BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1547 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 235 9e-60 lcl|Jr1S 75.2 2e-11 lcl|Jr7D 48.2 0.003 lcl|Jr6D 48.2 0.003 lcl|Jr1D 46.4 0.009 lcl|Jr8D 42.8 0.11 lcl|Jr2D 42.8 0.11 lcl|Jr8S 41.0 0.38 lcl|Jr6S 41.0 0.38 lcl|Jr5S 41.0 0.38 lcl|Jr3D 41.0 0.38 lcl|JrScfU0007 39.2 1.3 lcl|Jr7S 39.2 1.3 lcl|Jr5D 39.2 1.3 lcl|Jr4S 39.2 1.3 lcl|Jr3S 39.2 1.3 lcl|Jr2S 39.2 1.3 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 235 bits (260), Expect = 9e-60 Identities = 295/406 (73%), Gaps = 9/406 (2%) Strand=Plus/Plus Query 380 GGGGATAATATATTTGGATCAAGTACTACTGATGCAGCTGAATCTCTTCTTGAAGCTATT 439 || || || |||||||| | || ||||| ||||| || ||||| || || |||| || Sbjct 32323252 GGAGACAACATATTTGGGCCGAGCACTACCGATGCTGCCGAATCCCTATTTAAAGCCTTT 32323311 Query 440 GGTCCAGCTATTGAATATGGAATCCCATGGGCTGCTGTTTTAGGAAATCATGACCATGAA 499 ||||| | || |||| ||| | |||||||| || |||||||||| |||||||| ||| Sbjct 32323312 GGTCCCGTCATGGAATCCGGACTTCCATGGGCAGCAATTTTAGGAAACCATGACCAGGAA 32323371 Query 500 TCTACTTTGAACCGTTTAGAATTGATGACTTTCCTTTCTCTTATGGATTTTTCTGTTTCT 559 ||||| |||| ||| ||||||||| ||||| | || || ||||||| ||||||||| Sbjct 32323372 TCTACAATGAATCGTGAGGAATTGATGTCTTTCATCTCCCTCATGGATTATTCTGTTTCA 32323431 Query 560 CAAATCAATCCACTTGTTGAAGATGAAACTA---------AAGGAGATACAATGAGGTTA 610 | | |||||||| | ||||||| ||| |||| | || ||| Sbjct 32323432 CGAGTCAATCCATCAGCTGAAGATCTCTCTAGTCCTGTTAAAGGTGGCACGGTGACAAAC 32323491 Query 611 ATCGATGGATTTGGGAATTACCGAGTGAGAGTTTACGGTGCTCCTGGTTCTGTGTTGGCG 670 || ||||| ||||| ||||| ||||||| || ||||| | ||||| |||| Sbjct 32323492 ATTGATGGGTTTGGAAATTATAATCTGAGAGTATATGGTGCCTCAGGTTCACATCTGGCA 32323551 Query 671 AATAGTACCGTCTTTGATCTCTTCTTTTTTGATAGTGGAGATAGAGAAATAGTACAAGGT 730 || || | | || ||||||| |||||| |||| |||||||| || ||| | | ||||| Sbjct 32323552 AACAGCAGCATCCTTGATCTTTTCTTTCTTGACAGTGGAGACAGGGAAGTTATTCAAGGA 32323611 Query 731 AAACGAACTTATGGATGGATCAAGGAATCACAACTTCGTTGGCTTC 776 ||||||||||||||||| |||||||| |||||| ||||||||| Sbjct 32323612 GTTCGAACTTATGGATGGATTAAGGAATCCCAACTTAGTTGGCTTC 32323657 Score = 196 bits (216), Expect = 8e-48 Identities = 284/397 (72%), Gaps = 3/397 (1%) Strand=Plus/Plus Query 819 ATCCGCCAGCGTTAGCCTTCTTCCACATCCCAATATTGGAAGTTCGGGAACTGTGGTACA 878 |||| ||||| | || || || || |||||||| ||||||||| | |||| |||| Sbjct 32324695 ATCC-CCAGCACTGGCATTTTTTCATATCCCAATTCCAGAAGTTCGGCAGCTGTACTACA 32324753 Query 879 CGCCCTTTATCGGTCAGTTTCAGGAAGGAGTGGCATGCTCTATTGTTCAGTCTGGAGTCT 938 || | || || ||||| || | ||||| ||||| || | || ||||||| Sbjct 32324754 ACAAGATTGTAGGCCAATTTCAAGACGCTGTGGCTTGCTCGTCAGTGAATTCAGGAGTCT 32324813 Query 939 TACAGACATTTGTGTCAATGGGAAATGTAAAAGCTGCGTTCATGGGACACGACCATGTTA 998 ||||||| || | || || ||| |||| | |||| |||||||| || || ||| | Sbjct 32324814 TACAGACCCTTATCTCCATTGGAGATGTGCAGGCTGTTTTCATGGGCCATGATCATAAGA 32324873 Query 999 ATGATTTCTGTGGAACTCTAAAAGGGGTATGGTTTTGTTACGGTGGAGGATTCGGATACC 1058 ||||||| ||||| | |||| | || | ||||||||||| ||||||||||| ||||||| Sbjct 32324874 ATGATTTTTGTGGGAATCTAGATGGTATTTGGTTTTGTTATGGTGGAGGATTTGGATACC 32324933 Query 1059 ATGCTTATGGACGACCAAATTGGCATAGAAGAGCAAGAGTGATAGAAGCTAAGCTTGGGA 1118 ||| |||||| | |||| || |||||||| || ||| ||| |||||||| Sbjct 32324934 ATGGTTATGGGAAGGCTGGGTGGCCAAGGAGAGCAAGGGTCATATTGGCTGAGCTTGGG- 32324992 Query 1119 AAGGAAGAGACA-CATGGGAAGGAATCAAACTTATCAAGACTTGGAAACGTCTTGACGAC 1177 |||| ||| | | | ||| |||| | ||| |||||||| ||||| |||||||| || Sbjct 32324993 AAGGGAGACAAATCCTGGATAGGAGTGAAAAGGATCAAGACATGGAAGCGTCTTGATGAT 32325052 Query 1178 GAATACTTGAGCAAAATAGACGAACAAGTCTTATGGG 1214 || | ||||||| || || || |||||| | |||| Sbjct 32325053 GAGAAGCTGAGCAAGATTGATGAGCAAGTCCTGTGGG 32325089 Score = 93.3 bits (102), Expect = 7e-17 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 231 AGGTCGCGGATATGCATTTCGGAATGGGGATGATTACTCGATGTAGAGATGTGTTGGATT 290 |||| || |||||||||| || | || ||||| |||||||| |||| |||||||| | Sbjct 32322152 AGGTGGCAGATATGCATTATGGCAATGGAATGATAACTCGATGCCGAGACGTGTTGGAGT 32322211 Query 291 CAGAATTCGAATATTGTTCTGATCTCAACACTACTCGGTTTCTTCGTAGGATGATTGAAT 350 | || ||| | ||||| || ||||||||||| ||| | ||||| || ||| | || Sbjct 32322212 CTGAGTTCCAGTATTGCTCCGATCTCAACACGACTAGATTTCTCAAAAGAATGCTCGAGG 32322271 Query 351 CTGAGAGACCTGATTTGATTGCTTTCACTGG 381 || | |||||||| ||||| || || || Sbjct 32322272 TCGAAAAGCCTGATTTCATTGCCTTTACAGG 32322302 Score = 55.4 bits (60), Expect = 2e-05 Identities = 42/50 (84%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 186 ATCTTCCTCTACGATTCCGTGACGATGGCACATTCAAAATCCTCCAGGTC 235 ||||||| || || ||||| |||| || || |||||||||||||||||| Sbjct 32321974 ATCTTCCCCTCCGGTTCCGCTACGACGGTACCTTCAAAATCCTCCAGGTC 32322023 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 296 TTCGAATATTGTTCTGATCTCAACACTACTC 326 || ||||||| | ||||||||||||||| || Sbjct 623194 TTTGAATATTTTGCTGATCTCAACACTAATC 623224 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 5018933 CTCTACTTCATCCAATCC--TATCGCACACAAATT 5018901 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 5070596 CTCTACTTCATCCAATCC--TATCGCACACAAATT 5070564 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 5290021 CTCTACTTCATCCAATCC--TATCGCACACAAATT 5290053 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28664201 CTCTACTTCATCCAATCC--TATCGCACACAAATT 28664169 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28691530 CTCTACTTCATCCAATCC--TATCGCACACAAATT 28691498 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28718828 CTCTACTTCATCCAATCC--TATCGCACACAAATT 28718796 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28745968 CTCTACTTCATCCAATCC--TATCGCACACAAATT 28745936 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 75.2 bits (82), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 959 GGAAATGTAAAAGCTGCGTTCATGGGACACGACCATGTTAATGATTTCTGTGGAACTCTA 1018 ||| |||| || || | |||| || ||||| ||| | |||||||||||||| || Sbjct 8776743 GGAGATGTGAAGGCAGTTTTCACTGGCCACGATCATCTCAATGATTTCTGTGGCCAGCTG 8776684 Query 1019 AAAGGGGTATGGTTTTGTTACGGTGGAGGATTCGGATACCATGCTTAT-GGACGACCAAA 1077 | || || | ||||| | ||| ||||| ||||||||||||||| ||| | | | Sbjct 8776683 ACTGGTATACAACTGTGTTATGCTGGGGGATTTGGATACCATGCTTATGGGAAGGCTGGA 8776624 Query 1078 TTGGCATAGAAGAGCAAGAGTGATAGAAGCTAAGCTTGG-GAA---AGGAAGAGACACAT 1133 | |||| || |||||||| ||| | | ||| || ||||| ||| || || | || | Sbjct 8776623 TGGGCA-AGGAGAGCAAGGGTGGTGGTAGC-AAACTTGGAGAAAACAGAAAAGGGCAGTT 8776566 Query 1134 GGGAAGGAATCAAACTTATCAAGACTTGGAAACGTCTTGACGA 1176 ||| || | | || |||| || ||||| || ||||| || Sbjct 8776565 GGGGAGCAGTAAAGTCAATCAGAACATGGAAGCGCCTTGATGA 8776523 Score = 55.4 bits (60), Expect = 2e-05 Identities = 39/45 (87%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 460 AATCCCATGGGCTGCTGTTTTAGGAAATCATGACCATGAATCTAC 504 ||||||||||||||||||||| || || ||||| || ||||| || Sbjct 8777395 AATCCCATGGGCTGCTGTTTTGGGGAACCATGATCAGGAATCCAC 8777351 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 2650703 CTCTACTTCATCCAATCC--TATCGCACACAAATT 2650671 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 7518517 CTCTACTTCATCCAATCC--TATCGCACACAAATT 7518549 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 12326080 CTCTACTTCATCCAATCC--TATCGCACACAAATT 12326112 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 674 AGTACCGTCTTTGATCTCTTCTTTTTTGAT 703 || ||| ||| ||||||||||||| ||||| Sbjct 5604978 AGAACCCTCTCTGATCTCTTCTTTCTTGAT 5605007 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 573 TTGTTGAAGATGAAACTAAAGGAGA 597 || |||||||||||| ||||||||| Sbjct 8147980 TTCTTGAAGATGAAAATAAAGGAGA 8148004 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 48.2 bits (52), Expect = 0.003 Identities = 35/41 (85%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 1505 GTTCTCTTTGACTATTTGGCAtttttttttttttttttttt 1545 ||||| ||||||||||||| | |||||||| ||||| ||| Sbjct 22493188 GTTCTATTTGACTATTTGGTAAATTTTTTTTATTTTTATTT 22493228 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 8162533 CTCTACTTCATCCAATCC--TATCGCACACAAATT 8162501 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 12691902 CTCTACTTCATCCAATCC--TATCGCACACAAATT 12691870 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 13057716 CTCTACTTCATCCAATCC--TATCGCACACAAATT 13057684 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 13730427 CTCTACTTCATCCAATCC--TATCGCACACAAATT 13730459 Score = 39.2 bits (42), Expect = 1.3 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1118 AAAGGAAGAGACACATGGGAA 1138 ||||||||||||||||||||| Sbjct 15238561 AAAGGAAGAGACACATGGGAA 15238581 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1511 TTTGACTATTTGGCAttttttttttttttttttttt 1546 ||||||||||| | | || |||||||||| ||||| Sbjct 15366073 TTTGACTATTTTTCCTGTTCTTTTTTTTTTCTTTTT 15366108 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 21025070 CTCTACTTCATCCAATCC--TATCGCACACAAATT 21025038 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 681 TCTTTGATCTCTTCTTTTTTGATAGTGGAGATAGAGAA 718 |||||||||||| ||||||| || | |||| ||| || Sbjct 952863 TCTTTGATCTCTCCTTTTTTCATGGGGGAGCAAGACAA 952826 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1511 TTTGACTATTTGGCAtttttttttttttttttt 1543 |||||||||||| || ||||| ||| ||| ||| Sbjct 9313342 TTTGACTATTTGACAATTTTTATTTATTTATTT 9313310 Score = 37.4 bits (40), Expect = 4.6 Identities = 36/45 (80%), Gaps = 1/45 (2%) Strand=Plus/Minus Query 528 CTTTCCTTTCTCTTATGGATTTTTCTGTTTCTCAAATCAATCCAC 572 ||||||||||| || | ||||||| |||||| ||| |||||| Sbjct 15663625 CTTTCCTTTCTTTTCTTTTTTTTTCT-TTTCTCTAATTCATCCAC 15663582 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 48.2 bits (52), Expect = 0.003 Identities = 36/42 (86%), Gaps = 3/42 (7%) Strand=Plus/Plus Query 1506 TTCTCTTTGACTATTTGGCAtttttttttttttttttttttt 1547 |||| ||||||||||| |||||||||| || ||||||||| Sbjct 17563645 TTCTATTTGACTATTT---ATTTTTTTTTATTATTTTTTTTT 17563683 Score = 41.0 bits (44), Expect = 0.38 Identities = 27/29 (93%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 1111 GCTTGGGAAA-GGAAGAGACACATGGGAA 1138 || ||||||| |||||||||||||||||| Sbjct 17448532 GCATGGGAAAAGGAAGAGACACATGGGAA 17448504 Score = 41.0 bits (44), Expect = 0.38 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1509 TCTTTGACTATTTGGCAtttttttttttttttttt 1543 ||||||||||| | |||||||||||||||||| Sbjct 25304768 TCTTTGACTATCAGATTTTTTTTTTTTTTTTTTTT 25304802 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 5904548 CTCTACTTCATCCAATCC--TATCGCACACAAATT 5904580 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 6106508 CTCTACTTCATCCAATCC--TATCGCACACAAATT 6106540 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 10424473 CTCTACTTCATCCAATCC--TATCGCACACAAATT 10424505 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 10470289 CTCTACTTCATCCAATCC--TATCGCACACAAATT 10470257 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/30 (90%), Gaps = 2/30 (7%) Strand=Plus/Minus Query 1111 GCTTGGGAAA--GGAAGAGACACATGGGAA 1138 |||||||||| |||| ||||||||||||| Sbjct 15519834 GCTTGGGAAAAAGGAAAAGACACATGGGAA 15519805 Score = 39.2 bits (42), Expect = 1.3 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Plus Query 1104 AAGCTAAGCTTGGGAAAGG-AAGAGACACATGGGAA 1138 |||| || | ||||||| | |||||||||||||||| Sbjct 15898567 AAGCAAAACATGGGAAAAGTAAGAGACACATGGGAA 15898602 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 25124823 CTCTACTTCATCCAATCC--TATCGCACACAAATT 25124791 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28160171 CTCTACTTCATCCAATCC--TATCGCACACAAATT 28160139 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 139 CAAATTACACATCAACTACAACAAA 163 ||||||||||| |||| |||||||| Sbjct 453721 CAAATTACACACCAACAACAACAAA 453697 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 46.4 bits (50), Expect = 0.009 Identities = 39/46 (85%), Gaps = 4/46 (9%) Strand=Plus/Minus Query 1504 TGTTCTCTTTGACTATTTGGCAttt--ttttttttttttttttttt 1547 ||||||||||| || ||| | ||| ||||||||||||||||||| Sbjct 38515148 TGTTCTCTTTGTCTTTTT--CTTTTCCTTTTTTTTTTTTTTTTTTT 38515105 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 2507280 CTCTACTTCATCCAATCC--TATCGCACACAAATT 2507312 Score = 39.2 bits (42), Expect = 1.3 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Plus Query 1511 TTTGACTATTTGGCAttttttttttttttttttttt 1546 ||||||||||| |||||||| ||||| ||||||| Sbjct 8613500 TTTGACTATTT-TTATTTTTTTATTTTTATTTTTTT 8613534 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 11727102 CTCTACTTCATCCAATCC--TATCGCACACAAATT 11727070 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 15628565 CTCTACTTCATCCAATCC--TATCGCACACAAATT 15628533 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 19156631 CTCTACTTCATCCAATCC--TATCGCACACAAATT 19156599 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 19180989 CTCTACTTCATCCAATCC--TATCGCACACAAATT 19180957 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 19935259 CTCTACTTCATCCAATCC--TATCGCACACAAATT 19935291 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 32139567 CTCTACTTCATCCAATCC--TATCGCACACAAATT 32139535 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 38862959 CTCTACTTCATCCAATCC--TATCGCACACAAATT 38862991 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 44328134 CTCTACTTCATCCAATCC--TATCGCACACAAATT 44328102 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 529 TTTCCTTTCTCTTATGGATTTTTCTGTT 556 ||||||||| ||| | |||||||||||| Sbjct 18186222 TTTCCTTTCACTTTTCGATTTTTCTGTT 18186249 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 42.8 bits (46), Expect = 0.11 Identities = 36/43 (84%), Gaps = 1/43 (2%) Strand=Plus/Minus Query 32 AATAACAAAGAGAGGATGAATTGT-TCAATCGGAAACTGGAAA 73 |||||||||||| |||| || || |||| |||||||||||| Sbjct 11984913 AATAACAAAGAGCTGATGGATGGTATCAACAGGAAACTGGAAA 11984871 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 1053884 CTCTACTTCATCCAATCC--TATCGCACACAAATT 1053916 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 14030542 CTCTACTTCATCCAATCC--TATCGCACACAAATT 14030510 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 22147900 CTCTACTTCATCCAATCC--TATCGCACACAAATT 22147868 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 24332202 CTCTACTTCATCCAATCC--TATCGCACACAAATT 24332170 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 24352529 CTCTACTTCATCCAATCC--TATCACACACAAATT 24352497 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 26047743 CTCTACTTCATCCAATCC--TATCGCACACAAATT 26047711 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 26617386 CTCTACTTCATCCAATCC--TATCGCACACAAATT 26617354 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 27762131 CTCTACTTCATCCAATCC--TATCGCACACAAATT 27762099 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28105101 CTCTACTTCATCCAATCC--TATCGCACACAAATT 28105069 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 32728896 CTCTACTTCATCCAATCC--TATCGCACACAAATT 32728928 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 23187484 TCTACTTCATCAAATCC--TATCGCACACAAATT 23187515 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 26387921 TCTACTTCATCCAATCC--TATCGCACACAAATT 26387890 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/37 (84%), Gaps = 2/37 (5%) Strand=Plus/Minus Query 108 TTCTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 || ||||||||||| ||||| ||| |||||||||| Sbjct 29085983 TTTTCTACTTCATCAAATCC--TATCGCACACAAATT 29085949 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 42.8 bits (46), Expect = 0.11 Identities = 28/31 (90%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1514 GACTATTTGGCAttttttttttttttttttt 1544 |||||||||||||||||| ||| ||| |||| Sbjct 40245750 GACTATTTGGCATTTTTTATTTATTTATTTT 40245780 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 9525559 CTCTACTTCATCCAATCC--TATCGCACACAAATT 9525527 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 12485046 CTCTACTTCATCCAATCC--TATCGCACACAAATT 12485078 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 18216778 CTCTACTTCATCCAATCC--TATCACACACAAATT 18216810 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 18862796 CTCTACTTCATCCAATCC--TATCGCACACAAATT 18862828 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 24105421 CTCTACTTCATCCAATCC--TATCGCACACAAATT 24105453 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 25493626 CTCTACTTCATCCAATCC--TATCGCACACAAATT 25493658 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 32406410 CTCTACTTCATCCAATCC--TATCGCACACAAATT 32406442 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 37178719 CTCTACTTCATCCAATCC--TATCGCACACAAATT 37178751 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 41390111 CTCTACTTCATCCAATCC--TATCGCACACAAATT 41390079 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 576 TTGAAGATGAAACTAAAGGAGATACAATGA 605 || || | |||||||||||||| ||||||| Sbjct 654469 TTTAAAAAGAAACTAAAGGAGAAACAATGA 654498 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1515 ACTATTTGGCAtttttttttttttttttttttt 1547 ||||||||||| | |||||||||||||||| Sbjct 1869646 ACTATTTGGCAAATAGATTTTTTTTTTTTTTTT 1869678 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 18089645 TCTACTTCATCCAATCC--TATCGCACACAAATT 18089614 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 29304664 TCTACTTCATCTAATCC--TATCGCACACAAATT 29304633 Score = 37.4 bits (40), Expect = 4.6 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 132 TCTCACA-CAAATTACACATCAACT 155 ||||||| ||||||||||||||||| Sbjct 38962923 TCTCACAACAAATTACACATCAACT 38962899 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1506 TTCTCTTTGACTATTTGGCAttttt 1530 || ||||||||||||| |||||||| Sbjct 42422393 TTTTCTTTGACTATTTTGCATTTTT 42422417 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 41.0 bits (44), Expect = 0.38 Identities = 30/34 (88%), Gaps = 1/34 (3%) Strand=Plus/Plus Query 1111 GCTTGGGAAA-GGAAGAGACACATGGGAAGGAAT 1143 |||||||||| ||||||||| | |||||||| || Sbjct 10074346 GCTTGGGAAAAGGAAGAGACTCGTGGGAAGGCAT 10074379 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 12397338 CTCTACTTCATCCAATCC--TATCGCACACAAATT 12397370 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 571 ACTTGTTGAAGATGAAACTAAAGGAGAT 598 ||||||||||||||| ||| |||||||| Sbjct 13996740 ACTTGTTGAAGATGATACT-AAGGAGAT 13996714 Score = 37.4 bits (40), Expect = 4.6 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 1324 GTCTCTGGA-ATCTATTGTTGTGAAAAACG 1352 |||||| || ||| |||||||||||||||| Sbjct 6122241 GTCTCTTGATATCAATTGTTGTGAAAAACG 6122212 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 41.0 bits (44), Expect = 0.38 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1504 TGTTCTCTTTGACTATTTGGCAtttttttttt 1535 ||||||||||| | |||| | ||||||||||| Sbjct 14891852 TGTTCTCTTTGTCGATTTTGGATTTTTTTTTT 14891883 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 12682754 CTCTACTTCATCCAATCC--TATCGCACACAAATT 12682786 Score = 39.2 bits (42), Expect = 1.3 Identities = 29/34 (85%), Gaps = 4/34 (12%) Strand=Plus/Minus Query 1506 TTCTCTTTGACTATTTGGCAtttttttttttttt 1539 |||||||||||| ||| |||||||||||||| Sbjct 16417307 TTCTCTTTGACTTTTT----TTTTTTTTTTTTTT 16417278 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 16466888 CTCTACTTCATCCAATCC--TATCGCACACAAATT 16466920 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 10250553 TCTACTTCATCCAATCC--TATCGCACACAAATT 10250584 Score = 37.4 bits (40), Expect = 4.6 Identities = 35/42 (83%), Gaps = 2/42 (5%) Strand=Plus/Minus Query 1504 TGTTCTCTTTG-ACTATTTGGCAttttttttttttttttttt 1544 ||||||||||| ||| | | |||||||||||| ||||||| Sbjct 18010460 TGTTCTCTTTGGACT-TATCATATTTTTTTTTTTCTTTTTTT 18010420 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 41.0 bits (44), Expect = 0.38 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1115 GGGAAAGGAAGAGACACATGGGAAG 1139 || |||||||||||||||||||||| Sbjct 17537627 GGAAAAGGAAGAGACACATGGGAAG 17537603 Score = 41.0 bits (44), Expect = 0.38 Identities = 29/32 (91%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 1116 GGAAAGGAAGAGACACATGGGAAGGAATCAAA 1147 ||||||||||| |||||||||||| ||| ||| Sbjct 22318688 GGAAAGGAAGA-ACACATGGGAAGAAATGAAA 22318658 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 6844997 CTCTACTTCATCCAATCC--TATCGCACACAAATT 6845029 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 12319011 CTCTACTTCATCCAATCC--TATCGCACACAAATT 12319043 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 23693906 CTCTACTTCATCCAATCC--TATCGCACACAAATT 23693874 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 26815214 CTCTACTTCATCCAATCC--TATCGCACACAAATT 26815246 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 31392565 CTCTACTTCATCCAATCC--TATCGCACACAAATT 31392533 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 19179848 TCTACTTCATCCAATCC--TATCACACACAAATT 19179879 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1287 TGGCCACCTTTTGATGTTTTGTGTG 1311 ||||||||||| ||||||| ||||| Sbjct 21582620 TGGCCACCTTTGGATGTTTAGTGTG 21582596 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 22958643 TCTACTTCATCTAATCC--TATCGCACACAAATT 22958674 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 24715308 TCTACTTCATCCAATCC--TATCGCACACAAATT 24715339 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 140 AAATTACACATCAACTACAA 159 |||||||||||||||||||| Sbjct 28518421 AAATTACACATCAACTACAA 28518402 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 41.0 bits (44), Expect = 0.38 Identities = 26/27 (96%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 1455 TTTCGTTTTGGGATGCTTTT-GAAATG 1480 |||||||||||||||||||| |||||| Sbjct 22964877 TTTCGTTTTGGGATGCTTTTGGAAATG 22964851 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 10582929 CTCTACTTCATCCAATCC--TATCGCACACAAATT 10582897 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 12690702 CTCTACTTCATCCAATCC--TATCGCACACAAATT 12690670 Score = 39.2 bits (42), Expect = 1.3 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1118 AAAGGAAGAGACACATGGGAA 1138 ||||||||||||||||||||| Sbjct 20957912 AAAGGAAGAGACACATGGGAA 20957892 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 22476625 CTCTACTTCATCCAATCC--TATCGCACACAAATT 22476657 Score = 39.2 bits (42), Expect = 1.3 Identities = 32/38 (84%), Gaps = 1/38 (3%) Strand=Plus/Plus Query 1226 TCATTTCTGAAGTGAATCTAAGGACAAAACATATAAGG 1263 |||| | |||| ||||| ||| ||||||||||| |||| Sbjct 24939691 TCATGTTTGAAATGAATTTAAAGACAAAACATA-AAGG 24939727 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28493283 CTCTACTTCATCCAATCC--TATCGCACACAAATT 28493315 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 31322497 CTCTACTTCATCCAATCC--TATCGCACACAAATT 31322465 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 31624583 CTCTACTTCATCCAATCC--TATCGCACACAAATT 31624551 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 31789193 CTCTACTTCATCCAATCC--TATCGCACACAAATT 31789225 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 33363994 CTCTACTTCATCCAATCC--TATCGCACACAAATT 33364026 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 35305448 CTCTACTTCATCCAATCC--TATCGCACACAAATT 35305480 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 11456519 TCTACTTCATCCAATCC--TATCGCACACAAATT 11456550 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 1270 TCTCGTTCTTTCATAAATGGCCACCTTTTGATGT 1303 ||| ||||||| ||||||||||| |||||||| Sbjct 12399999 TCTTGTTCTTTGATAAATGGCCA--ATTTGATGT 12399968 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1247 GGACAAAACATATAAGGTATTAATC 1271 ||||||| ||| ||||||||||||| Sbjct 14708922 GGACAAAGCATCTAAGGTATTAATC 14708898 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| |||||| || |||||||||| Sbjct 28837725 TCTACTTCATCCAATCCC--ATTACACACAAATT 28837694 >Query1 on lcl|JrScfU0007| Query1 on lcl|JrScfU0007 Length=67448 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 6990 CTCTACTTCATCCAATCC--TATCGCACACAAATT 7022 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 3382860 CTCTACTTCATCCAATCC--TATCGCACACAAATT 3382828 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 6230193 CTCTACTTCATCCAATCC--TATCACACACAAATT 6230161 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 14414703 CTCTACTTCATCCAATCC--TATCGCACACAAATT 14414671 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 18720755 CTCTACTTCATCCAATCC--TATCGCACACAAATT 18720787 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 21824864 CTCTACTTCATCCAATCC--TATCGCACACAAATT 21824832 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 177 GATCTCCGAATCTTCCTCTACGA 199 |||||||||||||||||| |||| Sbjct 1579316 GATCTCCGAATCTTCCTCCACGA 1579338 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 17699148 CTCTACTTCATCCAATCC--TATCGCACACAAATT 17699116 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 19032310 CTCTACTTCATCCAATCC--TATCGCACACAAATT 19032278 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1338 TTGTTGTGAAAAACGTTTTTCTAATG 1363 |||| |||||||| |||||||||||| Sbjct 23732463 TTGTAGTGAAAAATGTTTTTCTAATG 23732438 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 20333888 TCTACTTCATCCAATCC--TATCGCACACAAATT 20333919 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 1901452 CTCTACTTCATCCAATCC--TATCGCACACAAATT 1901484 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 27094671 CTCTACTTCATCCAATCC--TATCGCACACAAATT 27094703 Score = 37.4 bits (40), Expect = 4.6 Identities = 60/86 (70%), Gaps = 13/86 (15%) Strand=Plus/Minus Query 1451 GTATTTTCGTTTTGGGATGCTTTTGAAATGGTCTCTTCGTTGCTGTTTCGGTGTGTTCTC 1510 |||||||||||| || ||| ||| | ||||| | |||||| ||||||| Sbjct 13305677 GTATTTTCGTTTGGGTATGTTTTC-------TTTCTTCCCT-CTGTTT-----TGTTCTC 13305631 Query 1511 TTTGACTATTTGGCAttttttttttt 1536 |||| |||| | ||||||||||| Sbjct 13305630 TTTGTTGATTTTGGGTTTTTTTTTTT 13305605 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 1402873 CTCTACTTCATCCAATCC--TATCGCACACAAATT 1402841 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 2134694 CTCTACTTCATCCAATCC--TATCGCACACAAATT 2134662 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 2215355 CTCTACTTCATCCAATCC--TATCGCACACAAATT 2215323 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 10445090 CTCTACTTCATCCAATCC--TATCGCACACAAATT 10445122 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 15687083 CTCTACTTCATCCAATCC--TATCGCACACAAATT 15687051 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 7312284 TCTACTTCATCCAATCC--TATCGCACACAAATT 7312315 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 15847516 TCTACTTCATCCAATCC--TATCGCACACAAATT 15847485 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1116 GGAAAGGAAGAGACACATGGGAAGGAATCAAA 1147 ||| ||||||| |||||||||||| ||| ||| Sbjct 20120230 GGAGAGGAAGA-ACACATGGGAAGAAATGAAA 20120260 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 909647 CTCTACTTCATCCAATCC--TATCGCACACAAATT 909679 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 14274551 CTCTACTTCATCCAATCC--TATCGCACACAAATT 14274583 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 17051706 CTCTACTTCATCCAATCC--TATCGCACACAAATT 17051738 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 19249610 CTCTACTTCATCCAATCC--TATCGCACACAAATT 19249642 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 23179766 CTCTACTTCATCCAATCC--TATCGCACACAAATT 23179734 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 26011443 CTCTACTTCATCCAATCC--TATCGCACACAAATT 26011475 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 27017124 CTCTACTTCATCCAATCC--TATCGCACACAAATT 27017092 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 28645054 CTCTACTTCATCAAATCC--TATCGCACACAAATT 28645022 Score = 39.2 bits (42), Expect = 1.3 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Plus Query 1511 TTTGACTATTTG-GCAtttttttttttttttttttt 1545 |||||||||||| | |||| |||||| |||||||| Sbjct 29550220 TTTGACTATTTGTGTATTTAATTTTTTATTTTTTTT 29550255 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 110 CTCTACTTCATCGAATCCCTAATCTCACACAAATT 144 |||||||||||| ||||| ||| |||||||||| Sbjct 30613072 CTCTACTTCATCCAATCC--TATCGCACACAAATT 30613104 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 111 TCTACTTCATCGAATCCCTAATCTCACACAAATT 144 ||||||||||| ||||| ||| |||||||||| Sbjct 18971616 TCTACTTCATCCAATCC--TATCGCACACAAATT 18971585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 810559213656 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2