BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1326 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr7S 192 8e-47 lcl|Jr4D 172 8e-41 lcl|Jr3S 145 1e-32 lcl|Jr3D 120 4e-25 lcl|Jr2D 91.5 2e-16 lcl|Jr4S 75.2 2e-11 lcl|Jr6D 50.0 6e-04 lcl|Jr5D 42.8 0.093 lcl|Jr6S 39.2 1.1 lcl|Jr1S 39.2 1.1 lcl|Jr8S 37.4 3.9 lcl|Jr2S 37.4 3.9 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 192 bits (212), Expect = 8e-47 Identities = 174/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 799 AAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAGAG 858 || ||||| || || || | ||||||||| | ||||||| ||||| || ||| | || Sbjct 19374189 AAATACACTCCTCAATACACTTGGCTCCAAAAGGAGCTCACCAAAGTAAATCGAGCTGAA 19374248 Query 859 ACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 918 ||| ||||||| || ||||| ||||| | |||||||| |||||||| || || || ||| Sbjct 19374249 ACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTAT 19374308 Query 919 ATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCGAT 978 |||||||| || ||||||||||| || || || | ||||| || |||| |||||| || Sbjct 19374309 ATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGAC 19374368 Query 979 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATCA 1017 || || ||||||||||||||||||||||| ||||| ||| Sbjct 19374369 ATTGTTTTTGCTGGTCATGTTCATGCCTATGAGCGTTCA 19374407 Score = 104 bits (114), Expect = 3e-20 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 671 CCTTT-AAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACATCT 729 ||||| ||||| || | ||| | |||||||| || |||| | | || || |||||||| Sbjct 19373966 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAGAGTACATCC 19374025 Query 730 CCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCTTCTTACTCA 789 ||||||||||| || ||||| || || || | ||||||| || ||||||||||||||| Sbjct 19374026 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 19374085 Query 790 GCTTATG 796 || |||| Sbjct 19374086 GCATATG 19374092 Score = 96.9 bits (106), Expect = 5e-18 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 1137 CAGTTTCACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCAAGTTTTGGACACGC 1196 |||||| || || || ||||||||||| || || || |||| ||||| ||||| ||||| Sbjct 19374852 CAGTTTTACTGACCCACAACCAAGTTATTCTGCCTTCCGGGAAGCAAGCTTTGGGCACGC 19374911 Query 1197 CCTTTTGGAAATAAAGAACAGGACTCATGCACATTACACTTGGCATAGGAATAAAGAAGA 1256 || ||| |||||||| || || ||||| || || |||||||| | || |||| Sbjct 19374912 AATTCTGGCTATAAAGAATAGAACCCATGCTCACTATACTTGGCACCGCAACCAAGATAG 19374971 Query 1257 CGAGGCTGTTATTGCAGATTCTATTTGGTTGAAGAAAAGATACTACTTGCC 1307 | |||||| ||| |||||| ||||| | | || || |||| || || Sbjct 19374972 TAATGCTGTTGCTGCTGATTCTCTTTGGATATACAACAGGCACTATTTTCC 19375022 Score = 80.6 bits (88), Expect = 4e-13 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 508 TTTGTCGGAGATTTGTCCTATGCTGATGACCATCCCAACCACGACCAAAGA-AAATGGGA 566 ||||| || ||| | || ||||||||||| || || ||||| || ||| || | |||||| Sbjct 19373524 TTTGTAGGTGATCTTTCTTATGCTGATGATCACCCAAACCATGA-CAATGAGAGATGGGA 19373582 Query 567 TTCATACGGCCGCTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGAGTTGGGCTGCAGG 626 ||| ||||||||| | || || || ||||||||||| |||| |||| |||| || Sbjct 19373583 CACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGG 19373642 Query 627 GAACTACGAGATAGATTACGC 647 || | || | ||||| || Sbjct 19373643 CAATCATGAACTTGATTATGC 19373663 Score = 66.2 bits (72), Expect = 8e-09 Identities = 75/101 (74%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1039 TACAATATCACTGATGGAATGAGTACTCCGGTGAAAGATCAAAATGCTCCGATTTACATT 1098 |||||||| || |||||| | || || || | || || ||| ||| || || ||||| Sbjct 19374519 TACAATATAACAGATGGACTCAGCACGCCAATAAAGGACCAATCTGCACCAATATACATA 19374578 Query 1099 ACCATTGGAGATGGAGGCAACATAGAAGGAATCGCTAACAG 1139 || ||||||||||| || || | ||||| || ||| |||| Sbjct 19374579 ACAATTGGAGATGGCGGTAATGTTGAAGGCATTGCTGACAG 19374619 Score = 53.6 bits (58), Expect = 5e-05 Identities = 40/47 (85%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 383 ACCCCTCCAAAAGTCGGTCCAGATGTTCCCTACACATTCGGTATTAT 429 || ||||| ||||| || ||||||||||| |||||||| || ||||| Sbjct 19373298 ACTCCTCCCAAAGTGGGGCCAGATGTTCCATACACATTTGGCATTAT 19373344 Score = 37.4 bits (40), Expect = 3.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1276 TCTATTTGGTTGAAGAAAAGATACTACT 1303 ||||||||||||||| |||||| || || Sbjct 387917 TCTATTTGGTTGAAGGAAAGATTCTTCT 387890 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1299 CTACTTGCCGGAGGAGGAGA 1318 |||||||||||||||||||| Sbjct 6469315 CTACTTGCCGGAGGAGGAGA 6469334 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 172 bits (190), Expect = 8e-41 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 799 AAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAGAG 858 || ||||| || || || | |||||| || | ||||||| |||||||| ||| | || Sbjct 7757935 AAATACACTCCTCAATACACTTGGCTCAAACAGGAGCTCACCAAAGTTAATCGAGCTGAA 7757994 Query 859 ACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 918 ||| ||||||| || ||||| ||||| | |||||||| |||||||| || || || | | Sbjct 7757995 ACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATTTT 7758054 Query 919 ATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCGAT 978 |||||||| || ||||||||||| | || || | ||||| || |||| |||||| || Sbjct 7758055 ATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTGAC 7758114 Query 979 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || || || || ||||||||||||||||| ||||| || Sbjct 7758115 ATTGTGTTAGCCGGTCATGTTCATGCCTATGAGCGTTC 7758152 Score = 102 bits (112), Expect = 1e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 911 ATCACTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACA 970 |||| ||||||||||| || | ||||||||| | | |||| |||||| || || | | Sbjct 28097844 ATCATTATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATA 28097903 Query 971 AAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 |||| ||| | |||||||||||||||||||||||||| || ||||| Sbjct 28097904 AAGTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 28097949 Score = 100 bits (110), Expect = 4e-19 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 671 CCTTT-AAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACATCT 729 ||||| ||||| || | ||| | |||||||| || |||| | | || ||||| ||||| Sbjct 7757680 CCTTTCAAGCCCTATATGAACAGATACCACGTGCCCTACAGATCATCGCAAAGCACATCC 7757739 Query 730 CCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCTTCTTACTCA 789 ||||||||||| || || || || || || | ||||||| || ||||||||||||||| Sbjct 7757740 CCACTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTCTTCTTACTCA 7757799 Query 790 GCTTATG 796 || |||| Sbjct 7757800 GCATATG 7757806 Score = 95.1 bits (104), Expect = 2e-17 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1137 CAGTTTCACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCAAGTTTTGGACACGC 1196 ||||||||| || || ||||||||||| || || || |||| ||||| ||||| || || Sbjct 7758499 CAGTTTCACTGACCCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGC 7758558 Query 1197 CCTTTTGGAAATAAAGAACAGGACTCATGCACATTACACTTGGCATAGGAATAAAGAAGA 1256 | | | |||||||| ||||| ||||| || || |||||||| | || |||| Sbjct 7758559 AACTCTCGCTATAAAGAATAGGACCCATGCCCACTATACTTGGCACCGTAACCAAGATAG 7758618 Query 1257 CGAGGCTGTTATTGCAGATTCTATTTGGTT 1286 | |||||| ||| |||||| ||||||| Sbjct 7758619 TAATGCTGTTGCTGCTGATTCTCTTTGGTT 7758648 Score = 89.7 bits (98), Expect = 7e-16 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 1137 CAGTTTCACCGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCAAGTTTTGGACACGC 1196 |||| | || || ||||| ||||| |||||||| | | || || || ||||| || | Sbjct 28098965 CAGTATGACAGAGCCCCAGCCAAGCTACTCGGCTTACCGTGAAGCCAGCTTTGGTCATGG 28099024 Query 1197 CCTTTTGGAAATAAAGAACAGGACTCATGCACATTACACTTGGCATAGGAATAAAGAAGA 1256 |||| || |||||||||||||||||||| ||| ||||||| | ||| |||| | Sbjct 28099025 GATTTTAGACATAAAGAACAGGACTCATGCCTATTTTGGTTGGCATCGCAATCAAGATGG 28099084 Query 1257 CGAGGCTGTTATTGCAGATTCTATTTGGTTGAAGAAAAGATA 1298 | | ||||| || |||||| | |||||| || ||||| Sbjct 28099085 CTATGCTGTAGAAGCTGATTCTGTATGGTTGGCAAACAGATA 28099126 Score = 84.2 bits (92), Expect = 3e-14 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 661 GAGACTCAACCCTTTAAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAA 720 || ||| |||||||||||| || | |||||||| || || || || |||| || | Sbjct 28097063 GAAACTACACCCTTTAAGCCTTATACAAATCGTTATCATGTACCATATGAAGCATCAGAT 28097122 Query 721 AGTACATCTCCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCT 780 |||||||| || |||||||||| ||||| |||| || | || ||||| || | || Sbjct 28097123 AGTACATCCCCCTTTTGGTACTCCATCAAGAGAGCTTCAGCCTATATCATTGTCATGTCG 28097182 Query 781 TCTTACTCAGCTTATG 796 || ||| |||||| || Sbjct 28097183 TCCTACACAGCTTTTG 28097198 Score = 59.0 bits (64), Expect = 1e-06 Identities = 41/47 (87%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 383 ACCCCTCCAAAAGTCGGTCCAGATGTTCCCTACACATTCGGTATTAT 429 || ||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 7756003 ACTCCTCCCAAAGTAGGGCCAGATGTTCCATACACATTTGGTATTAT 7756049 Score = 53.6 bits (58), Expect = 5e-05 Identities = 87/123 (71%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 508 TTTGTCGGAGATTTGTCCTATGCTGATGACCATCCCAACCACGACCAAAGAAA-ATGGGA 566 |||| || ||| | || ||||| ||||| || || | || ||| || || | |||||| Sbjct 7756250 TTTGCGGGTGATCTTTCTTATGCAGATGATCACCCATATCATGAC-AATGAGAGATGGGA 7756308 Query 567 TTCATACGGCCGCTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGAGTTGGGCTGCAGG 626 ||| || || ||| | || || || ||||||||||| |||| |||| |||| || Sbjct 7756309 CACATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGG 7756368 Query 627 GAA 629 || Sbjct 7756369 CAA 7756371 Score = 53.6 bits (58), Expect = 5e-05 Identities = 58/77 (75%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1052 ATGGAATGAGTACTCCGGTGAAAGATCAAAATGCTCCGATTTACATTACCATTGGAGATG 1111 |||| || | ||||| | | || ||| |||||| ||||||| ||||||||||||| Sbjct 28098776 ATGGGTTGTGCACTCCCATTAGTGACCAATCTGCTCCTGTTTACATAACCATTGGAGATG 28098835 Query 1112 GAGGCAACATAGAAGGA 1128 |||| || | |||||| Sbjct 28098836 GAGGAAATCTTGAAGGA 28098852 Score = 37.4 bits (40), Expect = 3.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 158 CTCCTGAACAAGTTCACATAACA 180 ||||||||||||| ||||||||| Sbjct 2948654 CTCCTGAACAAGTACACATAACA 2948632 Score = 37.4 bits (40), Expect = 3.9 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 271 AGTAGTGATGGTAGTGATAATAAAAATG 298 ||||||||||| | |||| ||||||||| Sbjct 32726065 AGTAGTGATGGCATTGATTATAAAAATG 32726092 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 145 bits (160), Expect = 1e-32 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 799 AAGTACACACCGCAGAACTCGTGGCTCCAAGATGAGCTCAAGAAAGTTAACCGATCAGAG 858 || || ||||| || || | |||||| |||| || || ||||||||| | | ||| Sbjct 24737159 AAATATACACCTCAATACACATGGCTCGAAGAGGAACTACCGAAAGTTAATAGGGCCGAG 24737218 Query 859 ACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACTAT 918 || | |||||||||||||| || | || ||||| || ||| |||| ||||| ||| Sbjct 24737219 ACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCATTAT 24737278 Query 919 ATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCGAT 978 ||||| || || | ||||||||| | ||| ||| | ||||| || | | ||||| ||| Sbjct 24737279 ATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTATAAAGTTGAT 24737338 Query 979 ATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 | || |||||||||||||||||||| || |||||||| Sbjct 24737339 GTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24737376 Score = 60.8 bits (66), Expect = 3e-07 Identities = 75/103 (73%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1025 TATCCAACATTCATTACAATATCACTGATGGAATGAGTACTCCGGTGAAAGATCAAAATG 1084 ||||||||||| |||||| || |||| || | || || || | ||||||| | Sbjct 24737735 TATCCAACATTGCCTACAATGTCGTAAATGGTATTTGCACACCTGTAAGAGATCAATCAG 24737794 Query 1085 CTCCGATTTACATTACCATTGGAGATGGAGGCAACATAGAAGG 1127 | || | ||||| |||||||| |||||||| ||| | ||||| Sbjct 24737795 CGCCTGTATACATAACCATTGGTGATGGAGGGAACCTCGAAGG 24737837 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 120 bits (132), Expect = 4e-25 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 841 AAAGTTAACCGATCAGAGACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAAC 900 ||||||||| | | ||||| | ||| |||||||||| | || | || ||||| || Sbjct 5532665 AAAGTTAACAGGACTGAGACACCTTGGTTGATTGTTCTTATGCATTCCCCCTGGTATAAT 5532606 Query 901 AGCAATAATTATCACTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTC 960 ||| | || ||||| |||||||| || || | ||||||||| | || ||| |||||| Sbjct 5532605 AGCTACAACTATCATTATATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTT 5532546 Query 961 GTCGAAAACAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || | ||||||| ||| | || ||||| |||||||||||||| || || ||||| Sbjct 5532545 GTGAAGTACAAAGTTGATGTGGTATTTGCAGGTCATGTTCATGCTTATGAACGATC 5532490 Score = 111 bits (122), Expect = 2e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 668 AACCCTTTAAGCCATACAAGAATCGTTACCACGTTCCTTACAAAGCCTCCCAAAGTACAT 727 |||| |||||||| |||| ||||||||||| || ||||||||||| || | ||||| Sbjct 5532996 AACCTTTTAAGCCTTACACTAATCGTTACCATGTGCCTTACAAAGCTTCAAACAGTACTG 5532937 Query 728 CTCCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATCGTACTCTCTTCTTACT 787 |||| ||||||| |||||||| |||| || |||||||||| || | |||| |||| Sbjct 5532936 CTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGTCTTGGCTTCATACT 5532877 Query 788 CAGCTTATG 796 |||| |||| Sbjct 5532876 CAGCATATG 5532868 Score = 66.2 bits (72), Expect = 8e-09 Identities = 89/124 (72%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 1177 GAGGCAAGTTTTGGACACGCCCTTTTGGAAATAAAGAACAGGACTCATGCACATTACACT 1236 |||||||||||||| || ||| || || || |||||| | || ||||| | |||| | Sbjct 5531914 GAGGCAAGTTTTGGTCATGCCACCTTTGATATCAAGAACCGAACCCATGCTTACTACAGT 5531855 Query 1237 TGGCATAGGAATAAAGAAGACGAGGCTGTTATTGCAGATTCTATTTGGTTGAAGAAAAGA 1296 ||||| | ||| |||| | | || || ||||||||||| ||||| || ||| Sbjct 5531854 TGGCACCGTAATCAAGATGGATATGCGGTGGAAGCAGATTCTATGTGGTTTTTCAACAGA 5531795 Query 1297 TACT 1300 |||| Sbjct 5531794 TACT 5531791 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 91.5 bits (100), Expect = 2e-16 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 857 AGACTTCATGGCTGATTGTTCTGGTTCACGCTCCATGGTACAACAGCAATAATTATCACT 916 ||||| | ||||| |||||||| | || | ||| ||||| |||||| | ||||| Sbjct 40280798 AGACTCCTTGGCTCATTGTTCTTATGCATGTGCCAATCTACAATAGCAATGAAGCTCACT 40280739 Query 917 ATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAAGTCG 976 | ||||| || || || ||| ||| | || ||| |||||| || | ||||||| | Sbjct 40280738 ACATGGAGGGGGAAAGTATGCGAGCTGTATTTGAGAGTTGGTTCATCCATTACAAAGTTG 40280679 Query 977 ATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || | ||||||||||| ||||| ||||| || || |||| Sbjct 40280678 ATGTAGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATC 40280639 Score = 42.8 bits (46), Expect = 0.093 Identities = 50/68 (74%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 712 GCCTCCCAAAGTACATCTCCACTTTGGTACTCAATCAAACGAGCCTCGACTTACATCATC 771 |||||| |||||| ||| ||||||||||| |||| || || || || | || ||| Sbjct 40281716 GCCTCCAAAAGTAGCAGTCCTCTTTGGTACTCCATCAGGCGTGCATCTGCTCATATAATC 40281657 Query 772 GTACTCTC 779 || || || Sbjct 40281656 GTGCTATC 40281649 Score = 37.4 bits (40), Expect = 3.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1248 TAAAGAAGACGAGGCTGTTATTGCA 1272 ||||| ||||||||||| ||||||| Sbjct 21308237 TAAAGGAGACGAGGCTGATATTGCA 21308261 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 75.2 bits (82), Expect = 2e-11 Identities = 79/104 (76%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 913 CACTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTCGAAAACAAA 972 ||||||||||||||||| || ||| ||| | || ||| |||||| ||| | | | Sbjct 1043506 CACTATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGA 1043565 Query 973 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGATC 1016 || ||| |||| |||||||| || ||||||||||| || |||| Sbjct 1043566 GTTGATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATC 1043609 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 50.0 bits (54), Expect = 6e-04 Identities = 38/45 (84%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 969 CAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCG 1013 ||| || ||||| || ||||||||||||||||||| ||||| || Sbjct 36165907 CAATGTGGATATAGTACTTGCTGGTCATGTTCATGCTTACGAACG 36165863 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 42.8 bits (46), Expect = 0.093 Identities = 34/41 (83%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 973 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCG 1013 |||||| | || |||||||| ||||||||||| || || || Sbjct 1123458 GTCGATTTGGTTTTTGCTGGACATGTTCATGCATATGAACG 1123418 Score = 37.4 bits (40), Expect = 3.9 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 973 GTCGATATCGTCTTTGCTGGTCATGTTCATGCCTACGAGCGAT 1015 ||||| | || ||||| || ||||||||||| || || |||| Sbjct 1111667 GTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGAACGAT 1111625 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 1.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1267 ATTGCAGATTCTATTTGGTTGAAGAA 1292 |||||||||||| |||||||||| || Sbjct 13892775 ATTGCAGATTCTGTTTGGTTGAATAA 13892750 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 1.1 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 532 GATGACCATCCCAACCACGACCAAAG 557 ||||||||||||||| || ||||||| Sbjct 20319041 GATGACCATCCCAACAACAACCAAAG 20319016 Score = 37.4 bits (40), Expect = 3.9 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 275 GTGATGGTAGTGATAATAAAAAT 297 |||||||||||||||| |||||| Sbjct 851262 GTGATGGTAGTGATAAAAAAAAT 851240 Score = 37.4 bits (40), Expect = 3.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 544 AACCACGACCAAAGAAAATGGGATT 568 || ||||| |||||||||||||||| Sbjct 1165219 AAACACGAGCAAAGAAAATGGGATT 1165243 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 6947784 CAGATTCTATTTGGTTGAAG 6947803 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 37.4 bits (40), Expect = 3.9 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1271 CAGATTCTATTTGGTTGAAG 1290 |||||||||||||||||||| Sbjct 18132437 CAGATTCTATTTGGTTGAAG 18132418 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 37.4 bits (40), Expect = 3.9 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1274 ATTCTATTTGGTTGAAGAAAAGATA 1298 |||||||||||||||||| || ||| Sbjct 736574 ATTCTATTTGGTTGAAGAGAATATA 736598 Score = 37.4 bits (40), Expect = 3.9 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1033 ATTCATTACAATATCACTGATGGAATGAGT 1062 |||| | | |||||||||||||||| |||| Sbjct 27776307 ATTCTTGAGAATATCACTGATGGAAGGAGT 27776336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692397217470 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2