BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1844 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr3D 223 7e-56 lcl|Jr3S 187 5e-45 lcl|Jr7S 136 8e-30 lcl|Jr4D 122 2e-25 lcl|Jr4S 62.6 1e-07 lcl|Jr5D 48.2 0.003 lcl|Jr2D 48.2 0.003 lcl|Jr8S 46.4 0.011 lcl|Jr8D 42.8 0.13 lcl|Jr1D 42.8 0.13 lcl|Jr7D 41.0 0.45 lcl|Jr6D 41.0 0.45 lcl|Jr6S 39.2 1.6 lcl|JrScfU0001 37.4 5.5 lcl|Jr5S 37.4 5.5 lcl|Jr2S 37.4 5.5 lcl|Jr1S 37.4 5.5 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 223 bits (246), Expect = 7e-56 Identities = 182/221 (82%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 1172 GGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACG 1231 || |||||||| || || ||||||||||| ||| |||| || ||||| |||||||| || Sbjct 5532710 GGTAAATACACCCCTCAATACCAATGGCTTGAACAGGAATTGCCAAAAGTTAACAGGACT 5532651 Query 1232 GAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTACCAT 1291 || || || |||||||||||||| |||||||| || ||||| || ||||| | || ||| Sbjct 5532650 GAGACACCTTGGTTGATTGTTCTTATGCATTCCCCCTGGTATAATAGCTACAACTATCAT 5532591 Query 1292 TACATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTA 1351 || ||||| || ||||| ||||| ||||||||||||| |||||||| ||||||||||| Sbjct 5532590 TATATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTTGTGAAGTACAAAGTT 5532531 Query 1352 GATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATC 1392 ||||| || |||||||||||||| || || || ||| |||| Sbjct 5532530 GATGTGGTATTTGCAGGTCATGTTCATGCTTATGAACGATC 5532490 Score = 131 bits (144), Expect = 3e-28 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 803 GGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGAATAACCCA 862 ||||||||||| ||||||| ||| ||||||| || | || ||||||||| ||||| Sbjct 5533435 GGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACTCTTACTCATTATGAGTTAAACCCG 5533376 Query 863 ACAAAAGGGCAAGCGGTTTTGTTCGTCGGCGATATCTCATACGCTGATACTTATCCGGAT 922 |||||| || |||| ||||| || || ||| | || ||||| || ||||| || Sbjct 5533375 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGATCTTTCTTACGCAGACCGGTATCCAAAT 5533316 Query 923 CATGACAATAGGAGATGGGACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAG 982 | |||||| |||||||| | |||||||| || | ||| ||||| |||||||| Sbjct 5533315 AACGACAATGCTAGATGGGATACATGGGGAAGGTTCGTTGAGAGAAGTGTTGCTTATCAA 5533256 Query 983 CCTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGAT 1032 || ||||| |||||| | || || || || | |||||| ||||| || Sbjct 5533255 CCATGGATATGGACTGCAGGGAATCACGAGTTAGATTTTAAACCGGAAAT 5533206 Score = 127 bits (140), Expect = 4e-27 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1393 GGAACGTGTATCAAACATAGCTTACAATGTTGTTAACGGCATTTGCACTCCAGTCAAAGA 1452 ||| |||||||| ||| | || ||||||||||| || || ||||||||||| || || || Sbjct 5532172 GGAGCGTGTATCCAACGTTGCATACAATGTTGTAAATGGTATTTGCACTCCTGTAAAGGA 5532113 Query 1453 TCAATCAGCTCCAGTCTATATCACCATTGGTGATGGAGGCAATATTGAGGGCTTGGCTAC 1512 |||||||||||| || || || |||||||| |||||||| ||| |||| ||||| || || Sbjct 5532112 TCAATCAGCTCCTGTATACATAACCATTGGCGATGGAGGGAATCTTGAAGGCTTAGCAAC 5532053 Query 1513 CAA 1515 ||| Sbjct 5532052 CAA 5532050 Score = 96.9 bits (106), Expect = 7e-18 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 489 AGGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGGTGACAC 548 |||| || |||||||||||||| | || ||||||||| |||| ||||||||||| Sbjct 5534156 AGGTCCACATAACACAAGGAGACCATGTGGGGAAGGCAGTGCTAGTGTCATGGGTGACTG 5534097 Query 549 AAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCACCAAAAAGCACA 608 | | | || || || | || ||||| |||| || ||| ||| || | || Sbjct 5534096 TGAATGAACCGGGTTCGAATACCGTGATTTATTGGAGTGAAAATGGCAAGGAATA---CA 5534040 Query 609 AAGCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCATC 668 | ||| | |||||| | ||| || |||||||||||||| || |||||||| || |||| Sbjct 5534039 AGGCTGAAGGCAAAGTTACTACCTATAAGTTCTACAATTACACCTCTGGTTTCATTCATC 5533980 Query 669 ATTGCCCTATCAGAAACTT 687 | | ||||||||||| Sbjct 5533979 ACACGACCATCAGAAACTT 5533961 Score = 84.2 bits (92), Expect = 4e-14 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1517 ATGACTGAGCCTCAGCCTAAGTACTCTGCCTTTAGAGAAGCAAGCTTCGGGCATGCTATA 1576 ||||| || || |||||| || || || | | || ||||| || || ||||| | Sbjct 5531950 ATGACAGAACCACAGCCTGCATATTCAGCTTACCGTGAGGCAAGTTTTGGTCATGCCACC 5531891 Query 1577 TTCTCGATAAAGAACAGGACGCATGCTCACTATGGATGGCATAGGAACCATGATGGTTAT 1636 || || |||||| | || |||||| |||| | ||||| | || || ||||| ||| Sbjct 5531890 TTTGATATCAAGAACCGAACCCATGCTTACTACAGTTGGCACCGTAATCAAGATGGATAT 5531831 Query 1637 GCTGTGGAGGGTGACAGAATGTGGTTTTATAACAGATTTTGGCATCCTGTTGATGATTC 1695 || ||||| | || |||||||||| ||||||| ||| || | ||||||||||| Sbjct 5531830 GCGGTGGAAGCAGATTCTATGTGGTTTTTCAACAGATACTGGAATTCAGTTGATGATTC 5531772 Score = 77.0 bits (84), Expect = 6e-12 Identities = 87/115 (76%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 380 TGTAATGGAGGCATCACCAGTAGATATGTCAGAAAATT--AGAAGCAACCGTTGATATGC 437 ||||||||||| | || || | | ||| |||||| | ||||| | | ||||||| Sbjct 5534487 TGTAATGGAGGGAAGACGAGCACTTTTGTGAGAAAAGTTGAGAAGACTCAG--GATATGC 5534430 Query 438 CTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGGT 492 |||| ||||||||||| ||||| | ||| ||||| ||||| ||||||||||| Sbjct 5534429 CTCTGGATAGCGATGTCTTTCGAATCCCTCCCGGCTATAATGCGCCTCAACAGGT 5534375 Score = 69.8 bits (76), Expect = 9e-10 Identities = 101/143 (71%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1034 GGTGAAAACAGACCGTTTAAGCCGTTCACGCATAGGTACCGAACTCCTTACCGATCATCA 1093 || |||| | ||| |||||||| | ||| || | |||| |||||| | | ||| Sbjct 5533006 GGGGAAACCGAACCTTTTAAGCCTTACACTAATCGTTACCATGTGCCTTACAAAGCTTCA 5532947 Query 1094 GGCAGCACCGAACCATTCTGGTACTCGATAAAGAGAGGACCGGCTTACATAATCGTGCTA 1153 ||| || | || || ||||| || || ||||||| | |||||||| || || | Sbjct 5532946 AACAGTACTGCTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGTCTTG 5532887 Query 1154 GCTTCATATTCAGCATATGGAAA 1176 |||||||| ||||||||||| || Sbjct 5532886 GCTTCATACTCAGCATATGGTAA 5532864 Score = 62.6 bits (68), Expect = 1e-07 Identities = 79/109 (72%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 696 ACACCAAGTACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCA 755 ||||||| ||||| || ||| | || | || || || || |||| ||||| | | Sbjct 5533760 ACACCAAATACTACTACGTGGTTGGGATTGGGCACACTCCACGGCAGTTCTGGTTTATTA 5533701 Query 756 CTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGG 804 |||| ||||| | || |||||||| || || || ||||||||||| || Sbjct 5533700 CTCCCCCTGAAGTTGGCCCTGATGTGCCTTATACATTTGGTCTCATAGG 5533652 Score = 41.0 bits (44), Expect = 0.45 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 1585 AAAGAACAGGACGCATGCTCACTATGG 1611 |||||||| || ||||||||||||||| Sbjct 1666243 AAAGAACAAGATGCATGCTCACTATGG 1666217 Score = 37.4 bits (40), Expect = 5.5 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 1654 AATGTGGTTTTATAACAGATTTTGGCATCCTGTT-GATG 1691 ||||||||||| ||||||| ||| ||| | |||| |||| Sbjct 2353522 AATGTGGTTTTCTAACAGAATTT-GCAGCATGTTCGATG 2353485 Score = 37.4 bits (40), Expect = 5.5 Identities = 37/47 (79%), Gaps = 2/47 (4%) Strand=Plus/Plus Query 101 AAGAAATAGAATTTAATACCTTTCCTTTTAAAATTCCCAAATAAAAA 147 || ||||| ||| |||| | | ||||| |||| |||||||||||| Sbjct 6240152 AAAAAATAAAATATAATTCAAT--CTTTTCAAATACCCAAATAAAAA 6240196 Score = 37.4 bits (40), Expect = 5.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1744 CTCTATGATTGAACAACCATCCAAATAAAT 1773 ||| || ||| |||||||||||||| |||| Sbjct 29430277 CTCCATTATTTAACAACCATCCAAAAAAAT 29430248 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 187 bits (206), Expect = 5e-45 Identities = 174/221 (79%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1172 GGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACG 1231 || ||||| ||||| || ||| ||||||||||||||| | || || ||||| || | Sbjct 24737156 GGTAAATATACACCTCAATACACATGGCTCGAAGAGGAACTACCGAAAGTTAATAGGGCC 24737215 Query 1232 GAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTACCAT 1291 || || || ||| |||||||||| | |||||| || ||||| || |||||| | || ||| Sbjct 24737216 GAGACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCAT 24737275 Query 1292 TACATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTA 1351 || ||||| || ||||| ||||| ||||||| |||||| |||||||| ||||| ||||| Sbjct 24737276 TATATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTATAAAGTT 24737335 Query 1352 GATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATC 1392 ||||| || ||||| |||||||| || || || || |||| Sbjct 24737336 GATGTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24737376 Score = 140 bits (154), Expect = 6e-31 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 803 GGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGAATAACCCA 862 ||||||||||| ||||||| ||| ||||||| || | || ||||| ||| |||||| Sbjct 24735507 GGGGATCTTGGTCAGAGTTTTGATTCAAACAAGACGCTTACTCATTACGAGTTAAACCCA 24735566 Query 863 ACAAAAGGGCAAGCGGTTTTGTTCGTCGGCGATATCTCATACGCTGATACTTATCCGGAT 922 |||||| || |||| ||||| || || || |||| || || || | ||||| || Sbjct 24735567 CAGAAAGGGAAAACGGTGTTGTTTGTTGGGGACCTCTCTTATGCAGACAACTATCCAAAT 24735626 Query 923 CATGACAATAGGAGATGGGACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAG 982 ||||||||| |||||||| | |||||||| || | || ||||| || ||||| Sbjct 24735627 CATGACAATGTTAGATGGGATACATGGGGAAGGTTCGTCGAGAGAAGTGTTGCATATCAA 24735686 Query 983 CCTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGAT 1032 || ||||| |||||| | || || || || | ||||| ||||| ||||| Sbjct 24735687 CCATGGATATGGACTGCAGGGAATCACGAGTTAGATTTCGCCCCTGAGAT 24735736 Score = 118 bits (130), Expect = 2e-24 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 1393 GGAACGTGTATCAAACATAGCTTACAATGTTGTTAACGGCATTTGCACTCCAGTCAAAGA 1452 |||||||||||| ||||| || |||||||| || || || |||||||| || || | ||| Sbjct 24737727 GGAACGTGTATCCAACATTGCCTACAATGTCGTAAATGGTATTTGCACACCTGTAAGAGA 24737786 Query 1453 TCAATCAGCTCCAGTCTATATCACCATTGGTGATGGAGGCAATATTGAGGGCTTGGCTAC 1512 ||||||||| || || || || ||||||||||||||||| || | || ||||| || || Sbjct 24737787 TCAATCAGCGCCTGTATACATAACCATTGGTGATGGAGGGAACCTCGAAGGCTTAGCAAC 24737846 Query 1513 CAA 1515 ||| Sbjct 24737847 CAA 24737849 Score = 109 bits (120), Expect = 1e-21 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1513 CAAAATGACTGAGCCTCAGCCTAAGTACTCTGCCTTTAGAGAAGCAAGCTTCGGGCATGC 1572 || |||||| || || ||||| ||||||| || | | | || |||||||| || ||||| Sbjct 24737947 CAGAATGACCGAACCACAGCCAGAGTACTCAGCTTATCGTGAGGCAAGCTTTGGTCATGC 24738006 Query 1573 TATATTCTCGATAAAGAACAGGACGCATGCTCACTATGGATGGCATAGGAACCATGATGG 1632 | || || |||||| | || |||||| |||| | ||||| | || |||||||| Sbjct 24738007 CACTTTTGATATCAAGAACCGAACCCATGCTTACTACAGTTGGCACCGCAATCATGATGG 24738066 Query 1633 TTATGCTGTGGAGGGTGACAGAATGTGGTTTTATAACAGATTTTGGCATCCTGTTGATGA 1692 ||||| ||||| | || |||||||||| ||||||| ||| ||| |||||||| Sbjct 24738067 ATATGCAGTGGAAGCAGATTCCATGTGGTTTTTCAACAGATACTGGAGTCCAGTTGATGA 24738126 Query 1693 TTC 1695 ||| Sbjct 24738127 TTC 24738129 Score = 98.7 bits (108), Expect = 2e-18 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 489 AGGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGGTGACAC 548 |||| || |||||||| ||||| || |||||||| ||||| ||||||||||| Sbjct 24734815 AGGTTCACATAACACAGGGAGACCATTTTGGGAAGGCAGTCATAGTTTCATGGGTGACTG 24734874 Query 549 AAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGCACCAAAAAGCACA 608 || | | || || | | ||| ||||| |||| || || |||| ||||| | Sbjct 24734875 TGGATGAACCGGGTTCCAGTACAGTGATTTATTGGAGTGAAAACAGCAAGGAAAAGAAAC 24734934 Query 609 AAGCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCATC 668 | || | ||||||| |||| || |||||||||||||| ||||||||||| || |||| Sbjct 24734935 ATGCCGAAGGCAAAATTCATACCTATAAGTTCTACAATTACACTTCTGGTTTCATTCATC 24734994 Query 669 ATTGCCCTATCAGAAACTT 687 | | |||| |||||| Sbjct 24734995 ACGCTACAATCATAAACTT 24735013 Score = 71.6 bits (78), Expect = 3e-10 Identities = 86/115 (75%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 380 TGTAATGGAGGCATCACCAGTAGATATGTCAGAAAATT--AGAAGCAACCGTTGATATGC 437 |||||||| || | || || | | ||| || ||| | ||||| || || ||||||| Sbjct 24734574 TGTAATGGGGGGAAGACGAGCACTTTTGTGAGGAAAGTTGAGAAG--ACTGTGGATATGC 24734631 Query 438 CTCTTGATAGCGATGTTTTTCGTGTTCCTTGTGGCTACAATGCTCCTCAACAGGT 492 |||| ||||||||||| |||| | ||| |||||| ||||| |||||||| || Sbjct 24734632 CTCTGGATAGCGATGTCTTTCAAATCCCTCCTGGCTATAATGCACCTCAACAAGT 24734686 Score = 39.2 bits (42), Expect = 1.6 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 1161 ATTCAGCATATGGAAAATACACAC 1184 |||||||||||| ||||||||||| Sbjct 4932373 ATTCAGCATATGTAAAATACACAC 4932396 Score = 37.4 bits (40), Expect = 5.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 124 CCTTTTAAAATTCCCAAATAAAA 146 ||||||||||||| ||||||||| Sbjct 20530697 CCTTTTAAAATTCTCAAATAAAA 20530675 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 136 bits (150), Expect = 8e-30 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 1172 GGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACG 1231 || |||||||| || || ||| |||||| || ||||| || | || || || || | Sbjct 19374186 GGTAAATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAAAGTAAATCGAGCT 19374245 Query 1232 GAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTACCAT 1291 |||||||| ||| | || ||||| | || ||||||||||| |||||| | | |||||| Sbjct 19374246 GAAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 19374305 Query 1292 TACATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTA 1351 || |||||||| |||| ||||| || | | ||| | |||||||| | |||||| Sbjct 19374306 TATATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 19374365 Query 1352 GATGTAGTTTTTGCAGGTCATGTCCACGCCTACGA 1386 || | |||||||| |||||||| || ||||| || Sbjct 19374366 GACATTGTTTTTGCTGGTCATGTTCATGCCTATGA 19374400 Score = 93.3 bits (102), Expect = 8e-17 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 881 TTGTTCGTCGGCGATATCTCATACGCTGATACTTATCCGGATCATGACAATAGGAGATGG 940 ||||| || || ||| | || || |||||| | | || | ||||||||| ||||||| Sbjct 19373521 TTGTTTGTAGGTGATCTTTCTTATGCTGATGATCACCCAAACCATGACAATGAGAGATGG 19373580 Query 941 GACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACC 1000 |||| ||||| | ||| ||| | || | || |||||||| |||||||||||| | Sbjct 19373581 GACACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCT 19373640 Query 1001 GGAAACCATGAACTCGATTTTGCCCC 1026 || || |||||||| |||| ||| || Sbjct 19373641 GGCAATCATGAACTTGATTATGCTCC 19373666 Score = 86.0 bits (94), Expect = 1e-14 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1520 ACTGAGCCTCAGCCTAAGTACTCTGCCTTTAGAGAAGCAAGCTTCGGGCATGCTATATTC 1579 ||||| || || || | || |||||||| | ||||||||||| ||||| || || | Sbjct 19374859 ACTGACCCACAACCAAGTTATTCTGCCTTCCGGGAAGCAAGCTTTGGGCACGCAATTCTG 19374918 Query 1580 TCGATAAAGAACAGGACGCATGCTCACTATGGATGGCATAGGAACCATGATGGTTATGCT 1639 | |||||||| || || |||||||||||| ||||| | ||||| ||| || ||||| Sbjct 19374919 GCTATAAAGAATAGAACCCATGCTCACTATACTTGGCACCGCAACCAAGATAGTAATGCT 19374978 Query 1640 GT 1641 || Sbjct 19374979 GT 19374980 Score = 46.4 bits (50), Expect = 0.011 Identities = 46/60 (77%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 611 GCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCATCAT 670 |||| | ||||| || ||||||| | ||| | |||||||||||||| || |||||| Sbjct 19372963 GCTCCGGCCAAAATCACCTCTTACAAATACTATACTTATACTTCTGGTTACATTCATCAT 19373022 Score = 37.4 bits (40), Expect = 5.5 Identities = 49/68 (72%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1106 CCATTCTGGTACTCGATAAAGAGAGGACCGGCTTACATAATCGTGCTAGCTTCATATTCA 1165 ||| | ||||| || || ||| | | | | || |||| || || || |||| || ||| Sbjct 19374026 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 19374085 Query 1166 GCATATGG 1173 |||||||| Sbjct 19374086 GCATATGG 19374093 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 122 bits (134), Expect = 2e-25 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 1172 GGAAAATACACACCACAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACG 1231 || |||||||| || || ||| |||||| || ||||| || | || ||||| || | Sbjct 7757932 GGTAAATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCT 7757991 Query 1232 GAAACTCCGTGGTTGATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTACCAT 1291 |||||||| ||| | || ||||| | || ||||||||||| |||||| | | |||||| Sbjct 7757992 GAAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCAT 7758051 Query 1292 TACATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTA 1351 | |||||||| |||| ||||| || | ||| | |||||||| | |||||| Sbjct 7758052 TTTATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTT 7758111 Query 1352 GATGTAGTTTTTGCAGGTCATGTCCACGCCTACGA 1386 || | || || || |||||||| || ||||| || Sbjct 7758112 GACATTGTGTTAGCCGGTCATGTTCATGCCTATGA 7758146 Score = 116 bits (128), Expect = 7e-24 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 803 GGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGAATAACCCA 862 || |||||||| || | | |||| ||||| | || | || |||||||| |||||| Sbjct 28096612 GGTGATCTTGGTCAAACTCATGATTCAAATAGGACACTCACCCATTATGAATTAAACCCA 28096671 Query 863 ACAAAAGGGCAAGCGGTTTTGTTCGTCGGCGATATCTCATACGCTGATACTTATCCGGAT 922 |||||||| || ||| |||||||| || || |||| || || ||| ||||| Sbjct 28096672 ACAAAAGGCCAGATGGTGTTGTTCGTTGGAGACCTCTCTTATGCAGATGACTATCCATTG 28096731 Query 923 CATGACAATAGGAGATGGGACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAG 982 |||||||| | || ||||| | |||||||| || || |||| | |||||||| Sbjct 28096732 CATGACAACAACAGGTGGGATACATGGGGAAGGTTCATAGAGAGAAATGCTGCTTATCAA 28096791 Query 983 CCTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGA 1029 |||||| | |||||| | || || ||||| |||||| ||| || || Sbjct 28096792 CCTTGGGTATGGACTGCAGGCAATCATGAGATCGATTATGCTCCAGA 28096838 Score = 98.7 bits (108), Expect = 2e-18 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 881 TTGTTCGTCGGCGATATCTCATACGCTGATACTTATCCGGATCATGACAATAGGAGATGG 940 ||||| | || ||| | || || || ||| | | || ||||||||||| ||||||| Sbjct 7756247 TTGTTTGCGGGTGATCTTTCTTATGCAGATGATCACCCATATCATGACAATGAGAGATGG 7756306 Query 941 GACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACC 1000 |||| ||||| | ||| ||| | || | || |||||||| |||||||||||| | Sbjct 7756307 GACACATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCT 7756366 Query 1001 GGAAACCATGAACTCGATTTTGCCCCGGAGATTG 1034 || || |||||||| |||||||| || || |||| Sbjct 7756367 GGCAATCATGAACTTGATTTTGCTCCAGAAATTG 7756400 Score = 91.5 bits (100), Expect = 3e-16 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 1393 GGAACGTGTATCAAACATAGCTTACAATGTTGTTAACGGCATTTGCACTCCAGTCAAAGA 1452 ||||||| | ||||| || || ||||||||||| || || | |||||||| | | || Sbjct 28098741 GGAACGTTTTTCAAATATCGCATACAATGTTGTAAATGGGTTGTGCACTCCCATTAGTGA 28098800 Query 1453 TCAATCAGCTCCAGTCTATATCACCATTGGTGATGGAGGCAATATTGAGGGCTTGGCTAC 1512 ||||| ||||| || || || |||||||| |||||||| ||| |||| || ||| || Sbjct 28098801 CCAATCTGCTCCTGTTTACATAACCATTGGAGATGGAGGAAATCTTGAAGGACTGGTGAC 28098860 Query 1513 CAA 1515 ||| Sbjct 28098861 CAA 28098863 Score = 89.7 bits (98), Expect = 1e-15 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 1517 ATGACTGAGCCTCAGCCTAAGTACTCTGCCTTTAGAGAAGCAAGCTTCGGGCATGCTATA 1576 ||||| ||||| ||||| | ||||| || | | ||||| ||||| || |||| || Sbjct 28098969 ATGACAGAGCCCCAGCCAAGCTACTCGGCTTACCGTGAAGCCAGCTTTGGTCATGGGATT 28099028 Query 1577 TTCTCGATAAAGAACAGGACGCATGCTCACTATGGATGGCATAGGAACCATGATGGTTAT 1636 || |||||||||||||| ||||| | | ||| |||||| | || || ||||| ||| Sbjct 28099029 TTAGACATAAAGAACAGGACTCATGCCTATTTTGGTTGGCATCGCAATCAAGATGGCTAT 28099088 Query 1637 GCTGTGGAGGGTGACAGAATGTGGTTTTATAACAGATTTTGGCATCC 1683 ||||| || | ||| | ||||| ||||||| |||| |||| Sbjct 28099089 GCTGTAGAAGCTGATTCTGTATGGTTGGCAAACAGATATTGGTATCC 28099135 Score = 86.0 bits (94), Expect = 1e-14 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1520 ACTGAGCCTCAGCCTAAGTACTCTGCCTTTAGAGAAGCAAGCTTCGGGCATGCTATATTC 1579 ||||| || || || | || ||||| || | ||||||||||| |||||||| | || Sbjct 7758506 ACTGACCCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGCAACTCTC 7758565 Query 1580 TCGATAAAGAACAGGACGCATGCTCACTATGGATGGCATAGGAACCATGATGGTTATGCT 1639 | |||||||| ||||| ||||| |||||| ||||| | ||||| ||| || ||||| Sbjct 7758566 GCTATAAAGAATAGGACCCATGCCCACTATACTTGGCACCGTAACCAAGATAGTAATGCT 7758625 Query 1640 GT 1641 || Sbjct 7758626 GT 7758627 Score = 77.0 bits (84), Expect = 6e-12 Identities = 141/205 (69%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 489 AGGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGGTGACAC 548 ||||||||||||| ||||||||| || ||||||| ||||| || || ||||| || | Sbjct 28095876 AGGTGCATATAACTCAAGGAGATCACGAGGGAAAGGGTGTGATTGTCTCTTGGGTTACTC 28095935 Query 549 AAGAAGCAAAAGGATCTAACAAAGTCATTTACTGGAAAGAGAATAGC--ACCAAAAAGCA 606 ||| | | || || | | ||| |||||||| || |||||| | |||||| Sbjct 28095936 CAGATGAACCCGGTTCAAGTACAGTGCTTTACTGGGCTGAAAATAGCCAGCTAAAAAG-- 28095993 Query 607 CAAAGCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCA 666 | ||| |||| | ||| ||||||| |||||| || ||||||| ||| || Sbjct 28095994 CCGGGCTGATGGATTTATTCGTACCTACAAGTATGTCAATTACACCTCTGGTTATATTCA 28096053 Query 667 TCATTGCCCTATCAGAAACTTAGAG 691 ||| ||| | || | || || ||| Sbjct 28096054 TCACTGCACCATTAACAATTTGGAG 28096078 Score = 69.8 bits (76), Expect = 9e-10 Identities = 62/78 (79%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1437 GCACTCCAGTCAAAGATCAATCAGCTCCAGTCTATATCACCATTGGTGATGGAGGCAATA 1496 |||| ||| | ||||| ||||| || ||| | || || || ||||||||||| || |||| Sbjct 7758309 GCACGCCAATAAAAGACCAATCTGCACCAATATACATAACAATTGGTGATGGTGGTAATA 7758368 Query 1497 TTGAGGGCTTGGCTACCA 1514 |||||||| | |||| || Sbjct 7758369 TTGAGGGCATTGCTAACA 7758386 Score = 46.4 bits (50), Expect = 0.011 Identities = 79/115 (69%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 690 AGTATGACACCAAGTACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGT 749 ||| ||||||||| ||||| |||| | | || | || | || || |||| |||| Sbjct 28096168 AGTTTGACACCAAATACTACTATGAGGTCGGGATTGGGAATACCACACGACAGTTCTGGT 28096227 Query 750 TCTTCACTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGG 804 | |||||||| | || ||||||||||| || || ||||| || || || Sbjct 28096228 TTAGAACTCCTCCAAGTGTTGGCCCTGATGTTCCATATACATTTGGCCTAATAGG 28096282 Score = 41.0 bits (44), Expect = 0.45 Identities = 66/95 (69%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1079 CCTTACCGATCATCAGGCAGCACCGAACCATTCTGGTACTCGATAAAGAGAGGACCGGCT 1138 || ||| ||||||| ||||| ||| | ||||| || || ||| | | | | || Sbjct 7757713 CCCTACAGATCATCGCAAAGCACATCCCCACTTTGGTATTCCATTAAGCGTGCATCTGCA 7757772 Query 1139 TACATAATCGTGCTAGCTTCATATTCAGCATATGG 1173 |||| || || || |||| || ||||||||||| Sbjct 7757773 CACATCATTGTCCTCTCTTCTTACTCAGCATATGG 7757807 Score = 39.2 bits (42), Expect = 1.6 Identities = 57/81 (70%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 611 GCTCATGGCAAAACCAATACTTACAAGTTCTACAATTATACTTCTGGTTTTATCCATCAT 670 |||| | ||||| || | |||| | || |||||||||||||||| || |||||| Sbjct 7755755 GCTCCCGCCAAAATCACCTCGTACAGATACTTTAATTATACTTCTGGTTACATTCATCAT 7755814 Query 671 TGCCCTATCAGAAACTTAGAG 691 | | || | || |||||| Sbjct 7755815 GCCACCATTAAAAGATTAGAG 7755835 Score = 37.4 bits (40), Expect = 5.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 262 GAAAAAATCTCTCTTTCGAATaaaaaaa 289 |||||||||||||||| |||| ||| || Sbjct 3664565 GAAAAAATCTCTCTTTTGAATTAAACAA 3664592 Score = 37.4 bits (40), Expect = 5.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 406 TGTCAGAAAATTAGAAGCAACCGTT 430 || |||||||||| ||||||||||| Sbjct 4622439 TGGCAGAAAATTAAAAGCAACCGTT 4622463 Score = 37.4 bits (40), Expect = 5.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 126 TTTTAAAATTCCCAAATAAAAACTTGATTGAAACA 160 |||||||||||| ||||||||| | ||| |||| Sbjct 6014802 TTTTAAAATTCCAAAATAAAAATTATATTCTAACA 6014768 Score = 37.4 bits (40), Expect = 5.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 126 TTTTAAAATTCCCAAATAAAAACTTGATTGAAACA 160 |||||||||||| ||||||||| | ||| |||| Sbjct 6159805 TTTTAAAATTCCAAAATAAAAATTATATTATAACA 6159771 Score = 37.4 bits (40), Expect = 5.5 Identities = 36/45 (80%), Gaps = 1/45 (2%) Strand=Plus/Plus Query 569 AAAGTCATTTACTGGAA-AGAGAATAGCACCAAAAAGCACAAAGC 612 |||| |||| ||| | | |||||| ||||||||||| | ||| || Sbjct 12148533 AAAGCCATTCACTAGTAGAGAGAAGAGCACCAAAAAACGCAATGC 12148577 Score = 37.4 bits (40), Expect = 5.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 2 TCTGGACCAGATAATTAAAAATAAATATCCAACC 35 |||||||||||||| ||||| ||| | |||||| Sbjct 16964212 TCTGGACCAGATAA--AAAAAAAAAAACCCAACC 16964181 Score = 37.4 bits (40), Expect = 5.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 263 AAAAAATCTCTCTTTCGAATaaaaaaaaaa 292 || |||||||||||| || |||||||||| Sbjct 20520043 AATAAATCTCTCTTTTTAAAAAAAAAAAAA 20520014 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 62.6 bits (68), Expect = 1e-07 Identities = 78/107 (73%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1288 CCATTACATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAA 1347 ||| || ||||||||||||| ||| | | | | |||| ||||||||| || | Sbjct 1043505 CCACTATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAG 1043564 Query 1348 AGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGG 1394 ||| ||| | || ||||| || || || || ||||| |||||||||| Sbjct 1043565 AGTTGATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATCGG 1043611 Score = 46.4 bits (50), Expect = 0.011 Identities = 37/45 (82%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1451 GATCAATCAGCTCCAGTCTATATCACCATTGGTGATGGAGGCAAT 1495 ||| ||||||||||||| || || || |||| |||||||| ||| Sbjct 1044445 GATGAATCAGCTCCAGTGTACATAACTGTTGGAGATGGAGGAAAT 1044489 Score = 44.6 bits (48), Expect = 0.037 Identities = 29/31 (94%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 279 GAATaaaaaaaaa-aTCTCAGAATCCAAAAA 308 ||||||||||||| |||| |||||||||||| Sbjct 8907117 GAATAAAAAAAAATATCTGAGAATCCAAAAA 8907147 Score = 39.2 bits (42), Expect = 1.6 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 10 AGATAATTAAAAATAAATATC 30 ||||||||||||||||||||| Sbjct 1463713 AGATAATTAAAAATAAATATC 1463693 Score = 37.4 bits (40), Expect = 5.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 942 ACAGTTGGGGAAGATTTGCTGAA 964 |||||||||||| |||||||||| Sbjct 27737119 ACAGTTGGGGAATATTTGCTGAA 27737097 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 48.2 bits (52), Expect = 0.003 Identities = 139/208 (67%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 1187 CAGTACCAATGGCTCGAAGAGGAGTTCCCAAAGGTTAACAGAACGGAAACTCCGTGGTTG 1246 |||||| | ||||| || | || || | || ||| |||| | | |||| || ||| | Sbjct 1111829 CAGTACAAGTGGCTTGAGGCCGATTTGGCCAACGTTGACAGGAAGAAAACGCCATGGATC 1111770 Query 1247 ATTGTTCTGATGCATTCACCATGGTACAACAGCTATGATTAC-CATTACATGGAAGGTGA 1305 |||| || ||||| | || ||||| |||| ||| | | ||| | ||||| || Sbjct 1111769 TTTGTGCTCTTGCATGCCCCCTGGTATAACA-CTAATACAGCACATCAAGGTGAAGGAGA 1111711 Query 1306 AACAATGAGGGTAATGTATG--AGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTT 1363 || ||||| || |||| || ||| | | | | | || || || || |||||| Sbjct 1111710 AAGCATGAGAA-AAGCTATGGAAGAGTTGCTGTATAAGGCACGG-GTCGACGTGGTTTTT 1111653 Query 1364 GCAGGTCATGTCCACGCCTACGAAAGAT 1391 ||||| ||||| || || || ||| ||| Sbjct 1111652 GCAGGCCATGTTCATGCATATGAACGAT 1111625 Score = 39.2 bits (42), Expect = 1.6 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 10 AGATAATTAAAAATAAATATC 30 ||||||||||||||||||||| Sbjct 7289794 AGATAATTAAAAATAAATATC 7289774 Score = 39.2 bits (42), Expect = 1.6 Identities = 36/44 (82%), Gaps = 4/44 (9%) Strand=Plus/Plus Query 268 ATCTCTCTTTCGAATaaaaaaaaaaTCTCAGAATCC--AAAAAT 309 ||||||||||| | |||||||||| || |||||| |||||| Sbjct 32259356 ATCTCTCTTTCCATGAAAAAAAAAA--TCCGAATCCTGAAAAAT 32259397 Score = 37.4 bits (40), Expect = 5.5 Identities = 40/53 (75%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 1463 CCAGTCTATATCACCATTGGTGATGGAGGCAATATTGAGGGCTTGGCTACCAA 1515 ||||| ||||||||||||| ||||| || || | || ||| | || | ||| Sbjct 1142916 CCAGTGCATATCACCATTGGCGATGGTGGAAACAGAGAAGGCCTTGCCAGCAA 1142968 Score = 37.4 bits (40), Expect = 5.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1157 TCATATTCAGCATATGGAAAATACA 1181 |||||| ||||||||||||||| || Sbjct 4840170 TCATATCCAGCATATGGAAAATGCA 4840194 Score = 37.4 bits (40), Expect = 5.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 538 ATGGGTGACACAAGAAGCAAAAGGA 562 || ||||||||||||| |||||||| Sbjct 16119642 ATTGGTGACACAAGAAACAAAAGGA 16119618 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 48.2 bits (52), Expect = 0.003 Identities = 46/59 (78%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 489 AGGTGCATATAACACAAGGAGATGTAGAAGGAAAGGCAGTGATAGTATCATGGGTGACA 547 |||||||||| || ||||| || || |||||||| || || | |||||||||||| Sbjct 40283966 AGGTGCATATTACCCAAGGCGACTACGATGGAAAGGCTGTAATCATCTCATGGGTGACA 40283908 Score = 46.4 bits (50), Expect = 0.011 Identities = 79/115 (69%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 690 AGTATGACACCAAGTACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGT 749 |||||||||||||||||||||| |||||| || | | || | ||||||| Sbjct 40283124 AGTATGACACCAAGTACTATTACAAGTTAGGGAGTGGTGATTCTTCTCGAGAATTTTGGT 40283065 Query 750 TCTTCACTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGG 804 | || ||||| |||| | ||| |||| | | ||| |||||| |||| || Sbjct 40283064 TTCAAACACCTCCAAAGATTGATCCAGATGCTACTTACCATTTTGGGATCATCGG 40283010 Score = 39.2 bits (42), Expect = 1.6 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 124 CCTTTTAAAATTCCCAAATAAAAA 147 |||||| ||||||||||||||||| Sbjct 31587599 CCTTTTCAAATTCCCAAATAAAAA 31587576 Score = 39.2 bits (42), Expect = 1.6 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 566 AACAAAGTCATTTACTGGAAAGAGAATAGCA 596 ||||||||||| |||||||| |||| |||| Sbjct 36943010 AACAAAGTCATCAACTGGAAAAAGAAAAGCA 36943040 Score = 37.4 bits (40), Expect = 5.5 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 534 TATC-ATGGGTGACACAAGAAGCAAAAGGATCTAACA 569 |||| || |||| || ||||||||||||||| |||| Sbjct 8550496 TATCTATAGGTGTCAAAAGAAGCAAAAGGATTGAACA 8550532 Score = 37.4 bits (40), Expect = 5.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 10 AGATAATTAAAAATAAATAT 29 |||||||||||||||||||| Sbjct 34171654 AGATAATTAAAAATAAATAT 34171673 Score = 37.4 bits (40), Expect = 5.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1110 TCTGGTACTCGATAAAGAGA 1129 |||||||||||||||||||| Sbjct 34315191 TCTGGTACTCGATAAAGAGA 34315210 Score = 37.4 bits (40), Expect = 5.5 Identities = 47/65 (72%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1112 TGGTACTCGATAAAGAGAGGACCGGCTTACATAATCGTGCTAGCTTCATATTCAGCATAT 1171 |||||||| || | | | | | | ||| | |||||||||||| | |||||| ||| | Sbjct 40281692 TGGTACTCCATCAGGCGTGCATCTGCTCATATAATCGTGCTATCCAGCTATTCATCATTT 40281633 Query 1172 GGAAA 1176 || || Sbjct 40281632 GGTAA 40281628 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 46.4 bits (50), Expect = 0.011 Identities = 56/77 (73%), Gaps = 6/77 (8%) Strand=Plus/Plus Query 1106 CCATTCTGGTACTCGATAAAGAGAGGACCGGCTTACATAATCGTGCTAG------CTTCA 1159 || || ||||| || || ||||||| | |||||||| || | |||| ||||| Sbjct 276148 CCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATACTACTAGTGTTGTCTTCA 276207 Query 1160 TATTCAGCATATGGAAA 1176 ||||||||||| || || Sbjct 276208 TATTCAGCATACGGTAA 276224 Score = 39.2 bits (42), Expect = 1.6 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 114 TAATACCTTTCCTTTTAAAATTCCCAAATAAAAA 147 ||| || ||||||||||||| | ||||| ||||| Sbjct 665869 TAAAACTTTTCCTTTTAAAAATACCAAAAAAAAA 665836 Score = 37.4 bits (40), Expect = 5.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 113 TTAATACCTTTCCTTTTAAAATT 135 ||||||||| ||||||||||||| Sbjct 3174991 TTAATACCTGTCCTTTTAAAATT 3174969 Score = 37.4 bits (40), Expect = 5.5 Identities = 32/39 (82%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 78 AAACAATACAAAAACCAAAGTTAAAGAAATAGAATTTAA 116 ||| | || ||||| ||||||||||| |||||||| || Sbjct 17537850 AAAGATTAGAAAAA--AAAGTTAAAGATATAGAATTGAA 17537814 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 42.8 bits (46), Expect = 0.13 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1172 GGAAAATACACACCACAGTACCAATGGCTCGAAGAGGA 1209 || ||||| || || || |||||||| ||||||||||| Sbjct 13840848 GGTAAATATACGCCTCAATACCAATGCCTCGAAGAGGA 13840885 Score = 41.0 bits (44), Expect = 0.45 Identities = 37/45 (82%), Gaps = 4/45 (9%) Strand=Plus/Minus Query 1739 TGTATCTCTATGATTGAACA-ACCA---TCCAAATAAATGAATTG 1779 ||| | |||||||||||||| | || |||||||| |||||||| Sbjct 31414093 TGTCTGTCTATGATTGAACAGATCAGTGTCCAAATAGATGAATTG 31414049 Score = 39.2 bits (42), Expect = 1.6 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 566 AACAAAGTCATTTACTGGAAAGAGAATAGCA 596 ||||||||||| |||||||| |||| |||| Sbjct 5601146 AACAAAGTCATCAACTGGAAAAAGAAAAGCA 5601176 Score = 39.2 bits (42), Expect = 1.6 Identities = 33/39 (85%), Gaps = 4/39 (10%) Strand=Plus/Minus Query 1745 TCTATGATTGAACA-ACCA---TCCAAATAAATGAATTG 1779 |||||||||||||| | || |||||||| |||||||| Sbjct 31323390 TCTATGATTGAACAGATCAGTGTCCAAATAGATGAATTG 31323352 Score = 37.4 bits (40), Expect = 5.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1084 CCGATC-ATCAGGCAGCACCGAACCAT 1109 |||||| |||| ||||||||||||||| Sbjct 1519624 CCGATCCATCAAGCAGCACCGAACCAT 1519650 Score = 37.4 bits (40), Expect = 5.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 240 TTTTTTCTCCCTTTGTTTATCGGAAAAAATCTCTCTTT 277 |||| ||| | ||| ||| || ||||||||||||||| Sbjct 11434902 TTTTATCTTCTTTTTTTTTTCAAAAAAAATCTCTCTTT 11434865 Score = 37.4 bits (40), Expect = 5.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1692 ATTCTCCTTCTTGTAATTCT 1711 |||||||||||||||||||| Sbjct 20189899 ATTCTCCTTCTTGTAATTCT 20189880 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 42.8 bits (46), Expect = 0.13 Identities = 25/26 (96%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 82 AATACAAAAACCAAAGTTAAAGAAAT 107 |||||||||||||||||||||| ||| Sbjct 1501969 AATACAAAAACCAAAGTTAAAGCAAT 1501944 Score = 39.2 bits (42), Expect = 1.6 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 566 AACAAAGTCATTTACTGGAAAGAGAATAGCA 596 ||||||||||| |||||||| |||| |||| Sbjct 14809071 AACAAAGTCATCAACTGGAAAAAGAAAAGCA 14809101 Score = 39.2 bits (42), Expect = 1.6 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 280 AATaaaaaaaaaaTCTCAGAATCCAAAA 307 || |||||||||||| |||||||||||| Sbjct 15165131 AAAAAAAAAAAAATC-CAGAATCCAAAA 15165105 Score = 37.4 bits (40), Expect = 5.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1261 TTCACCATGGTACAACAG-CTATGATTACCAT 1291 |||| ||||||||||||| |||| || ||||| Sbjct 13226509 TTCAACATGGTACAACAGCCTATTATGACCAT 13226540 Score = 37.4 bits (40), Expect = 5.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 100 AAAGAAATAGAATTTAATACCTTTCCTTTT 129 ||||||||| ||||||||||| || |||| Sbjct 21846881 AAAGAAATATAATTTAATACCCATCTTTTT 21846852 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 41.0 bits (44), Expect = 0.45 Identities = 31/36 (86%), Gaps = 3/36 (8%) Strand=Plus/Minus Query 101 AAGAAATAGA---ATTTAATACCTTTCCTTTTAAAA 133 || ||||||| ||||||| ||||||||||||||| Sbjct 9116322 AACAAATAGATCGATTTAATTCCTTTCCTTTTAAAA 9116287 Score = 37.4 bits (40), Expect = 5.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 509 GATGTAGAAGGAAAGGCAGTGATAGTAT 536 |||| ||||| |||||||||||||| || Sbjct 7157752 GATGAAGAAGAAAAGGCAGTGATAGGAT 7157779 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 41.0 bits (44), Expect = 0.45 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 265 AAAATCTCTCTTTCGAATaaaaaaaaa 291 ||||| ||||||||||| ||||||||| Sbjct 32157345 AAAATATCTCTTTCGAACAAAAAAAAA 32157319 Score = 37.4 bits (40), Expect = 5.5 Identities = 35/45 (78%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 1466 GTCTATATCACCATTGGTGATGGAGGCAATATTGAGGGCTTGGCT 1510 ||| | || ||||||||||||||||| || | || || || ||| Sbjct 36165743 GTCCACATAACCATTGGTGATGGAGGAAACAGAGAAGGTTTAGCT 36165699 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 1.6 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 566 AACAAAGTCATTTACTGGAAAGAGAATAGCA 596 ||||||||||| |||||||| |||| |||| Sbjct 13827033 AACAAAGTCATCAACTGGAAAAAGAAAAGCA 13827063 Score = 37.4 bits (40), Expect = 5.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 88 AAAACCAAAGTTAAAGAAATAGAAT 112 ||||||||||| ||||||| ||||| Sbjct 19248931 AAAACCAAAGTAAAAGAAAGAGAAT 19248955 Score = 37.4 bits (40), Expect = 5.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 88 AAAACCAAAGTTAAAGAAATAGAATTTAAT 117 |||||| || |||||| |||||||||||| Sbjct 22726840 AAAACCCAATTTAAAGGTATAGAATTTAAT 22726869 >Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 Length=1158772 Score = 37.4 bits (40), Expect = 5.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 613 TCATGGCAAAACCAATACTTACAAG 637 ||| ||||||| ||||||||||||| Sbjct 883460 TCAAGGCAAAATCAATACTTACAAG 883436 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 5.5 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 77 CAAACAATACAAAAACCAAAGTTAAAGAAATAGAATTTAATA 118 |||| ||| |||||| |||| | ||||||||||||| ||| Sbjct 8954947 CAAAAAAT-CAAAAATCAAAATCTGAGAAATAGAATTTCATA 8954907 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 37.4 bits (40), Expect = 5.5 Identities = 30/36 (83%), Gaps = 3/36 (8%) Strand=Plus/Minus Query 84 TACAAAAACCAAAGTTAAAGAAA---TAGAATTTAA 116 ||||||||| | ||||||||||| ||||||| || Sbjct 31032568 TACAAAAACTAGAGTTAAAGAAAAATTAGAATTAAA 31032533 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 5.5 Identities = 35/45 (78%), Gaps = 5/45 (11%) Strand=Plus/Minus Query 12 ATAATTAAAAATAAATATCCAACCGTTCGTT-----AACATATTC 51 |||||||||||| ||| || ||| |||||| ||||||||| Sbjct 29243484 ATAATTAAAAATCAATTTCAAACTTTTCGTTATCTCAACATATTC 29243440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 968821302516 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2