BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1554 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr1S 210 4e-52 lcl|Jr4D 80.6 4e-13 lcl|Jr6D 44.6 0.031 lcl|Jr3S 42.8 0.11 lcl|Jr5S 41.0 0.38 lcl|Jr5D 41.0 0.38 lcl|Jr3D 41.0 0.38 lcl|Jr4S 39.2 1.3 lcl|Jr2S 39.2 1.3 lcl|Jr2D 39.2 1.3 lcl|Jr1D 39.2 1.3 lcl|Jr8S 37.4 4.6 lcl|Jr8D 37.4 4.6 lcl|Jr7S 37.4 4.6 lcl|Jr7D 37.4 4.6 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 210 bits (232), Expect = 4e-52 Identities = 314/440 (71%), Gaps = 12/440 (3%) Strand=Plus/Minus Query 833 AAGCCTAATCCTCAAGAAGGTATAGCTCCAGGACTAGCTTACTTCCACATTCCATTACCG 892 |||||| | |||| |||| ||||| || || | ||||| ||||| ||||| ||| Sbjct 8776905 AAGCCTGAGGCTCAGAAAGGACCTGCTCCCGGGCTTGTGTACTTTCACATCCCATTGCCG 8776846 Query 893 GAGTTTTTGAGTTTTGACTCAAAGAACGCTACAAAAGGAGTGAGACAAGAAGGTACATCC 952 || ||| ||||| ||||| | ||| || || |||| ||| ||||| |||| Sbjct 8776845 GAATTTGCAAGTTTCGACTCGACAAACATCACT---GGTGTGAAACAGGAAGG--CATCA 8776791 Query 953 GCG--GCTTCTACAAACTCGGGTTTCTTCACAACATTGATAGCTAGAGGAGATGTGAAAT 1010 || |||||| ||||| || || ||||| || || ||||| ||||||||||| Sbjct 8776790 GCTCTGCTTCTGTGAACTCTGGCTTTTTCACGACCATGCTAGCTGCTGGAGATGTGAAGG 8776731 Query 1011 CTGTGTTTGTGGGTCACGACCATGTCAACGACTTCTGCGGTGAACTTAAAGGTTTGAATC 1070 | || || || ||||| ||| |||| || ||||| || | || | ||| | | | Sbjct 8776730 CAGTTTTCACTGGCCACGATCATCTCAATGATTTCTGTGGCCAGCTGACTGGTATACAAC 8776671 Query 1071 TATGTTATGGTGGTGGATTTGGGTATCATGCTTATGGTAAAGCTGGATGGGAAAGAAGAG 1130 | ||||||| ||| |||||||| || ||||||||||| || |||||||||| ||| |||| Sbjct 8776670 TGTGTTATGCTGGGGGATTTGGATACCATGCTTATGGGAAGGCTGGATGGGCAAGGAGAG 8776611 Query 1131 CGAGAGTTGTGGTTGTTGATTTGAATAAGAAGAGAAAAGGAAAG-TGGGGAGCTGTGAAA 1189 | || || ||||| | | ||| | || || |||||||| || |||||||| || || Sbjct 8776610 CAAGGGTGGTGGTAGCAAACTTGGAGAA-AACAGAAAAGGGCAGTTGGGGAGCAGTAAAG 8776552 Query 1190 TCGATTAAGACATGGAAGAGGCTTGATGATAAGCATCTCTCTGTTATTGACTCTCAAGTT 1249 || || | ||||||||| | ||||||||| |||||| || ||||||| || || Sbjct 8776551 TCAATCAGAACATGGAAGCGCCTTGATGATGCGCATCTGACTCCTATTGACGGACATGTC 8776492 Query 1250 CTTTGGAACAA---TTCTGC 1266 ||||||| ||| |||||| Sbjct 8776491 CTTTGGAGCAAGACTTCTGC 8776472 Score = 179 bits (198), Expect = 6e-43 Identities = 278/394 (71%), Gaps = 5/394 (1%) Strand=Plus/Minus Query 416 ACCGGTGATAACATATTTGGGTTTGATGTAAAAGACGCTTTGAAATCCATAAACGCTGCG 475 || || || ||||| ||||||||||| | || || | || || | || ||||| Sbjct 8777478 ACAGGGGACAACATCTTTGGGTTTGACGCAACGGATCCAGCCAAGTCTTTGAATGCTGCC 8777419 Query 476 TTTGCTCCAGCGATTGCGTCTAAAATCCCATGGGTTGCTATTTTGGGAAACCATGACCAA 535 ||||| ||||| || | || ||||||||||||| |||| ||||||| |||||||| || Sbjct 8777418 TTTGCACCAGCAATCTCATCCAAAATCCCATGGGCTGCTGTTTTGGGGAACCATGATCAG 8777359 Query 536 GAATCTACATTTACAAGACAACAAGTTATGAATCACATTGTGAAGCTT-CCCAACACTTT 594 ||||| || | |||| || || ||||| || || || |||| ||||| | Sbjct 8777358 GAATCCACCCTCTCAAGGGAAGGTGTGATGAAACATATAGT-TGGCTTGAAGAACACACT 8777300 Query 595 GTCTCAAGTGAATCCTCCTGAAGCTGCTCATTACATTGATGGTTTTGGTAATTACAATCT 654 ||||||||| |||||| ||| || ||| ||||| |||||||| || || || || Sbjct 8777299 GTCTCAAGTCAATCCTGTGGAA---GCGCATGTTATTGACGGTTTTGGGAACTATAACCT 8777243 Query 655 CCAAATCCATGGAGCTGCTGATTCGAAACTACAGAACAAATCTGTTCTTAATCTTTATTT 714 |||| | ||| | || | || | | ||||||| || ||||| || || ||||| Sbjct 8777242 CCAAGTTGGTGGGGTTGAGGGCTCTAGTTTTGAGAACAAGTCCGTTCTCAACCTGTATTT 8777183 Query 715 TCTCGATAGTGGAGATTATTCTAGTGTTCCTTACATGGAAGGTTATGATTGGATCAAAAC 774 || || ||||||||||| || | || | | || || |||| |||||||||| | Sbjct 8777182 CCTTGACAGTGGAGATTACTCCACGGTCTCATCAATCCTTGGCTATGGTTGGATCAAACC 8777123 Query 775 TTCTCAGCAGTTTTGGTTCGACCGCACTTCAAAA 808 |||||||| ||||||| || |||||||| ||| Sbjct 8777122 CTCTCAGCAACTTTGGTTTGAACGCACTTCCAAA 8777089 Score = 75.2 bits (82), Expect = 2e-11 Identities = 121/174 (70%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 251 GGCGAGTTCAAGATACTACAAGTGGCGGATATGCATTTTGCTAACGGCGCTAAGACGCAG 310 || ||||| |||||||| || ||||| |||||||||| || ||||| | || | Sbjct 8778205 GGGGAGTTTAAGATACTGCAGGTGGCCGATATGCATTATGGGGACGGCAAGACCACACCT 8778146 Query 311 TGTCAAAATGTTCTTCCTAGCCAGAGAGCTCATTGCTCAGACCTCAACACCACCATCTTC 370 || | | || ||||| ||| || | |||||| ||||| || ||||| ||| Sbjct 8778145 TGCGAGGACGTGCTTCCCAGCGAGTTCCCCACTTGCTCTGACCTTAATACCACAGCCTTT 8778086 Query 371 ATGTCGCGAGTCATCGCCGCCGAGAAGCCTGATCTTATCGTCTTCACCGGTGAT 424 || ||| | ||| |||||||||||| || | ||||| ||||||||| || Sbjct 8778085 ATCCAGCGGATGATCCTCGCCGAGAAGCCCAATTTCATCGTTTTCACCGGTAAT 8778032 Score = 41.0 bits (44), Expect = 0.38 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 633 ATGGTTTTGGTAATTACAATCTCCAAATCCAT 664 |||||||||| || |||| |||||||||||| Sbjct 7940909 ATGGTTTTGGAAAAAACAAGCTCCAAATCCAT 7940878 Score = 37.4 bits (40), Expect = 4.6 Identities = 29/32 (91%), Gaps = 2/32 (6%) Strand=Plus/Plus Query 1385 AGTTAGTTTTAAACTCCATTTGATGTAATTTT 1416 |||| |||||||| ||||||||||| |||||| Sbjct 27677564 AGTT-GTTTTAAAATCCATTTGATG-AATTTT 27677593 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 80.6 bits (88), Expect = 4e-13 Identities = 153/225 (68%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 998 GGAGATGTGAAATCTGTGTTTGTGGGTCACGACCATGTCAACGACTTCTGCGGTGAACTT 1057 ||||||||| | |||| || |||| || || ||| || || || || || | || Sbjct 32324834 GGAGATGTGCAGGCTGTTTTCATGGGCCATGATCATAAGAATGATTTTTGTGGGAATCTA 32324893 Query 1058 AAAGGTTTGAATCTATGTTATGGTGGTGGATTTGGGTATCATGCTTATGGTAAAGCTGGA 1117 | ||| | | ||||||||||| |||||||| || |||| |||||| || ||||| Sbjct 32324894 GATGGTATTTGGTTTTGTTATGGTGGAGGATTTGGATACCATGGTTATGGGAAGGCTGGG 32324953 Query 1118 TGGGAAAGAAGAGCGAGAGTTGTGGTTGTTGATTTGAATAAGAAGAGAAAAGGAAAGTGG 1177 ||| ||| ||||| || || | | | ||| | | |||| || | | ||| Sbjct 32324954 TGGCCAAGGAGAGCAAGGGTCATATTGGCTGA---GCTTGGGAAGGGAGACAAATCCTGG 32325010 Query 1178 GGAGCTGTGAAATCGATTAAGACATGGAAGAGGCTTGATGATAAG 1222 || |||||| ||| |||||||||||| | ||||||||| || Sbjct 32325011 ATAGGAGTGAAAAGGATCAAGACATGGAAGCGTCTTGATGATGAG 32325055 Score = 53.6 bits (58), Expect = 6e-05 Identities = 37/42 (88%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 503 CCATGGGTTGCTATTTTGGGAAACCATGACCAAGAATCTACA 544 ||||||| || ||||| |||||||||||||| ||||||||| Sbjct 32323336 CCATGGGCAGCAATTTTAGGAAACCATGACCAGGAATCTACA 32323377 Score = 41.0 bits (44), Expect = 0.38 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 1150 TTTGAATAAGAAGAGAAAAGGAAAGTGGGGAG 1181 |||||| ||||||| | || |||||||||||| Sbjct 5759451 TTTGAAGAAGAAGACATAAAGAAAGTGGGGAG 5759420 Score = 41.0 bits (44), Expect = 0.38 Identities = 34/39 (87%), Gaps = 2/39 (5%) Strand=Plus/Plus Query 1135 AGTTGTGG-TTGTTGATTTGAATAAGAAGAGAAAAGGAA 1172 || ||||| |||||||||| | |||||||||||| |||| Sbjct 11015982 AGATGTGGATTGTTGATTTTA-TAAGAAGAGAAAGGGAA 11016019 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 611 CCTGAAGCTGCTCATTACATTGATGGTTTTGGT 643 ||||| | | |||||||||||| || ||||||| Sbjct 23078525 CCTGAGGGTTCTCATTACATTGTTGCTTTTGGT 23078557 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 44.6 bits (48), Expect = 0.031 Identities = 32/36 (89%), Gaps = 1/36 (3%) Strand=Plus/Plus Query 1484 AGTATTATATTTTAACCGTTCTTTAAACTTTTGATT 1519 ||||||||||||||| | || |||||||||| |||| Sbjct 5147652 AGTATTATATTTTAAAC-TTATTTAAACTTTGGATT 5147686 Score = 42.8 bits (46), Expect = 0.11 Identities = 29/33 (88%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1154 AATAAGAAGAGAAAAGGAAAGTGGGGAGCTGTG 1186 || ||||| |||||| |||||||||||| |||| Sbjct 7685706 AAAAAGAAAAGAAAAAGAAAGTGGGGAGATGTG 7685674 Score = 39.2 bits (42), Expect = 1.3 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1195 TAAGACATGGAAGAGGCTTGATGA 1218 |||||||||| ||||||||||||| Sbjct 25331924 TAAGACATGGGAGAGGCTTGATGA 25331901 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1424 TTAAGACTTTAAGGCAAGAAAGTGAAAA 1451 ||||||||| || |||||||||||||| Sbjct 25491055 TTAAGACTTCGAGCCAAGAAAGTGAAAA 25491028 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 42.8 bits (46), Expect = 0.11 Identities = 34/41 (83%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 1135 AGTTGTGGTTGTTGATTTGAATAAGAAGAGAAAAGGAAAGT 1175 |||| |||||||||||||| | | |||||||||| | ||| Sbjct 15872748 AGTTAAGGTTGTTGATTTGATTGACAAGAGAAAAGTAGAGT 15872788 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/37 (84%), Gaps = 2/37 (5%) Strand=Plus/Minus Query 1391 TTTTAAACTCCA--TTTGATGTAATTTTGTTTGGTTT 1425 |||||||| ||| ||| || ||||||||||| |||| Sbjct 7273274 TTTTAAACACCAGATTTAATTTAATTTTGTTTTGTTT 7273238 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 41.0 bits (44), Expect = 0.38 Identities = 28/31 (90%), Gaps = 2/31 (6%) Strand=Plus/Plus Query 1153 GAATAAGAAGAG--AAAAGGAAAGTGGGGAG 1181 |||||||||||| ||| ||||||||||||| Sbjct 18683515 GAATAAGAAGAGGGAAATGGAAAGTGGGGAG 18683545 Score = 39.2 bits (42), Expect = 1.3 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 1446 TGAAAAACTAAACTTTCAAACACATTAGAGATGTGA 1481 ||||||| | || | |||||||||||| ||||| || Sbjct 3486234 TGAAAAATTGAAATATCAAACACATTACAGATGGGA 3486199 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 634 TGGTTTTGGTAATTACAATCTCCAAATCCAT 664 ||||||||| || |||| |||||||||||| Sbjct 12301556 TGGTTTTGGAAAAAACAAGCTCCAAATCCAT 12301526 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 634 TGGTTTTGGTAATTACAATCTCCAAATCCAT 664 ||||||||| || |||| |||||||||||| Sbjct 12701060 TGGTTTTGGAAAAAACAAGCTCCAAATCCAT 12701030 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 1487 ATTATATTTTAACCGTTCTTTAAACTTT 1514 |||||||||||||| |||||| |||||| Sbjct 29123866 ATTATATTTTAACC-TTCTTTTAACTTT 29123892 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 714024 TAACATGTTTGGGTTTGATGTAA 714002 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 16040531 TAACATGTTTGGGTTTGATGTAA 16040553 Score = 37.4 bits (40), Expect = 4.6 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Plus Query 1386 GTTAGTTTTAAACTCCATTTGATGTAAT-TTTGTTTGGTTTA 1426 ||||||||||| | | |||| ||||||| || | || ||||| Sbjct 25262010 GTTAGTTTTAATCACTATTTTATGTAATATTCGGTTTGTTTA 25262051 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 41.0 bits (44), Expect = 0.38 Identities = 36/44 (82%), Gaps = 2/44 (5%) Strand=Plus/Minus Query 1223 CATCT--CTCTGTTATTGACTCTCAAGTTCTTTGGAACAATTCT 1264 ||||| || | |||||| ||||||||||||||| | |||||| Sbjct 12194054 CATCTTGCTATTTTATTGCCTCTCAAGTTCTTTGATAAAATTCT 12194011 Score = 39.2 bits (42), Expect = 1.3 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 427 CATATTTGGGTTTGATGTAAAAGA 450 |||||||||||| ||||||||||| Sbjct 10504873 CATATTTGGGTTAGATGTAAAAGA 10504850 Score = 37.4 bits (40), Expect = 4.6 Identities = 35/43 (81%), Gaps = 4/43 (9%) Strand=Plus/Plus Query 1487 ATTATATTTTAACCGTTCTTTAAACTTTTGATTAATCGTTTTA 1529 |||||||||||||| ||||| |||||| ||||| ||||| Sbjct 445628 ATTATATTTTAACC-CTCTTTTAACTTT---ATAATCTTTTTA 445666 Score = 37.4 bits (40), Expect = 4.6 Identities = 34/41 (83%), Gaps = 4/41 (10%) Strand=Plus/Plus Query 1157 AAGAAGAGAAAAGGAAAGTGGGGAGC-TGTGAAATCGATTA 1196 || |||||||||||||||| |||| || ||||| ||||| Sbjct 29922448 AAAAAGAGAAAAGGAAAGT---GAGCGTGGGAAATTGATTA 29922485 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 41.0 bits (44), Expect = 0.38 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Minus Query 1463 AAACACATTAGAGATGTGAGTAGTATTATATTTTAAC 1499 ||| ||||||||||||||| || | |||||||| || Sbjct 35753390 AAATACATTAGAGATGTGATTAATGGTATATTTTCAC 35753354 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 19184823 TAACATGTTTGGGTTTGATGTAA 19184801 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 534 AAGAATCTACATTTACAAGA 553 |||||||||||||||||||| Sbjct 33506022 AAGAATCTACATTTACAAGA 33506041 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 39.2 bits (42), Expect = 1.3 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 424 TAACATATTTGGGTTTGATGTAAA 447 ||||||||||||||||||| |||| Sbjct 14599209 TAACATATTTGGGTTTGATATAAA 14599232 Score = 39.2 bits (42), Expect = 1.3 Identities = 29/33 (88%), Gaps = 2/33 (6%) Strand=Plus/Minus Query 1414 TTTGTTTGGTTTAAGACTTTAAGGCAAGAAAGT 1446 |||||||| || ||| |||||||||||||||| Sbjct 29887324 TTTGTTTGTTTAAAG--TTTAAGGCAAGAAAGT 29887294 Score = 37.4 bits (40), Expect = 4.6 Identities = 39/48 (81%), Gaps = 5/48 (10%) Strand=Plus/Minus Query 692 AAATCTGTTCTT-AATCTTTAT---TTTC-TCGATAGTGGAGATTATT 734 |||||||||| | ||| || || |||| |||||||||||||| ||| Sbjct 24495580 AAATCTGTTCATGAATTTTGATATGTTTCATCGATAGTGGAGATCATT 24495533 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.3 Identities = 36/45 (80%), Gaps = 2/45 (4%) Strand=Plus/Plus Query 633 ATGGTTTTGGTAATTACAATCTCCAAATCCAT--GGAGCTGCTGA 675 |||||||||||| |||| ||||||| |||| ||| ||| ||| Sbjct 23288744 ATGGTTTTGGTAGAAACAAGCTCCAAAACCATCGGGACCTGGTGA 23288788 Score = 37.4 bits (40), Expect = 4.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 128 AATCGAAGAAGAAGAAGCCT 147 |||||||||||||||||||| Sbjct 4263071 AATCGAAGAAGAAGAAGCCT 4263090 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 14788549 TAACATGTTTGGGTTTGATGTAA 14788571 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 28762861 TAACATGTTTGGGTTTGATGTAA 28762839 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1320 TCTACTAAATGTTCTGTTTTAGTTG 1344 ||||||||||| ||||||||| ||| Sbjct 33016343 TCTACTAAATGCTCTGTTTTATTTG 33016367 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1058 AAAGGTTTGAATCTATGTTATGGTGG 1083 |||||||||||||||| |||||||| Sbjct 7808483 AAAGGTTTGAATCTATTATATGGTGG 7808508 Score = 37.4 bits (40), Expect = 4.6 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1346 TTTTGGGTTTCATAGAAACTGTTTAAGTGTTT 1377 ||||||||| ||||||||||||| | ||||| Sbjct 11552694 TTTTGGGTTG-ATAGAAACTGTTTTATTGTTT 11552724 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 28093412 TAACATGTTTGGGTTTGATGTAA 28093434 Score = 37.4 bits (40), Expect = 4.6 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 1510 ACTTTTGATTAATCGTT-TTACCATTTTGTGTTACCA 1545 |||||| |||||| | | |||||||||||| | |||| Sbjct 28558174 ACTTTTTATTAATAGATCTTACCATTTTGTTTAACCA 28558138 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1477 TGTGAGTAGTATTATATTTTAACCGTTCTTT 1507 ||||| |||||| ||||||||||| || ||| Sbjct 16429983 TGTGACTAGTATAATATTTTAACCTTTGTTT 16429953 Score = 37.4 bits (40), Expect = 4.6 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 1442 AAAGTGAAAAACTAAACTTTCAAACACATTAGAGATGTGA 1481 |||| |||||| ||| || | ||| || ||||||||||| Sbjct 23636125 AAAGAGAAAAATTAACCTGTGAAAGACTATAGAGATGTGA 23636086 Score = 37.4 bits (40), Expect = 4.6 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 1442 AAAGTGAAAAACTAAACTTTCAAACACATTAGAGATGTGA 1481 |||| |||||| ||| || | ||| || ||||||||||| Sbjct 23976015 AAAGAGAAAAATTAACCTGTGAAAGACTATAGAGATGTGA 23975976 Score = 37.4 bits (40), Expect = 4.6 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 1442 AAAGTGAAAAACTAAACTTTCAAACACATTAGAGATGTGA 1481 |||| |||||| ||| || | ||| || ||||||||||| Sbjct 24177840 AAAGAGAAAAATTAACCTGTGAAAGACTATAGAGATGTGA 24177879 Score = 37.4 bits (40), Expect = 4.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 986 TTGATAGCTAGAGGAGATGTGAAATCTGTG 1015 ||||||||||| | ||| ||||||||||| Sbjct 42866437 TTGATAGCTAGTAGTGATTTGAAATCTGTG 42866408 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1149 ATTTGAATAAGAAGAGAAAAGGA 1171 ||||||||||||| ||||||||| Sbjct 5359992 ATTTGAATAAGAAAAGAAAAGGA 5360014 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 3251414 TAACATGTTTGGGTTTGATGTAA 3251392 Score = 37.4 bits (40), Expect = 4.6 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 1481 AGTAGTATTATATTTTAACCGTTCTTTAAACTTTTGATTA 1520 ||||||||||||||||| | ||||| ||| || |||| Sbjct 4114523 AGTAGTATTATATTTTATTACTGCTTTAGACTATTAATTA 4114562 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1149 ATTTGAATAAGAAGAGAAAAGGAAAGTG 1176 ||||||| |||||||||||| |||| || Sbjct 13807195 ATTTGAAAAAGAAGAGAAAAAGAAAATG 13807222 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 444 TAAAAGACGCTTTGAAATCCATAAA 468 ||||||||||| |||||| |||||| Sbjct 21100105 TAAAAGACGCTGTGAAATACATAAA 21100129 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 424 TAACATATTTGGGTTTGATGTAA 446 |||||| |||||||||||||||| Sbjct 14717559 TAACATGTTTGGGTTTGATGTAA 14717537 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1148 GATTTGAATAAGAAGAGAAAAGGAA 1172 |||||| | |||||||||||||||| Sbjct 819777 GATTTGGAAAAGAAGAGAAAAGGAA 819801 Score = 37.4 bits (40), Expect = 4.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1119 GGGAAAGA-AGAGCGAGAGTTGTGGTT 1144 |||||||| |||| ||||||||||||| Sbjct 4353593 GGGAAAGAGAGAGGGAGAGTTGTGGTT 4353619 Score = 37.4 bits (40), Expect = 4.6 Identities = 30/35 (86%), Gaps = 1/35 (3%) Strand=Plus/Plus Query 656 CAAATCCATGGAGCTGCTGATTCGAAACTACAGAA 690 || || |||| ||||||||||| ||||||| |||| Sbjct 24169705 CATATGCATGAAGCTGCTGATT-GAAACTAGAGAA 24169738 Score = 37.4 bits (40), Expect = 4.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1292 TGATTCCATGTGTTGTTGTTTTG 1314 |||||| |||||||||||||||| Sbjct 27866152 TGATTCGATGTGTTGTTGTTTTG 27866174 Score = 37.4 bits (40), Expect = 4.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1339 TAGTTGGTTTTGGGTTTCATAGAAA 1363 |||||||||||| |||||| ||||| Sbjct 28214424 TAGTTGGTTTTGTGTTTCAAAGAAA 28214448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 814301901318 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2