BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1658 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr8D 111 3e-22 lcl|Jr8S 96.9 6e-18 lcl|Jr3S 71.6 2e-10 lcl|Jr3D 51.8 2e-04 lcl|Jr5D 48.2 0.003 lcl|Jr7S 41.0 0.41 lcl|Jr5S 41.0 0.41 lcl|Jr2S 41.0 0.41 lcl|Jr2D 41.0 0.41 lcl|Jr1D 41.0 0.41 lcl|Jr6S 39.2 1.4 lcl|Jr4S 39.2 1.4 lcl|Jr4D 39.2 1.4 lcl|Jr1S 39.2 1.4 lcl|JrScfU0023 37.4 5.0 lcl|JrScfU0004 37.4 5.0 lcl|Jr7D 37.4 5.0 lcl|Jr6D 37.4 5.0 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 111 bits (122), Expect = 3e-22 Identities = 154/211 (73%), Gaps = 10/211 (5%) Strand=Plus/Minus Query 1190 CAGTCCTATTCAGTTTCTAACTAGTGGTGCTGGATCCAAGGCTTGGAGAGGAGATATTAA 1249 ||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 30161826 CAGCCCTATACAATTTCTAACTAGTGGAGCTGGGTCCAAGGCATGGAGAGGAGACATTAA 30161767 Query 1250 CCCAGTGACCATCAATCCCAAGCT--ACTGAAATTCTATTATGATGGTCAAGGATTCATG 1307 || ||| | ||| || | ||||| |||| |||||||| || || |||||| Sbjct 30161766 ---AG-GAC--TGAAT--AGAGGTGGCCTGAAGTTCTTCTATGATGGACAGGGTTTCATG 30161715 Query 1308 TCTGCTCGGTTCACTCACTCGGACGCAGAGATCGTCTTCTACGATGTCTTTGGTGAGATT 1367 |||| | | | | | ||| ||||| || | ||||| ||||| ||||| ||||| Sbjct 30161714 TCTGTCCAGCTGAACAAGATGGATGCAGAAATTATATTCTATGATGTTTTTGGCAAGATT 30161655 Query 1368 TTGCACAAATGGGTCACTTCTAAACAACTTC 1398 ||||||| ||| || || || || |||| Sbjct 30161654 TTGCACAGTTGGAGAACATCGAAGCAGCTTC 30161624 Score = 102 bits (112), Expect = 1e-19 Identities = 124/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 592 TTGCTTATCAGATGGGAAAAATTGGAGAGAAGATTGACTTAGATTTCGTGGTGTCTACGG 651 |||||| | ||||||||| |||||||||||| | ||| | | || || || || || | Sbjct 30163048 TTGCTTGT-AGATGGGAAGGATTGGAGAGAAGCTAGACATCAACTTTGTAGTTTCAACAG 30162990 Query 652 GAGATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATCTT 711 ||||||| ||||| || ||||| || ||||||||| ||| || || || |||| | Sbjct 30162989 GAGATAATTTCTATGATGATGGACTGACTAGTGAACAGGATACAGCATTTGAGGAATCAT 30162930 Query 712 TCTCTAACATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAGTG 759 | | || | ||||| || || || ||||||||||||||||||| Sbjct 30162929 TTACCAAAGTATACACAGCCAACAGCCTGCAGAAACAGTGGTACAGTG 30162882 Score = 89.7 bits (98), Expect = 9e-16 Identities = 81/98 (83%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 996 GATCTTGAAGTTTCCTT-AAAGAGTTCTAAAGCAAGATGGAAGATTGTTGTTGGTCACCA 1054 ||| ||||| | | || ||||||| | | ||||| |||||||||||||||||||||||| Sbjct 30162266 GATGTTGAATTGGCATTGAAAGAGT-CAACAGCAAAATGGAAGATTGTTGTTGGTCACCA 30162208 Query 1055 TGCAATGAGAAGCATTGGACATCATGGAGATACTAAAG 1092 ||| || | ||| ||||||||||||| |||| ||||| Sbjct 30162207 TGCCATCAAAAGTGTTGGACATCATGGTGATA-TAAAG 30162171 Score = 82.4 bits (90), Expect = 1e-13 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 601 AGATGGGAAAAATTGGAGAGAAGATTGA-CTTAGATTTCGTGGTGTCTACGGGAGATAAC 659 ||||||||| |||||| |||||| |||| | ||||||| || || ||||| ||||| ||| Sbjct 30160117 AGATGGGAAGAATTGGGGAGAAG-TTGAGCATAGATTTTGTAGTTTCTACTGGAGACAAC 30160059 Query 660 TTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATCTTTCTCTAAC 719 || || || ||||| | || | |||| || || || | || ||| | || Sbjct 30160058 TTTTATGAGGATGGACTTACCAGCATAGATGACCCTGCATTTGAGAAGTCATTCGCCAAG 30159999 Query 720 ATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACA 756 |||||||||||| || || ||||| || ||||||| Sbjct 30159998 ATCTACACTGCTAAGAGCCTGCAGAAGCAATGGTACA 30159962 Score = 57.2 bits (62), Expect = 5e-06 Identities = 43/51 (84%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 1133 TGTTGATCTCTACATGAATGGACATGATCATTGTCTTCAACATATGAGTGA 1183 ||||||| | ||||||||||| ||||| ||||| ||| | ||||| ||||| Sbjct 30161961 TGTTGATTTTTACATGAATGGGCATGACCATTGCCTTGAGCATATAAGTGA 30161911 Score = 50.0 bits (54), Expect = 8e-04 Identities = 78/112 (70%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 491 TGAGCTTCAGAGATTTATAGAGCCGGCTAAAAGCGACGGTTCCGTTAGTTTTATAGTCAT 550 |||||||||| | | | | |||| |||| |||||| || |||| ||| | || || Sbjct 30160480 TGAGCTTCAGCGGCTCGAACACCCGGTTAAAGCCGACGGCTCGCTTAGCTTTTTGGTGAT 30160421 Query 551 CGGAGATTGGGGTCGTCGTGGCTCCTTCAATCAGTCTCTCGTTGCTTATCAG 602 ||||| ||||| | | || | |||||| ||| |||||||||||| Sbjct 30160420 TGGAGACTGGGGAAGAAGGGGACATTACAATCAATCTGATGTTGCTTATCAG 30160369 Score = 48.2 bits (52), Expect = 0.003 Identities = 38/46 (83%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 256 CTCTTCTTCTCGTCACAAATTCCTTAtctctctctctctttctctc 301 || || ||||||||||||| | | ||||||||||||| |||||| Sbjct 5273082 CTATTTTTCTCGTCACAAAAACTCTCTCTCTCTCTCTCTCTCTCTC 5273127 Score = 42.8 bits (46), Expect = 0.12 Identities = 26/28 (93%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 74 aaagaaaaaaaaaaaCAAAGATGCGGCT 101 ||| ||||||||||| |||||||||||| Sbjct 34653451 AAAAAAAAAAAAAAAAAAAGATGCGGCT 34653478 Score = 41.0 bits (44), Expect = 0.41 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Minus Query 1 AACAAACCAAAACCTTTGAGAGATTCAAAACAAACaa 37 || |||||||||||| | ||||| ||||||| | ||| Sbjct 31046142 AATAAACCAAAACCTCTCAGAGAGTCAAAACTACCAA 31046106 Score = 39.2 bits (42), Expect = 1.4 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Plus Query 23 ATTCAAAACAAACaaaaaaaGA-AGAGGTGGAT 54 |||||||||||| ||| ||||| |||| ||||| Sbjct 4342729 ATTCAAAACAAATAAACAAAGAGAGAGATGGAT 4342761 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1544 CTTATTCCATCACAATAACATATATAA 1570 |||||||||||||||||| ||| |||| Sbjct 4937178 CTTATTCCATCACAATAA-ATAAATAA 4937203 Score = 37.4 bits (40), Expect = 5.0 Identities = 37/46 (80%), Gaps = 4/46 (9%) Strand=Plus/Plus Query 1528 TCATTTTTAGCA---ATAGCTTATTCCATCACAATAACATATATAA 1570 || ||||||||| | | ||| |||||||||||||| ||| |||| Sbjct 11599172 TCGTTTTTAGCAGCCACAACTTCTTCCATCACAATAA-ATAAATAA 11599216 Score = 37.4 bits (40), Expect = 5.0 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 446 TTTGCTGTTGTGTATCTTCACCACCTTCGTCGT 478 ||||||||||| |||||||||||| | | ||| Sbjct 18519636 TTTGCTGTTGTCAATCTTCACCACCCTAGCCGT 18519604 Score = 37.4 bits (40), Expect = 5.0 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 873 GTAGAGATGTTCTTTGTTGACACGACTCCTTTCGT 907 || ||| | ||||| | ||||||||||||||||| Sbjct 30159653 GTGGAGTTTTTCTTCATCGACACGACTCCTTTCGT 30159619 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 96.9 bits (106), Expect = 6e-18 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 588 CTCGTTGCTTATCAGATGGGAAAAATTGGAGAGAAGATTGACTTAGATTTCGTGGTGTCT 647 |||||| ||| |||||||||| |||||||||||| | ||| | |||| || || ||| Sbjct 16881251 CTCGTT-CTTG-CAGATGGGAAGGATTGGAGAGAAGTTAGACATCAATTTTGTTGTTTCT 16881194 Query 648 ACGGGAGATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAA 707 || |||||||| ||||||||||||||||||| ||||| || || | || | | Sbjct 16881193 ACAGGAGATAATTTCTACGACAATGGATTGTCTAGTGTGCAGGACACCGCATTTGTGGAG 16881134 Query 708 TCTTTCTCTAACATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAG 757 || || | || |||||||| || || || ||||| ||||||||| Sbjct 16881133 TCGTTTACCAAAATCTACACAGCCAAGAGCCTGCAGAAGTTGTGGTACAG 16881084 Score = 87.8 bits (96), Expect = 3e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1026 GCAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGCATTGGACATCATGGAGAT 1085 ||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||| ||| Sbjct 16880192 GCAAGGTGGAAAATTGTTGTTGGTCACCATGCCATTAGAAGTGTTGGACATCATGGTGAT 16880133 Query 1086 ACTAAAGAGCTCAACGAAGAGCTTCTTCCGATTCTT 1121 || || || || | | |||||| || |||||| Sbjct 16880132 ACAAAGGAACTTGAAAAGCGGCTTCTCCCAATTCTT 16880097 Score = 75.2 bits (82), Expect = 2e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 759 GTTTTGGGAAACCATGACTATAGAGGTGACGCAGAAGCTCAGCTGAGTTCTGTTCTCCGG 818 |||||||| |||||||| |||||||| | | ||| || ||| |||| || | ||| || Sbjct 16880973 GTTTTGGGCAACCATGATTATAGAGGCAATGTAGAGGCACAGTTGAGCCCTCTCCTCAGG 16880914 Query 819 GAAATCGACAGCCGTTGGATTTGTCTTCGATCATTT 854 |||| || ||| | ||||||||||| |||| ||| Sbjct 16880913 AAAATTGATAGCAGATGGATTTGTCTGAGATCTTTT 16880878 Score = 55.4 bits (60), Expect = 2e-05 Identities = 48/60 (80%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1133 TGTTGATCTCTACATGAATGGACATGATCATTGTCTTCAACATATGAGTGATGAAGACAG 1192 ||| ||| | ||||||||||||||||| ||||| ||| | ||||| || || | ||||| Sbjct 16880007 TGTGGATTTTTACATGAATGGACATGACCATTGCCTTGAGCATATAAGCGACAATGACAG 16879948 Score = 44.6 bits (48), Expect = 0.033 Identities = 30/34 (88%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 566 TCGTGGCTCCTTCAATCAGTCTCTCGTTGCTTAT 599 |||| |||||| | ||||||||||| |||||||| Sbjct 2741262 TCGTCGCTCCTACCATCAGTCTCTCTTTGCTTAT 2741295 Score = 41.0 bits (44), Expect = 0.41 Identities = 28/31 (90%), Gaps = 2/31 (6%) Strand=Plus/Minus Query 58 AGAATTTGAGATCCaaaaagaaaaaaaaaaa 88 ||||||||||| |||||| ||||||||||| Sbjct 12969010 AGAATTTGAGA--CAAAAAAAAAAAAAAAAA 12968982 Score = 39.2 bits (42), Expect = 1.4 Identities = 41/51 (80%), Gaps = 5/51 (10%) Strand=Plus/Minus Query 253 TTTCTCTTCTTCTCGTCACAAATTCCTTAt-ctctctct-ctctttctctc 301 || ||||||||||| |||| |||||||| ||| ||| ||| ||||||| Sbjct 3489332 TTCCTCTTCTTCTCCTCAC---TTCCTTATCCTCATTCTCCTCATTCTCTC 3489285 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1450 TAATTTTGTAACATACATTTAAGATTCTTA 1479 ||||||||||||| |||||| | || |||| Sbjct 3143414 TAATTTTGTAACAAACATTTGAAATACTTA 3143443 Score = 37.4 bits (40), Expect = 5.0 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 60 AATTTGAGATCCaaaaagaaaaaaaaaaaCAA 91 |||||||||||| | | |||||||||||| || Sbjct 6382942 AATTTGAGATCC-ATATGAAAAAAAAAAAAAA 6382972 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 71.6 bits (78), Expect = 2e-10 Identities = 69/88 (78%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 1026 GCAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGCATTGGACATCATGGAGAT 1085 ||||||||||||||||| || ||||| ||| |||| | |||| || |||||||| | Sbjct 12074064 GCAAGATGGAAGATTGTGGTGGGTCATCATACAATCAAAAGCGCCGGGCATCATGGTGTA 12074123 Query 1086 ACTAAAGAGCTCAACGAAGAGCTTCTTC 1113 || |||||||| ||||||| ||||| Sbjct 12074124 ACCAAAGAGCT---TGAAGAGCATCTTC 12074148 Score = 64.4 bits (70), Expect = 4e-08 Identities = 114/165 (69%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 596 TTATC-AGATGGGAAAAATTGGAGAGAAGATTGACTTAGATTTCGTGGTGTCTACGGGAG 654 ||||| ||||||||| ||||||| ||| | ||| | ||||| ||| | || || || | Sbjct 12048598 TTATCCAGATGGGAATCGTTGGAGAAAAGTTGGACGTGGATTTTGTGATCTCCACCGGTG 12048657 Query 655 ATAACTTCTACGACAATGGATTGTTTAGTGAACATGATCCAAACTTCGAACAATCTTTCT 714 ||||||||||||| || ||| | | ||||||| || || | || ||| Sbjct 12048658 ATAACTTCTACGATGCCGGTTTGACAGGCGTCGATGATCCGGCATTTGACGAGTCGTTCA 12048717 Query 715 CTAACATCTACACTGCTCCAAGTCTTCAGAAACAGTGGTACAGTG 759 | | |||||||| || || || | || || || ||||||| || Sbjct 12048718 CAGATATCTACACAGCGCCTAGCTTGCAAAAGCAATGGTACAATG 12048762 Score = 59.0 bits (64), Expect = 2e-06 Identities = 132/195 (68%), Gaps = 14/195 (7%) Strand=Plus/Plus Query 1200 CAGTTTCTAACTAGTGGTGCTGGATCCAAGGCTTGGAGAGGAGATATTAACCCAGTGACC 1259 || |||||||| ||||| | || || ||||| |||||||| || |||| |||| Sbjct 12074795 CAATTTCTAACCAGTGGAGGGGGTTCAAAGGCATGGAGAGGTGACATTAGGA-AGTGG-- 12074851 Query 1260 ATCAATCCCAAGCTACTGAAATTCTATTATGATGGTCAAGGATTCATGT--CTGC--TCG 1315 ||||| || | |||| | ||||||||||| || || || |||| |||| || Sbjct 12074852 ---AATCCAGAGGAATTGAAGCTATATTATGATGGACAGGGTTTTATGTCACTGCAAACG 12074908 Query 1316 GTTCACTCACTCGGACGCAGAGATCGTCTTCTACGATGTCTTTGGTGAGATTTTGCACAA 1375 |||| | | || || || || || || |||||||| || | || ||||||| Sbjct 12074909 ----ACTCCAACCAATGCGGATATTGTGTTTTATGATGTCTTCGGCAATGTTCTGCACAA 12074964 Query 1376 ATGGGTCACTTCTAA 1390 |||| || ||| || Sbjct 12074965 ATGGAGCATTTCCAA 12074979 Score = 51.8 bits (56), Expect = 2e-04 Identities = 40/48 (83%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 759 GTTTTGGGAAACCATGACTATAGAGGTGACGCAGAAGCTCAGCTGAGT 806 |||||||| || |||||||||||||||||||| || || |||||| Sbjct 12048894 GTTTTGGGTAATCATGACTATAGAGGTGACGCTTTGGCACAACTGAGT 12048941 Score = 42.8 bits (46), Expect = 0.12 Identities = 43/55 (78%), Gaps = 1/55 (2%) Strand=Plus/Plus Query 1027 CAAGATGGAAGATTGTTGTTGGTCACCATGCAATGAGAAGCATTGGACATCATGG 1081 |||| |||||||| || |||||||||||| | || | ||| |||| | ||||| Sbjct 12049928 CAAG-TGGAAGATCGTGGTTGGTCACCATACTATCAAAAGTGCTGGAAACCATGG 12049981 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1429 TAATAAATTTGGCTTCCTTTGTAATTTTGT 1458 ||| |||||||| ||| | ||||||||||| Sbjct 2272208 TAAGAAATTTGGGTTCTTGTGTAATTTTGT 2272237 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 16354128 TCATCCGTTTCCTCCAC-ATTCACGTTTCTCATC 16354160 Score = 37.4 bits (40), Expect = 5.0 Identities = 29/34 (85%), Gaps = 3/34 (9%) Strand=Plus/Minus Query 60 AATTTGAGAT---CCaaaaagaaaaaaaaaaaCA 90 |||||||||| | |||||| |||||||||||| Sbjct 20887439 AATTTGAGATCAACAAAAAAGTAAAAAAAAAACA 20887406 Score = 37.4 bits (40), Expect = 5.0 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 313 GAGAAATATACAAAACCTCC 332 |||||||||||||||||||| Sbjct 22464134 GAGAAATATACAAAACCTCC 22464153 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 51.8 bits (56), Expect = 2e-04 Identities = 34/38 (89%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 265 TCGTCACAAATTCCTTAtctctctctctctttctctct 302 ||||||||||||| | ||||||||||||| ||||||| Sbjct 15286592 TCGTCACAAATTCTTCCTCTCTCTCTCTCTCTCTCTCT 15286555 Score = 46.4 bits (50), Expect = 0.010 Identities = 33/38 (87%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 263 TCTCGTCACAAATTCCTTAtctctctctctctttctct 300 ||||||||||| ||| | ||||||||||||| ||||| Sbjct 6103932 TCTCGTCACAATTTCTCTCTCTCTCTCTCTCTCTCTCT 6103969 Score = 42.8 bits (46), Expect = 0.12 Identities = 38/48 (79%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 110 GAATATCCTTCAGCATCTTTAACCGCACCtttttttctttttttcttt 157 ||||||||||| | ||||| | | |||||||| ||||||||||| Sbjct 11760739 GAATATCCTTCGTCCTCTTTTATTTCTTCTTTTTTTTTTTTTTTCTTT 11760786 Score = 41.0 bits (44), Expect = 0.41 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 308 AAAGAGAGAAATATACAAAACCTCC 332 || |||||||||||||||||||||| Sbjct 3136914 AATGAGAGAAATATACAAAACCTCC 3136890 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 214 CTCCTTCTTTCATCATCATCGTTTCCTTC 242 || ||||||||||||||||| ||| |||| Sbjct 13646089 CTTCTTCTTTCATCATCATCCTTTGCTTC 13646117 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 16434341 TCATCCGTTTCCTCCAC-ATTCACGTTTCTCATC 16434373 Score = 37.4 bits (40), Expect = 5.0 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 695 AAACTTC-GAACAATCTTTCTCTAACATCT 723 |||||| ||||||||||||||||| |||| Sbjct 17065334 AAACTTAAGAACAATCTTTCTCTAAAATCT 17065363 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 17760696 TCATCCGTTTCCTCCAC-ATTCACGTTTCTCATC 17760728 Score = 37.4 bits (40), Expect = 5.0 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 365 AAAAAATTGTGTGAGGCTTATTTGATCAATAATTATGAAT 404 ||||||||||| | |||||| | || |||||||| ||| Sbjct 29561197 AAAAAATTGTGCGTTGCTTATATAATTTATAATTATAAAT 29561236 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 48.2 bits (52), Expect = 0.003 Identities = 32/36 (89%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 27 AAAACAAACaaaaaaaGAAGAGGTGGATGTCAGAAT 62 |||| ||| ||||||| |||| |||||||||||||| Sbjct 9718656 AAAAAAAAAAAAAAAAAAAGATGTGGATGTCAGAAT 9718621 Score = 37.4 bits (40), Expect = 5.0 Identities = 42/55 (76%), Gaps = 6/55 (11%) Strand=Plus/Minus Query 1420 AAAAAGCCTTAATAAATTTGGCTT---CCTTTG---TAATTTTGTAACATACATT 1468 ||| || |||||| | |||||| |||||| ||||||||||| ||||||| Sbjct 12543093 AAATAGACTTAATTCAATTGGCTAGGACCTTTGCTATAATTTTGTAAAATACATT 12543039 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 22022761 TCATCTGTTTCCTCCAC-ATTCACGTTTCTCATC 22022729 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 41.0 bits (44), Expect = 0.41 Identities = 34/39 (87%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 253 TTTCTCTTCTTCTCGTCACAAATTCCTTAtctctctctc 291 ||||||||||| |||| |||||||| | |||||||||| Sbjct 9270048 TTTCTCTTCTTTTCGT-GCAAATTCCCT-TCTCTCTCTC 9270012 Score = 41.0 bits (44), Expect = 0.41 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 24 TTCAAAACAAACaaaaaaaGAAGAG 48 ||||||||||||||||||| ||||| Sbjct 19119762 TTCAAAACAAACAAAAAAACAAGAG 19119738 Score = 39.2 bits (42), Expect = 1.4 Identities = 72/97 (74%), Gaps = 14/97 (14%) Strand=Plus/Plus Query 203 TCATCGTCTCCCTCCT-TCTTTCATCATCATCGTTTCCTTCACCATTCACGTTTCTCTTC 261 |||| ||||||||||| |||||| ||||| ||| |||| | |||| | || |||| Sbjct 3629100 TCATTGTCTCCCTCCTCTCTTTC-TCATCGTCG--TCCT--CCTATTCTC-TTCCTCTCT 3629153 Query 262 TTCTCGTCACAAATTCCTTAtctctc-tctctctttc 297 ||||| ||| |||| ||| ||| ||||| |||| Sbjct 3629154 TTCTCCTCA-----TCCTCATC-CTCATCTCTTTTTC 3629184 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 15 TTTGAGAGATTCAAAACAAACaaaa 39 |||||||||||||||||| || ||| Sbjct 12909126 TTTGAGAGATTCAAAACAGACCAAA 12909150 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 15081804 TCATCTGTTTCCTCCAC-ATTCACGTTTCTCATC 15081772 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1577 ATCTTTTCCTCAAATTTTTGATACAAGT 1604 ||| |||||||||||||||| |||||| Sbjct 20211904 ATCATTTCCTCAAATTTTTGGGACAAGT 20211931 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 997 ATCTTGAAGTTTCCTTAAAGAGTTCTAA 1024 |||||||||||||||| | |||||||| Sbjct 21969200 ATCTTGAAGTTTCCTTCATCAGTTCTAA 21969173 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 41.0 bits (44), Expect = 0.41 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 123 CATCTTTAACCGCACCtttttttctttttttc 154 ||||||||||| || ||||||| |||||||| Sbjct 7023566 CATCTTTAACCAAACTTTTTTTTTTTTTTTTC 7023597 Score = 37.4 bits (40), Expect = 5.0 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 1034 GAAGATTGTTGTTGGTCACCATGCAATGAGAAGCA 1068 |||||| | |||| ||||||||||||| | || || Sbjct 19520176 GAAGATGGATGTTAGTCACCATGCAATCACAAACA 19520142 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 41.0 bits (44), Expect = 0.41 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 286 tctctctctttctctctTATATAAAGAGAGAAATA 320 ||| | ||||| ||| ||||||||||||||| ||| Sbjct 27003850 TCTTTTTCTTTTTCTTTTATATAAAGAGAGAGATA 27003884 Score = 41.0 bits (44), Expect = 0.41 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 286 tctctctctttctctctTATATAAAGAGAGAAATA 320 ||| | ||||| ||| ||||||||||||||| ||| Sbjct 28190917 TCTTTTTCTTTTTCTTTTATATAAAGAGAGAGATA 28190951 Score = 39.2 bits (42), Expect = 1.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 60 AATTTGAGATCCaaaaagaaaaaaaaaaa 88 ||||||||||||| | | ||||||||||| Sbjct 34522970 AATTTGAGATCCACATAAAAAAAAAAAAA 34522998 Score = 37.4 bits (40), Expect = 5.0 Identities = 38/47 (81%), Gaps = 2/47 (4%) Strand=Plus/Plus Query 203 TCATCGTCTCCCTCCTTCTTTCATCATCATCGTTTCCTTCACCATTC 249 || |||||| | || ||| | | ||||| |||| ||||||||||||| Sbjct 1911220 TCTTCGTCTTCGTC-TTCGT-CTTCATCTTCGTATCCTTCACCATTC 1911264 Score = 37.4 bits (40), Expect = 5.0 Identities = 47/61 (77%), Gaps = 4/61 (7%) Strand=Plus/Minus Query 2 ACAAACCAAAACCTTTGAGAGATTCAAAACAAACaaaaaaaGAAGAGG--TGGATGTCAG 59 ||||||||||||||| | |||| |||| ||| |||| || || || ||||| |||| Sbjct 7651769 ACAAACCAAAACCTTAG-GAGAAGAAAAAGAAAAGAAAATAGGAGTGGTTTGGAT-TCAG 7651712 Query 60 A 60 | Sbjct 7651711 A 7651711 Score = 37.4 bits (40), Expect = 5.0 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 111 AATATCCTTCAGCATCTTTAACCGCACCtttttttctt 148 |||||||||||| ||| ||||| || ||||||||| Sbjct 10340519 AATATCCTTCAGTCTCTCATACCGCTCCATTTTTTCTT 10340556 Score = 37.4 bits (40), Expect = 5.0 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 313 GAGAAATATACAAAACCTCC 332 |||||||||||||||||||| Sbjct 26343565 GAGAAATATACAAAACCTCC 26343584 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 293 ctttctctctTATATAAAGAGAGAAATA 320 |||| ||| ||||||||||||||| ||| Sbjct 27724991 CTTTTTCTTTTATATAAAGAGAGAGATA 27725018 Score = 37.4 bits (40), Expect = 5.0 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 286 tctctctctttctctctTATATAAAGAGAGAAATA 320 ||| | ||||| || ||||||||||||||| ||| Sbjct 28428416 TCTTTTTCTTTTTCAATTATATAAAGAGAGAGATA 28428450 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 41.0 bits (44), Expect = 0.41 Identities = 37/44 (84%), Gaps = 2/44 (5%) Strand=Plus/Plus Query 1559 TAACATATATAATGTACGATCTTTTCCTCAAATTTTTGATACAA 1602 ||||| ||| || |||||||||||| || ||||||| |||||| Sbjct 8771913 TAACA-ATACAA-GTACGATCTTTTTCTATAATTTTTTATACAA 8771954 Score = 37.4 bits (40), Expect = 5.0 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 15 TTTGAGAGATTCAAAACAAACaaaaaaaGA 44 ||||||||||| |||| ||| ||||||||| Sbjct 5126879 TTTGAGAGATT-AAAAAAAAAAAAAAAAGA 5126851 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 24 TTCAAAACAAACaaaaaaaGAAGAG 48 ||||||||||| |||||||| |||| Sbjct 9554408 TTCAAAACAAAAAAAAAAAGGAGAG 9554384 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 988 TTCTCCGTGATCTTGAAGTTTCCTTAAA 1015 |||||| || || ||||||||||||||| Sbjct 30039621 TTCTCCTTGGTCCTGAAGTTTCCTTAAA 30039648 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 41.0 bits (44), Expect = 0.41 Identities = 27/29 (93%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 60 AATTTGAGATCCaaaaagaaaaaaaaaaa 88 |||||||||| ||||| |||||||||||| Sbjct 48368376 AATTTGAGAT-CAAAATGAAAAAAAAAAA 48368349 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1565 ATATAATGTACGATCTTTTCCTCAAA 1590 |||||| || |||||||||||||||| Sbjct 19111757 ATATAAAGTTCGATCTTTTCCTCAAA 19111782 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1565 ATATAATGTACGATCTTTTCCTCAAA 1590 |||||| || |||||||||||||||| Sbjct 19238225 ATATAAAGTTCGATCTTTTCCTCAAA 19238250 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1581 TTTCCTCAAATTTTTGATACAAGTGT 1606 |||| ||||||||||||||||| ||| Sbjct 19632314 TTTCATCAAATTTTTGATACAATTGT 19632339 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 365 AAAAAATTGTGTGAGGCTTATTT 387 |||||||||||||| |||||||| Sbjct 1738555 AAAAAATTGTGTGATGCTTATTT 1738577 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 1.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1006 TTTCCTTAAAGAGTTCTAAAGCAAGA 1031 |||| ||||||||| ||||||||||| Sbjct 20704110 TTTCTTTAAAGAGTGCTAAAGCAAGA 20704085 Score = 37.4 bits (40), Expect = 5.0 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 235 TTTCCTTCACCATTCACGTTTCTCTTC 261 |||||| ||| |||||||||||||||| Sbjct 8994618 TTTCCTCCAC-ATTCACGTTTCTCTTC 8994593 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 39.2 bits (42), Expect = 1.4 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 1037 GATTGTTGTTGGTCACCATGCAATGAGAAGCAT 1069 |||| ||||| |||||||||||||| ||| ||| Sbjct 3830880 GATTATTGTTCGTCACCATGCAATG-GAACCAT 3830849 Score = 37.4 bits (40), Expect = 5.0 Identities = 34/41 (83%), Gaps = 3/41 (7%) Strand=Plus/Plus Query 662 CTACGACAATGGATTGTTTAGTGAACATGA-TCCAAACTTC 701 ||| |||||| ||| |||||||||||| | ||||| |||| Sbjct 348146 CTAAGACAAT--ATTTTTTAGTGAACATTATTCCAATCTTC 348184 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.4 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1 AACAAACCAAAACCTTTGAGAGATTCAAAAC 31 || ||| ||||||||||||| ||||||||| Sbjct 21267367 AAGAAATGAAAACCTTTGAGACATTCAAAAC 21267397 Score = 37.4 bits (40), Expect = 5.0 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 72 aaaaagaaaaaaaaaaaC--AAAGATGCGGCTAC 103 ||||| ||| ||||||| |||||||||||||| Sbjct 26554754 AAAAATAAATAAAAAAAATAAAAGATGCGGCTAC 26554721 Score = 37.4 bits (40), Expect = 5.0 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 58 AGAATTTGAGAT-CCaaaaagaaaaaaaaa 86 |||||||||||| || |||| ||||||||| Sbjct 26938961 AGAATTTGAGATACCGAAAAAAAAAAAAAA 26938990 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/36 (83%), Gaps = 3/36 (8%) Strand=Plus/Plus Query 55 GTCAGAATTTGAGATCCaaaaagaaaaaaaaaaaCA 90 ||||||||||| | ||||| ||||||||||||| Sbjct 29808724 GTCAGAATTTGCAA---AAAAAAAAAAAAAAAAACA 29808756 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 39.2 bits (42), Expect = 1.4 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 58 AGAATTTGAGATCCaaaaagaaaaaaaaaaa 88 ||||||||||| ||||| ||||||||||| Sbjct 20970164 AGAATTTGAGACTTAAAAAAAAAAAAAAAAA 20970194 Score = 39.2 bits (42), Expect = 1.4 Identities = 35/43 (81%), Gaps = 2/43 (5%) Strand=Plus/Plus Query 205 ATCGTCTCCCTCC--TTCTTTCATCATCATCGTTTCCTTCACC 245 ||||||| ||||| ||||||| | ||| | ||||||||||| Sbjct 29541118 ATCGTCTTCCTCCAGTTCTTTCGCCTTCAGCTTTTCCTTCACC 29541160 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Plus Query 1156 ATGATCATTGTCTTCAACATA--TGAGTG 1182 ||||||||||| ||||||||| |||||| Sbjct 977786 ATGATCATTGTGTTCAACATATTTGAGTG 977814 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 25 TCAAAACAAACaaaaaaaGAAGA 47 ||||||||||||| ||||||||| Sbjct 4201570 TCAAAACAAACAATAAAAGAAGA 4201592 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 7379097 TCATCCGTTTCCTCCAC-ATTCACGTTTCTCATC 7379065 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 10950424 TCATCCGTTTCCTCCAC-ATTCACGTTTCTCATC 10950392 Score = 37.4 bits (40), Expect = 5.0 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 61 ATTTGAGATCCaaaaagaaaaaaaa 85 ||||||||||||||||||| || || Sbjct 12271413 ATTTGAGATCCAAAAAGAAGAATAA 12271437 >Query1 on lcl|JrScfU0023| Query1 on lcl|JrScfU0023 Length=41966 Score = 37.4 bits (40), Expect = 5.0 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 313 GAGAAATATACAAAACCTCC 332 |||||||||||||||||||| Sbjct 29912 GAGAAATATACAAAACCTCC 29893 >Query1 on lcl|JrScfU0004| Query1 on lcl|JrScfU0004 Length=89337 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 300 tctTATATAAAGAGAGAAATATA 322 || |||||||||||||||||||| Sbjct 33001 TCATATATAAAGAGAGAAATATA 32979 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/35 (86%), Gaps = 1/35 (3%) Strand=Plus/Plus Query 217 CTTCTTTCATCATCATCGTTTCCTTCACCATTCAC 251 |||||| |||||||||||| | ||||| |||| || Sbjct 5909973 CTTCTT-CATCATCATCGTCTTCTTCATCATTTAC 5910006 Score = 37.4 bits (40), Expect = 5.0 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 229 TCATC-GTTTCCTTCACCATTCACGTTTCTCTTC 261 ||||| ||||||| ||| ||||||||||||| || Sbjct 15323091 TCATCCGTTTCCTCCAC-ATTCACGTTTCTCATC 15323059 Score = 37.4 bits (40), Expect = 5.0 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 313 GAGAAATATACAAAACCTCC 332 |||||||||||||||||||| Sbjct 26256040 GAGAAATATACAAAACCTCC 26256021 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 37.4 bits (40), Expect = 5.0 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1546 TATTCCATCACAATAACATATAT 1568 |||||||||| |||||||||||| Sbjct 4688795 TATTCCATCATAATAACATATAT 4688773 Score = 37.4 bits (40), Expect = 5.0 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 313 GAGAAATATACAAAACCTCC 332 |||||||||||||||||||| Sbjct 8451276 GAGAAATATACAAAACCTCC 8451295 Score = 37.4 bits (40), Expect = 5.0 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 736 GTCTTCAGAAACAGTGGTACAGTGTTTTGG 765 ||||||||||||||| |||| || ||||| Sbjct 34131763 GTCTTCAGAAACAGTTGTACTCTGCTTTGG 34131792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 869372758218 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2