbjct 40279625 TCAAACATAAACTACAACATAACTAGTGGGGACCGCTACCCTGTACCAGACAAATCTGCA 40279566 Query 1144 CCAATCTACATCACTATCGGAGATGGAGGAAA 1175 || | ||||| || | |||||||||||||| Sbjct 40279565 CCTGTGTACATAACAGTTGGAGATGGAGGAAA 40279534 Score = 37.4 bits (40), Expect = 4.2 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 358 ACAATTAAAGGACTCGAGTATGATACCAAATACATCTA 395 |||||||||| | || ||||| | |||||||||||| Sbjct 23450411 ACAATTAAAGCAGTCAAGTATCTTTACAAATACATCTA 23450448 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 41.0 bits (44), Expect = 0.34 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 4 AGGATGAACAAAATTTTACTTGTTTTTGTG 33 |||||||||||||||| | |||||||| || Sbjct 18321758 AGGATGAACAAAATTTAATTTGTTTTTATG 18321787 Score = 37.4 bits (40), Expect = 4.2 Identities = 40/51 (78%), Gaps = 4/51 (8%) Strand=Plus/Minus Query 403 GGAACTGATGGATC---CGTT-AGACAATTTTCCTTCACTAGTCCTCCAAA 449 ||||||||| || | |||| ||| || ||||||||||||| |||||| Sbjct 28718746 GGAACTGATAGAACGAACGTTCAGAAAAGTTTCCTTCACTAGGAGTCCAAA 28718696 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 41.0 bits (44), Expect = 0.34 Identities = 135/205 (66%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 865 CCTCAATACGTGTGGCTCGAGCAAGAGTTGAAGAAGGTGAACAGAGAAGA-GACTCCATG 923 ||||| ||| ||||| ||| || ||| | || || || ||||| ||| || || Sbjct 1123623 CCTCAGTACAAATGGCTGGAGTCTGATTTGGCTCAAGTCAATAG-GAAGAAGACCCCCTG 1123565 Query 924 GCTTATTGTCATGGTTCACTCGCCGTGGTACAACAGTAATAACTACCATTACATGGAAGG 983 | || |||| || | || |||| ||||| || | ||||| ||| | ||||| Sbjct 1123564 GGTTCTTGTTCTGTTGCATGCGCCTTGGTATAATACTAATACAGCTCATCAAGGCGAAGG 1123505 Query 984 TGAGAGCATGAGAGCAATGTTTGAGTCGTGGTTCGTTAACAGCAAGGTT-GATTTGGTTT 1042 || | ||||||| || | ||| | ||| ||| ||| || | |||||||||| Sbjct 1123504 AGAAATCATGAGACAAACAATGGAGAAGCTGTTGTATAAG-GCACGGGTCGATTTGGTTT 1123446 Query 1043 TGTCTGGTCACGTCCATTCCTATGA 1067 | |||| || || ||| | ||||| Sbjct 1123445 TTGCTGGACATGTTCATGCATATGA 1123421 Score = 41.0 bits (44), Expect = 0.34 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 10 AACAAAATTTTACTTGTTTTTGTGTTT 36 |||||||||| | |||||||||||||| Sbjct 3136666 AACAAAATTTGAATTGTTTTTGTGTTT 3136692 Score = 41.0 bits (44), Expect = 0.34 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 54 AATCAATAGTGGAACAACAAGCAACTTTGT 83 || ||| | ||||||||||||||||||||| Sbjct 31952750 AAGCAACATTGGAACAACAAGCAACTTTGT 31952721 Score = 39.2 bits (42), Expect = 1.2 Identities = 38/49 (78%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 1143 TCCAATCTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCA 1191 |||| | || |||||||| || ||||||||||| |||||| | ||| Sbjct 1123133 TCCAGTGTATATCACTATTGGGGATGGAGGAAATCGCGAAGGACTTGCA 1123085 Score = 37.4 bits (40), Expect = 4.2 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 979 GAAGGTGAGAGCATGAGAGCAATGTTT 1005 ||||||||||| |||||| |||||||| Sbjct 21027812 GAAGGTGAGAGTATGAGA-CAATGTTT 21027787 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 780 CATATCTCCTCTTTGGTACTCTATTA 805 ||||||| ||| |||||||||||||| Sbjct 29317249 CATATCTTCTCCTTGGTACTCTATTA 29317224 Score = 37.4 bits (40), Expect = 4.2 Identities = 33/40 (83%), Gaps = 1/40 (3%) Strand=Plus/Plus Query 251 ATTGGAAGGCAGTTGATGGTGATGTGAAACCGAAAAAGAA 290 ||||| | | ||||| ||| ||| ||||||||||||| || Sbjct 11782881 ATTGGGAAGTAGTTG-TGGAGATTTGAAACCGAAAAAAAA 11782919 Score = 37.4 bits (40), Expect = 4.2 Identities = 31/36 (86%), Gaps = 3/36 (8%) Strand=Plus/Minus Query 538 TCAAACCCTAAAGGCCAAGCTGTT--CTCTTCCCTG 571 |||||||| ||||||||||||| | ||||||| || Sbjct 17511988 TCAAACCC-AAAGGCCAAGCTGCTCCCTCTTCCGTG 17511954 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 1.2 Identities = 62/89 (70%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1234 GAAGCTAGTTTTGGTCATGCAGTTTTGGAGATTTACAATAGAACTCACGCATACTACACA 1293 ||||| ||||||||||||| | || |||| ||| |||||| || | || | Sbjct 36165385 GAAGCAAGTTTTGGTCATGGTGAGTTAAAGATCGTGAATTCAACTCATGCCTTCTGGAGC 36165326 Query 1294 TGGCATAGGAACCAAGACAATGAACCTGT 1322 |||||| |||| | || | |||||||| Sbjct 36165325 TGGCATCGGAATGATGATGACGAACCTGT 36165297 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 334 ACTTCTGGTTTTCTTCATCACGCCACAATTAAA 366 |||||| |||||||||||| | || ||||||| Sbjct 18192424 ACTTCTTCTTTTCTTCATCAAGACAAAATTAAA 18192392 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/32 (88%), Gaps = 2/32 (6%) Strand=Plus/Plus Query 13 AAAATTTTACTTGTTTTTGTGTTTCTAAGCAT 44 ||||||||||| | ||||||||||||| ||| Sbjct 26886930 AAAATTTTACT--TCTTTGTGTTTCTAAACAT 26886959 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 39.2 bits (42), Expect = 1.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 63 TGGAACAACAAGCAACTTTGT 83 ||||||||||||||||||||| Sbjct 4257889 TGGAACAACAAGCAACTTTGT 4257909 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1255 GTTTTGGAGATTTACAATAGAACTC 1279 ||||||||||| |||||||||||| Sbjct 9771310 GTTTTGGAGATGAACAATAGAACTC 9771334 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 39.2 bits (42), Expect = 1.2 Identities = 30/35 (86%), Gaps = 3/35 (9%) Strand=Plus/Plus Query 49 ACTGTAATCAATAGTGGAACAACAAGCAACTTTGT 83 |||||||| || |||||||||||||||||||| Sbjct 1576660 ACTGTAATGCAT---GGAACAACAAGCAACTTTGT 1576691 Score = 39.2 bits (42), Expect = 1.2 Identities = 28/32 (88%), Gaps = 3/32 (9%) Strand=Plus/Plus Query 822 CATCATCGTCCTCTCCTC---TTATTCTGCCT 850 ||||||| |||||||||| ||||||||||| Sbjct 19729052 CATCATCCTCCTCTCCTCTTTTTATTCTGCCT 19729083 Score = 39.2 bits (42), Expect = 1.2 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1029 GGTTGATTTGGTTTTGTCTGGTCA 1052 ||||||||||||||||| |||||| Sbjct 31513364 GGTTGATTTGGTTTTGTATGGTCA 31513341 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 37.4 bits (40), Expect = 4.2 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 887 AAGAGTTGAAGAAGGTGAACAGAGAAGA 914 ||||||||||| ||||| ||| |||||| Sbjct 23802583 AAGAGTTGAAGCAGGTGGACAAAGAAGA 23802556 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 4.2 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 979 GAAGGTGAGAGCATGAGAGCAATGTTT 1005 ||||||||||| ||||||| ||||||| Sbjct 14340786 GAAGGTGAGAGTATGAGAG-AATGTTT 14340761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732497442420 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2