BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1875 Score E Sequences producing significant alignments: (Bits) Value lcl|JrScfU0001 264 2e-68 lcl|Jr1D 192 1e-46 lcl|Jr2S 167 5e-39 lcl|Jr2D 42.8 0.13 lcl|Jr7S 41.0 0.46 lcl|Jr8D 39.2 1.6 lcl|Jr6D 37.4 5.6 lcl|Jr5S 37.4 5.6 lcl|Jr5D 37.4 5.6 lcl|Jr4D 37.4 5.6 lcl|Jr3S 37.4 5.6 lcl|Jr1S 37.4 5.6 >Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 Length=1158772 Score = 264 bits (292), Expect = 2e-68 Identities = 262/339 (77%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 666 CAGGGCTGAAACCAAGTACTATCTATTACTATCGATGTGGAGATCCTTCAAGACGGGCTA 725 ||||| |||||||||| || | || || ||||||||||||||||| || || || | Sbjct 668367 CAGGGTTGAAACCAAGCACACTATACTATTATCGATGTGGAGATCCATCTCTACCAGCCA 668426 Query 726 TGAGTAAGATACACCATTTCAGGACAATGCCTGTTTCTAGTCCCTCGAGTTATCCTGGTC 785 ||||||| || || |||||||| ||||| |||||| ||| |||||||| | Sbjct 668427 TGAGTAAAATCTACTCCTTCAGGACCATGCCAGTTTCTCATCCGAGCAGTTATCCAGACA 668486 Query 786 GAATAGCGGTTGTTGGTGATCTTGGTCTCACTTATAACACTACTGATACAATTAGTCACT 845 |||||| |||||||| ||||||||||| || ||||| || ||| || || ||||||| Sbjct 668487 AAATAGCAGTTGTTGGAGATCTTGGTCTTACATATAATACAACTACCACCATCAGTCACT 668546 Query 846 TGATTCATAACTCTCCGGATCTCATTTTATTGATCGGCGACGTGAGTTATGCAAACTTGT 905 ||||| ||| || ||||| || ||||| | || || || | ||||||||| | | Sbjct 668547 TGATTAGTAATAAACCTGATCTTGTTCTATTGGTTGGTGATGTTACTTATGCAAATCTAT 668606 Query 906 ATCTAACAAACGGGACTAGCTCTGATTGTTATTCTTGCTCTTTCCCTGAGACACCTATAC 965 |||| ||||| |||||| |||||||||||||||||||||| || || | || || |||| Sbjct 668607 ATCTCACAAATGGGACTGGCTCTGATTGTTATTCTTGCTCATTTCCACAAACTCCCATAC 668666 Query 966 ATGAGACGTATCAGCCACGTTGGGACTACTGGGGTAGGT 1004 ||||||| |||||||| |||||||| |||||||| |||| Sbjct 668667 ATGAGACATATCAGCCTCGTTGGGATTACTGGGGAAGGT 668705 Score = 172 bits (190), Expect = 1e-40 Identities = 211/288 (73%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 1409 CATGTGCATGCTTATGAACGGTCGAACAGAGTATACAATTACGAACTGGACCCATGTGGT 1468 || || |||||||| || |||| || |||| || || ||| | || ||||||||| Sbjct 670653 CAGGTACATGCTTACGAGAGGTCAAATCGAGTGTATAACTACACCTTAGATCCATGTGGT 670712 Query 1469 CCAGTTTACATTGTGATTGGTGATGGAGGTAACCGTGAAAAGATGGCGATCGAGCATGCA 1528 || || || || |||| ||||| ||||| || ||||||||||| || | ||||| Sbjct 670713 CCGGTATATATCACAGTTGGAGATGGGGGTAATCGAGAAAAGATGGCAATTAAACATGCT 670772 Query 1529 GATGACCCCGGTAAATGTCCAGAGCCGTTAACCACGCCCGATCCAGTCATGGGTGGGTTT 1588 ||||| || || || |||||||| ||||| || || || || | | ||| ||||| ||| Sbjct 670773 GATGATCCTGGCAACTGTCCAGACCCGTTGACTACTCCAGACCAATACATTGGTGGCTTT 670832 Query 1589 TGCGCGTGGAACTTCAC-----GC----CGTCTGATAAGTTCTGTTGGGATCGGCAACCT 1639 || || || || || || | ||| |||||||||||||| || |||||| Sbjct 670833 TGTGCTACAAATTTTACATCTGGCCCAGCAGCTGGCAAGTTCTGTTGGGACCGCCAACCT 670892 Query 1640 GATTATAGTGCCCTGAGAGAAAGCAGCTTTGGCCATGGAATCCTAGAG 1687 || || || ||| |||||||||| |||||||||||||| ||||||||| Sbjct 670893 GAATACAGCGCCTTGAGAGAAAGTAGCTTTGGCCATGGTATCCTAGAG 670940 Score = 165 bits (182), Expect = 2e-38 Identities = 154/196 (79%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1218 CAGCGGAACAATATGAATGGTTAAAGAAGGATTTGGCTAAAGTCGATAGATCGGTAACTC 1277 ||||||| || || | ||| || ||| ||| ||||||| || || ||||| |||||| Sbjct 669349 CAGCGGATCAGTACAAGTGGCTAGAGAGGGACTTGGCTAGCGTTGACAGATCAATAACTC 669408 Query 1278 CATGGTTAGTAGCTTCTTGGCATCCACCTTGGTATAGTTCTTATACAGCGCATTACAGAG 1337 ||||| | |||||| ||||||| ||||||||||| ||||| ||| ||| ||||| |||| Sbjct 669409 CATGGCTGGTAGCTGCTTGGCACCCACCTTGGTACAGTTCCTATCAAGCTCATTATAGAG 669468 Query 1338 AAGCAGAATGTATGAAAGAAGCTATGGAGGAATTACTTTATTCTTATGGTACCGACATTG 1397 | | ||| ||||||| | || ||||| || |||||||| ||||||||| ||||| | Sbjct 669469 AGGTAGAGTGTATGAGGGTGGCAATGGAAGAGTTACTTTACTCTTATGGTGTTGACATAG 669528 Query 1398 TCTTTAACGGACATGT 1413 |||| || |||||||| Sbjct 669529 TCTTCAATGGACATGT 669544 Score = 147 bits (162), Expect = 4e-33 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 1001 AGGTTTATGGAGAATCTGACTTCCAAAGTTCCTTTGATGGTGATTGAAGGGAACCATGAG 1060 ||||| ||| ||||| | ||| |||||||| | |||||| |||||||||||||||| Sbjct 668820 AGGTTCATGCAGAATTTAGTTTCTAAAGTTCCAATAATGGTGGTTGAAGGGAACCATGAA 668879 Query 1061 ATCGAATTGCAAGCAGAGAACAAGACATTTGAAGCTTATAGTTCAAGATTCGCTTTCCCT 1120 || ||| ||||| | | | |||||||| ||||||||||| | || || ||||| Sbjct 668880 ATAGAAGCACAAGCTGGAAGCCAGACATTTTCTGCTTATAGTTCTCGGTTTGCATTCCCA 668939 Query 1121 TTTAATGAAAGCGGCTCGTCTTCTACGCTATATTATTCCTTTAACGCTGGTGGGATTCAC 1180 | | | ||||| || || || || || | ||||| |||||||| | |||||||| || Sbjct 668940 TCTGAAGAAAGTGGGTCTTCATCCACATTCTATTACTCCTTTAATGTAGGTGGGATACAT 668999 Query 1181 TTTGTTATGCTTGGTGCCTACATTGCGTA 1209 ||||| |||||||| ||||| ||||| || Sbjct 669000 TTTGTAATGCTTGGGGCCTATATTGCATA 669028 Score = 138 bits (152), Expect = 2e-30 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 474 CAGGTGAGTTCCAAATCGGAAAGAAGGTGAAGCCATTAGATCCGACAAGTATCAACAGTG 533 ||||||| | |||||||| | || || ||||| ||||| || | || || |||| Sbjct 666226 CAGGTGAATCACAAATCGGTTACAACGTAAAGCCGTTAGACCCTAAAACCGTCTTGAGTG 666285 Query 534 TTGTTCAATTCGGAACCTTGAGGCACTCACTGAGTCATGAAGCTAAAGGACATTCACTTG 593 |||||| | |||| ||| || | |||||| |||||||| | |||| |||| || | Sbjct 666286 TTGTTCGTTATGGAAACTTAAGATATCCACTGATGCATGAAGCCACAGGATATTCTCTGG 666345 Query 594 TTTATAGTCAACTTTATCCTTTCGACGGTCTCCTTAACTACACTTCTGGAATCATACACC 653 |||| ||||| ||||||||||| || ||||||| || ||||| ||||||||||| || | Sbjct 666346 TTTACAGTCAGCTTTATCCTTTTGAAGGTCTCCAAAATTACACCTCTGGAATCATCCATC 666405 Query 654 ATGTTCGCATTACAGG 669 ||||||| | ||||| Sbjct 666406 ATGTTCGTCTCACAGG 666421 Score = 113 bits (124), Expect = 9e-23 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 287 ATTCCGTCAACTTTAGATGGACCGTTCGTTCCGGTGACGGTGCCATTGGACACCTCTCTC 346 |||| ||| ||| | || || ||||||| || ||||||||||| || || | ||| Sbjct 664475 ATTCTGTCGACTCTGGACGGCCCGTTCGAGCCCGTGACGGTGCCGTTCGATGCTAATCTG 664534 Query 347 CGGGGGCAAGCCATCGATTTGCCCGACACCGATCCCCGCGTCCGCCGGCGTGTCATTGGT 406 || || | || | |||||||| || | |||||| | || | || || |||| || Sbjct 664535 CGTGGCAATGCGGTTGATTTGCCGGAATCGGATCCCAGGGTTCAGCGCCGCGTCAAGGGG 664594 Query 407 TTTGAGCCGGAGCAAAtctctctctccctctcctcCGATCATGATTCCATCTGGGTCTCT 466 || ||||| ||||| || || |||||||||||||| | | || ||| ||||| |||| Sbjct 664595 TTCGAGCCCGAGCAGATTTCGGTCTCCCTCTCCTCCCACTACGACTCCGTCTGGATCTCC 664654 Query 467 TGGATCACAGGT 478 |||||||||||| Sbjct 664655 TGGATCACAGGT 664666 Score = 77.0 bits (84), Expect = 6e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1686 AGATGAAGAACGAGACATGGGCACTATGGACATGGTATAGGAATCAAGACTCGAGCAGTG 1745 || ||||||| || || ||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 671408 AGGTGAAGAATGAAACTTGGGCCTTATGGACATGGTACCGAAATCAGGACTCTTACAGTG 671467 Query 1746 AAGTCGGAGATCAGATTTATATTGTGAGACAACCT 1780 |||| || ||||| || || || || || |||||| Sbjct 671468 AAGTTGGGGATCAAATCTACATAGTAAGGCAACCT 671502 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 192 bits (212), Expect = 1e-46 Identities = 246/339 (73%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 666 CAGGGCTGAAACCAAGTACTATCTATTACTATCGATGTGGAGATCCTTCAAGACGGGCTA 725 ||||| ||||||| | | | ||| | |||| || ||||||||||| | || || | Sbjct 20778230 CAGGGTTGAAACCCAACGCATTATATCAGTATCAGTGCGGAGATCCTTCTATACCAGCAA 20778171 Query 726 TGAGTAAGATACACCATTTCAGGACAATGCCTGTTTCTAGTCCCTCGAGTTATCCTGGTC 785 ||||| | || || |||||||||| ||||| |||||| | ||| |||||| || | Sbjct 20778170 TGAGTGAAGTATACTATTTCAGGACTATGCCAGTTTCTGGACCCAAGAGTTACCCCAGCA 20778111 Query 786 GAATAGCGGTTGTTGGTGATCTTGGTCTCACTTATAACACTACTGATACAATTAGTCACT 845 ||||||| || || || || |||||||| || || || || || || | || ||| Sbjct 20778110 GAATAGCAGTGGTGGGGGACCTTGGTCTTACATACAATACCACATCCACGGTCAGCCACC 20778051 Query 846 TGATTCATAACTCTCCGGATCTCATTTTATTGATCGGCGACGTGAGTTATGCAAACTTGT 905 |||| |||| || ||||| || || || | || || || |||||||| ||| ||| Sbjct 20778050 TGATGAGTAACCACCCTGATCTTGTTCTACTGGTGGGGGATGTTAGTTATGCTAACATGT 20777991 Query 906 ATCTAACAAACGGGACTAGCTCTGATTGTTATTCTTGCTCTTTCCCTGAGACACCTATAC 965 |||| ||||| || ||| | ||||||| || ||||| || || | | || || || | Sbjct 20777990 ATCTCACAAATGGAACTGGGACTGATTGCTACTCTTGTTCCTTTTCGCAAACTCCCATTC 20777931 Query 966 ATGAGACGTATCAGCCACGTTGGGACTACTGGGGTAGGT 1004 |||| || ||||||||||||||||| |||||||| |||| Sbjct 20777930 ATGAAACTTATCAGCCACGTTGGGATTACTGGGGAAGGT 20777892 Score = 167 bits (184), Expect = 5e-39 Identities = 210/288 (73%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 1409 CATGTGCATGCTTATGAACGGTCGAACAGAGTATACAATTACGAACTGGACCCATGTGGT 1468 || || ||||| ||||| || | || |||| || || ||| | || || ||||||||| Sbjct 20775805 CAGGTTCATGCCTATGAGAGGACAAATCGAGTGTATAACTACAATCTAGATCCATGTGGT 20775746 Query 1469 CCAGTTTACATTGTGATTGGTGATGGAGGTAACCGTGAAAAGATGGCGATCGAGCATGCA 1528 | ||||| ||| |||||||||| ||||| || || |||||||| || | ||||| Sbjct 20775745 GCCGTTTATATTACTGTTGGTGATGGGGGTAATCGGGAGAAGATGGCAATTGTACATGCT 20775686 Query 1529 GATGACCCCGGTAAATGTCCAGAGCCGTTAACCACGCCCGATCCAGTCATGGGTGGGTTT 1588 ||||| | | || || ||||| || | || || || ||| | |||||||| || Sbjct 20775685 GATGAAGCTAGCAACTGCCCAGAACCATCTACGACACCGGATGAATATATGGGTGGATTC 20775626 Query 1589 TGCGCGTGGAACTTCAC-----GCCGT----CTGATAAGTTCTGTTGGGATCGGCAACCT 1639 || |||| || ||||| ||| | ||| ||||||||||||||| | ||| ||| Sbjct 20775625 TGTGCGTTCAATTTCACATCAGGCCCTGCAGCTGGTAAGTTCTGTTGGGACCAGCAGCCT 20775566 Query 1640 GATTATAGTGCCCTGAGAGAAAGCAGCTTTGGCCATGGAATCCTAGAG 1687 ||||||||||| |||||||| |||||||||||||| || |||||| Sbjct 20775565 GATTATAGTGCGTACAGAGAAAGTAGCTTTGGCCATGGGATTCTAGAG 20775518 Score = 138 bits (152), Expect = 2e-30 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 1001 AGGTTTATGGAGAATCTGACTTCCAAAGTTCCTTTGATGGTGATTGAAGGGAACCATGAG 1060 |||| ||| || | | || || |||||||| | |||||| | |||||||||||||| Sbjct 20776905 AGGTACATGCAGCCTATCACATCTAAAGTTCCCATAATGGTGGTAGAAGGGAACCATGAA 20776846 Query 1061 ATCGAATTGCAAGCAGAGAACAAGACATTTGAAGCTTATAGTTCAAGATTCGCTTTCCCT 1120 || ||| || || || || |||| |||| |||| ||||||||||| || ||||| Sbjct 20776845 ATAGAACAACAGGCTGAAAATCAGACTTTTGTTTCTTACAGTTCAAGATTTGCATTCCCA 20776786 Query 1121 TTTAATGAAAGCGGCTCGTCTTCTACGCTATATTATTCCTTTAACGCTGGTGGGATTCAC 1180 | | | || || || ||||| || || | || ||||| ||||| || ||||| || || Sbjct 20776785 TCTGAAGAGAGTGGATCGTCATCCACATTGTACTATTCTTTTAATGCAGGTGGCATACAT 20776726 Query 1181 TTTGTTATGCTTGGTGCCTACATTGCGTATGACAAATCAGCGGAAC 1226 ||| | |||||||||||||| | | ||||| ||||||| |||| Sbjct 20776725 TTTATCATGCTTGGTGCCTATGTATCCTATGATAAATCAGGTGAAC 20776680 Score = 132 bits (146), Expect = 9e-29 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1218 CAGCGGAACAATATGAATGGTTAAAGAAGGATTTGGCTAAAGTCGATAGATCGGTAACTC 1277 ||||||| ||||| || ||||| | | ||| | ||| || || ||| || |||| Sbjct 20776459 CAGCGGATCAATACGAGTGGTTGGAAAGGGACCTAGCTTTTGTTGACAGAGAAGTGACTC 20776400 Query 1278 CATGGTTAGTAGCTTCTTGGCATCCACCTTGGTATAGTTCTTATACAGCGCATTACAGAG 1337 ||||||| |||||| | ||||| ||||||||||| || | || | ||||||||||||| Sbjct 20776399 CATGGTTGGTAGCTGCATGGCACCCACCTTGGTACAGCACCTACAAGGCGCATTACAGAG 20776340 Query 1338 AAGCAGAATGTATGAAAGAAGCTATGGAGGAATTACTTTATTCTTATGGTACCGACATTG 1397 ||||||| || |||| | || ||||| || || || ||| |||||| ||||||| Sbjct 20776339 AAGCAGAGTGCATGAGGGTAGAGATGGAAGACTTGCTGTATGAGTATGGTGTTGACATTG 20776280 Query 1398 TCTTTAACGGACATGT 1413 |||| || |||||||| Sbjct 20776279 TCTTCAATGGACATGT 20776264 Score = 123 bits (136), Expect = 5e-26 Identities = 149/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 471 TCACAGGTGAGTTCCAAATCGGAAAGAAGGTGAAGCCATTAGATCCGACAAGTATCAACA 530 |||||||||| |||||||| || | || | | || ||||||| || ||| | Sbjct 20779887 TCACAGGTGAATTCCAAATTGGGGACAACATAACACCGCTAGATCCTGAAACTATAGCAA 20779828 Query 531 GTGTTGTTCAATTCGGAACCTTGAGGCACT--CACTGAGTCATGAAGCTAAAGGACATTC 588 |||||||||| | |||| | | | ||| || | | | ||||||| | || |||| Sbjct 20779827 GTGTTGTTCAGTATGGAATAT--ATGGACTGCCAATAACTGATGAAGCAACGGGCTATTC 20779770 Query 589 ACTTGTTTATAGTCAACTTTATCCTTTCGACGGTCTCCTTAACTACACTTCTGGAATCAT 648 ||| |||| | ||||||||||||||| || ||||| | ||||||||||||||||| || Sbjct 20779769 TCTTATTTACAATCAACTTTATCCTTTTGAAGGTCTTCAGAACTACACTTCTGGAATTAT 20779710 Query 649 ACACCATGTTCGCATTACAGG 669 ||||||||||||| | ||||| Sbjct 20779709 ACACCATGTTCGCCTCACAGG 20779689 Score = 75.2 bits (82), Expect = 2e-11 Identities = 159/235 (68%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 773 AGTTATCCTGGTCGAATAGCGGTTGTTGGTGATCTTGGTCTCACTTATAACACTACTGAT 832 |||||||| |||| ||||| ||| |||| ||| | |||||||| | || |||| Sbjct 18694975 AGTTATCCCAGTCGGATAGCAGTTATTGGAGATTTGGGTCTCACAAAAAATTCTACCACA 18695034 Query 833 ACAATTAGTCACTTGATTCATAACTCTCCGGATCTCATTTTATTGATCGGCGACGTGAGT 892 |||||| ||| |||||||| || ||| | |||||| || | || ||| | | | Sbjct 18695035 ACAATTGATCATTTGATTCAGAATGATCCTTCAATGATTTTAATGGTTGGAGACCTAACT 18695094 Query 893 TATGCAAACTTGTATCTAACAAACGG--GACTAGCT-CTGATTGTTATTCTTGCTCTTTC 949 |||||||| || | |||| || || || ||| || | || || | || Sbjct 18695095 TATGCAAATCAATACCGTACAACTGGTGGAAAAGGAGCTGCATGCTTCTCATGTGCATTT 18695154 Query 950 CCTGAGACACCTATACATGAGACGTATCAGCCACGTTGGGACTACTGGGGTAGGT 1004 ||||| ||||||| ||||||||||| || |||||||| ||||| |||| Sbjct 18695155 CCTGATGCACCTATCAGAGAGACGTATCAACCCCGTTGGGATGGGTGGGGAAGGT 18695209 Score = 75.2 bits (82), Expect = 2e-11 Identities = 132/190 (69%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 290 CCGTCAACTTTAGATGGACCGTTCGTTCCGGTGACGGTGCCATTGGACACCTCTCTCCGG 349 ||| |||| | |||||||| ||||| || || || || || | |||| |||| Sbjct 20781081 CCGACAACACTTGATGGACCCTTCGTGCCTGTCACTGTCCCTCTTGACAAAAGCTTCCGT 20781022 Query 350 GGGCAAGCCATCGATTTGCCCGACACCGATCCCCGCGTCCGCCGGCGTGTCATTGGTTTT 409 ||| | || | || ||||| | || |||||||| || | | ||| || ||| Sbjct 20781021 GGGAATGCTGTGGACTTGCCAGCTACAGATCCCCGAGTGCAAAGAATTGTTGAAGGGTTT 20780962 Query 410 GAGCCGGAGCAAAtctctctctccctctcctcCGATC-ATGATTCCATCTGGGTCTCTTG 468 | ||| ||||||||||| | || ||||| | | | | |||| || | ||||||||||| Sbjct 20780961 GCGCCTGAGCAAATCTCAGTATCACTCTC-TGCAACCTATGACTCTGTATGGGTCTCTTG 20780903 Query 469 GATCACAGGT 478 |||||||||| Sbjct 20780902 GATCACAGGT 20780893 Score = 64.4 bits (70), Expect = 4e-08 Identities = 53/65 (82%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1001 AGGTTTATGGAGAATCTGACTTCCAAAGTTCCTTTGATGGTGATTGAAGGGAACCATGAG 1060 || || |||||||| | || || | ||||||| ||||||| |||||||| ||||||||| Sbjct 18697436 AGATTCATGGAGAAGTTAACCTCAAGAGTTCCTATGATGGTCATTGAAGGCAACCATGAG 18697495 Query 1061 ATCGA 1065 || || Sbjct 18697496 ATTGA 18697500 Score = 59.0 bits (64), Expect = 2e-06 Identities = 124/182 (68%), Gaps = 10/182 (5%) Strand=Plus/Plus Query 1226 CAATATGAATGGTTAAAGAAGGATTTGGCTAAAGTCGATAGATCG----GTAACTCCATG 1281 ||||||| ||| ||||| | ||| ||| | ||||| || ||||| || || Sbjct 18697759 CAATATGCCTGGCTAAAGGAAGAT----CTACAACACATAGACCGCACAGTAACCCCCTG 18697814 Query 1282 GTTAGTAGCTTCTTGGCATCCACCTTGGTATAGTTCTTATACAGCGCATTA-CAGAGAAG 1340 | | |||||| | ||||||||||||||||||| ||| | | ||||| ||| ||| Sbjct 18697815 GCTGGTAGCTGCATGGCATCCACCTTGGTATAACAGCTATTCTTCACATTATCAG-GAAT 18697873 Query 1341 CAGAATGTATGAAAGAAGCTATGGAGGAATTACTTTATTCTTATGGTACCGACATTGTCT 1400 ||||| |||| | | | ||||| | | | || ||| ||||| ||| ||||| | Sbjct 18697874 TTGAATGCATGAGACAGGAAATGGAAGCAATTCTGTATCAGTATGGCGTCGATATTGTTT 18697933 Query 1401 TT 1402 || Sbjct 18697934 TT 18697935 Score = 51.8 bits (56), Expect = 3e-04 Identities = 54/71 (76%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 1617 AGTTCTGTTGGGATCGGCAACCTGATTATAGTGCCCTGAGAGAAAGCAGCTTTGGCCATG 1676 |||| |||||| | ||||| || | ||||| ||||||||||||||||| |||| Sbjct 18699002 AGTTTTGTTGGAACAAACAACCAGAGTGGAGTGCATACAGAGAAAGCAGCTTTGGGCATG 18699061 Query 1677 GAATCCTAGAG 1687 |||| || ||| Sbjct 18699062 GAATACTTGAG 18699072 Score = 50.0 bits (54), Expect = 9e-04 Identities = 97/141 (69%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1409 CATGTGCATGCTTATGAACGGTCGAACAGAGTATACAATTACGAACTGGACCCATGTGGT 1468 || |||||||||||||| || ||| ||||| || || || | | || ||||||| Sbjct 18698788 CAGGTGCATGCTTATGAGCGCATGAATAGAGTTTATAACTATACATTAGATTCATGTGGA 18698847 Query 1469 CCAGTTTACATTGTGATTGGTGATGGAGGTAACCGTGA-AAAGATGGCGATCGAGCATGC 1527 || || ||| | |||| ||||| || || ||| |||| || | |||| || Sbjct 18698848 CCTGTCTACTTAACAGTTGGAGATGGTGGAAATATTGAGAAAGTTGATG-TCGATTTCGC 18698906 Query 1528 AGATGACCCCGGTAAATGTCC 1548 ||||||||| || || || || Sbjct 18698907 AGATGACCCTGGAAAGTGCCC 18698927 Score = 37.4 bits (40), Expect = 5.6 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 84 GATTAGTT-TAACGATAATGACTATTTAAT 112 ||||| || | ||||||||||||||||||| Sbjct 4527846 GATTATTTGTGACGATAATGACTATTTAAT 4527817 Score = 37.4 bits (40), Expect = 5.6 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 84 GATTAGTT-TAACGATAATGACTATTTAAT 112 ||||| || | ||||||||||||||||||| Sbjct 4763835 GATTATTTGTGACGATAATGACTATTTAAT 4763806 Score = 37.4 bits (40), Expect = 5.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1849 TTTTTGGGACTTTGATCATGTAACAGT 1875 ||||||| ||||||||||| ||||||| Sbjct 20460157 TTTTTGGTACTTTGATCAT-TAACAGT 20460182 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 167 bits (184), Expect = 5e-39 Identities = 211/289 (73%), Gaps = 12/289 (4%) Strand=Plus/Plus Query 1409 CATGTGCATGCTTATGAACGGTCGAACAGAGTATACAATTACGAACTGGACCCATGTGGT 1468 || || ||||||||||| |||| || |||| || || ||| | | || ||||||||| Sbjct 10563633 CAGGTTCATGCTTATGAGAGGTCAAATCGAGTTTATAACTACAATTTAGATCCATGTGGT 10563692 Query 1469 CCAGTTTACATTGTGATTGGTGATGGAGGTAACCGTGAAAAGATGGCGATCGAGCATGCA 1528 || ||||| || |||| ||||| ||||| || ||||||||||| ||| | |||| Sbjct 10563693 CCTGTTTATATCACAGTTGGAGATGGGGGTAATCGAGAAAAGATGGCAATCAAATATGCT 10563752 Query 1529 GATGACCCCGGTAAATGTCCAGAGCCGTTAACCACGCCCGATCCAGTCATGGGTGGGTTT 1588 ||||| || || || ||||| || | || || || || |||| | ||||||||| ||| Sbjct 10563753 GATGATCCTGGCAACTGTCCGGA-CAATTGACTACTCCAGATCAATACATGGGTGGATTT 10563811 Query 1589 TGCGCGTGGAACTTCAC----------GCCGTCTGATAAGTTCTGTTGGGATCGGCAACC 1638 | || || ||||| || || | ||||||||||||||| |||||||| Sbjct 10563812 TTTGCTACAAATTTCACATCTGGCCCAGCAGT-GGGTAAGTTCTGTTGGGACCGGCAACC 10563870 Query 1639 TGATTATAGTGCCCTGAGAGAAAGCAGCTTTGGCCATGGAATCCTAGAG 1687 || || ||| | | |||||||| |||||||||||||| ||||||||| Sbjct 10563871 CGAATACAGTCCATTAAGAGAAAGTAGCTTTGGCCATGGTATCCTAGAG 10563919 Score = 163 bits (180), Expect = 6e-38 Identities = 155/197 (79%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 1218 CAGCGGAACAA-TATGAATGGTTAAAGAAGGATTTGGCTAAAGTCGATAGATCGGTAACT 1276 ||||||| ||| || | ||| || ||| || ||||| || || |||||||| ||||| Sbjct 10562187 CAGCGGATCAAATACAAGTGGCTAGAGAGAGACTTGGCAAATGTTGATAGATCAATAACT 10562246 Query 1277 CCATGGTTAGTAGCTTCTTGGCATCCACCTTGGTATAGTTCTTATACAGCGCATTACAGA 1336 |||||| |||||||| ||||||| ||||||||||| ||||| || | ||| ||||| || Sbjct 10562247 CCATGGCTAGTAGCTGCTTGGCACCCACCTTGGTACAGTTCCTACAAAGCTCATTATAGG 10562306 Query 1337 GAAGCAGAATGTATGAAAGAAGCTATGGAGGAATTACTTTATTCTTATGGTACCGACATT 1396 || | ||| || | || | || ||||| || |||||||| ||||||||| |||||| Sbjct 10562307 GAGGTAGAGTGCACGAGGGTGGCGATGGAAGAGTTACTTTACTCTTATGGTGTTGACATT 10562366 Query 1397 GTCTTTAACGGACATGT 1413 |||||||| |||||||| Sbjct 10562367 GTCTTTAATGGACATGT 10562383 Score = 73.4 bits (80), Expect = 8e-11 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1686 AGATGAAGAACGAGACATGGGCACTATGGACATGGTATAGGAATCAAGACTCGAGCAGTG 1745 || ||||||| || || ||||| | ||||||||||| | ||||| || || ||||| Sbjct 10564758 AGGTGAAGAATGAAACCTGGGCCTTGTGGACATGGTACCGAAATCAGGATTCTTACAGTG 10564817 Query 1746 AAGTCGGAGATCAGATTTATATTGTGAGACAACCTGAT 1783 |||| || ||||| || || || || || ||||||||| Sbjct 10564818 AAGTTGGGGATCAAATCTACATAGTAAGGCAACCTGAT 10564855 Score = 39.2 bits (42), Expect = 1.6 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 147 AACATTAAAAAATACAAAAAGCCGAAACC 175 |||||| |||||||||||||| |||||| Sbjct 1482183 AACATTCAAAAATACAAAAAGATGAAACC 1482211 Score = 39.2 bits (42), Expect = 1.6 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 250 CTGCTTTCTCTCGCCGGCAATCTCCTCCGCCCACTC 285 |||| | ||||||| ||| ||||||||||| |||| Sbjct 21259209 CTGCCTCTTCTCGCCTGCAGTCTCCTCCGCCAACTC 21259174 Score = 37.4 bits (40), Expect = 5.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 5 CATATAAAATTCTTTAGTAATAATT 29 ||| ||||||| ||||||||||||| Sbjct 16595907 CATTTAAAATTATTTAGTAATAATT 16595931 Score = 37.4 bits (40), Expect = 5.6 Identities = 30/35 (86%), Gaps = 1/35 (3%) Strand=Plus/Plus Query 84 GATTAGTT-TAACGATAATGACTATTTAATCGGGC 117 ||||| || |||||| |||||||||||| | |||| Sbjct 32011787 GATTATTTATAACGAGAATGACTATTTACTAGGGC 32011821 Score = 37.4 bits (40), Expect = 5.6 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 1077 AGAACAA--GACATTTGAAGCTTATAGTT 1103 ||||||| |||||| ||||||||||||| Sbjct 36525623 AGAACAATAGACATTAGAAGCTTATAGTT 36525595 Score = 37.4 bits (40), Expect = 5.6 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 1077 AGAACAAGA--CATTTGAAGCTTATAGTT 1103 ||||||||| |||| ||||||||||||| Sbjct 36567835 AGAACAAGAGACATTAGAAGCTTATAGTT 36567807 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 42.8 bits (46), Expect = 0.13 Identities = 42/52 (81%), Gaps = 2/52 (4%) Strand=Plus/Minus Query 43 AAATACAGTAGTTGCGAGTTTAATTGACTAGAGAGAGTCATGATTAGTTTAA 94 ||||| | ||| ||| || ||||| || |||||| | |||||||||||||| Sbjct 17741285 AAATATAATAGGTGC-AGCTTAAT-GATTAGAGATATACATGATTAGTTTAA 17741236 Score = 37.4 bits (40), Expect = 5.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 85 ATTAGTT-TAACGATAATGACTATTTA 110 |||| || ||||||||||||||||||| Sbjct 40921233 ATTATTTGTAACGATAATGACTATTTA 40921207 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 41.0 bits (44), Expect = 0.46 Identities = 27/29 (93%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 82 ATGATTAGTT-TAACGATAATGACTATTT 109 ||||||| || |||||||||||||||||| Sbjct 1236854 ATGATTATTTATAACGATAATGACTATTT 1236826 Score = 39.2 bits (42), Expect = 1.6 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 83 TGATTAGTT-TAACGATAATGACTATTT 109 |||||| || |||||||||||||||||| Sbjct 12470135 TGATTATTTGTAACGATAATGACTATTT 12470162 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.6 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 84 GATTAGTT-TAACGATAATGACTATTTA 110 ||||| || ||||||||||||||||||| Sbjct 10092135 GATTATTTGTAACGATAATGACTATTTA 10092162 Score = 37.4 bits (40), Expect = 5.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1575 TCATGGGTGGGTTTTGCGCGTGG 1597 ||||||||||||||||| ||||| Sbjct 13050545 TCATGGGTGGGTTTTGCTCGTGG 13050523 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 37.4 bits (40), Expect = 5.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1086 CATTTGAAGCTTATAGTTCAAGATT 1110 |||||||||||| ||||| |||||| Sbjct 13806049 CATTTGAAGCTTCTAGTTTAAGATT 13806073 Score = 37.4 bits (40), Expect = 5.6 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 153 AAAAAATACAAAAAGCCGAAACCCGCCCACTACAATGAAAAG 194 |||||||||||||| || ||||| ||||||| |||||| Sbjct 23644478 AAAAAATACAAAAA-CCAAAACCAAAACACTACACGGAAAAG 23644438 Score = 37.4 bits (40), Expect = 5.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 144 GACAACATTAAAAAATACAA 163 |||||||||||||||||||| Sbjct 28045190 GACAACATTAAAAAATACAA 28045209 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 5.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 595 TTATAGTCAACTTTATCCTTTCG 617 |||||||||||||||| |||||| Sbjct 27472255 TTATAGTCAACTTTATTCTTTCG 27472277 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 37.4 bits (40), Expect = 5.6 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1036 GATGGTGATTGAAGGGAACCATGAGATCGA 1065 |||||||| ||||||||||| || ||||| Sbjct 1123816 GATGGTGACCGAAGGGAACCACGACATCGA 1123787 Score = 37.4 bits (40), Expect = 5.6 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1031 CCTTTGATGGTGATTGAAGGGAACCATGAGATCGA 1065 |||| |||||||| |||| ||||||||||| || Sbjct 1132987 CCTTGGATGGTGACGCAAGGCAACCATGAGATTGA 1133021 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 37.4 bits (40), Expect = 5.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1824 ATCAAACAGAGATGGTCTAA 1843 |||||||||||||||||||| Sbjct 17120565 ATCAAACAGAGATGGTCTAA 17120546 Score = 37.4 bits (40), Expect = 5.6 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 936 ATTCTTGCTCTTTCCCTGAG 955 |||||||||||||||||||| Sbjct 34672091 ATTCTTGCTCTTTCCCTGAG 34672110 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 37.4 bits (40), Expect = 5.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1086 CATTTGAAGCTTATAGTTCAAGATT 1110 |||||||| ||| |||||||||||| Sbjct 9479961 CATTTGAAACTTCTAGTTCAAGATT 9479985 Score = 37.4 bits (40), Expect = 5.6 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 17 TTTAGTAATAATTATTAGGTCTT 39 ||||||||| ||||||||||||| Sbjct 25281029 TTTAGTAATTATTATTAGGTCTT 25281051 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 5.6 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1086 CATTTGAAGCTTATAGTTCAAGATT 1110 |||||||| ||| |||||||||||| Sbjct 13648563 CATTTGAAACTTCTAGTTCAAGATT 13648587 Score = 37.4 bits (40), Expect = 5.6 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 1168 TGGTGGGATTCACTTTGTT-ATGCTTG 1193 ||||||||||||||||||| | ||||| Sbjct 15640633 TGGTGGGATTCACTTTGTTCAGGCTTG 15640659 Score = 37.4 bits (40), Expect = 5.6 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 6 ATATAAAATTCTTTAGTAATAATTATTA 33 |||||| ||| |||| |||||||||||| Sbjct 17494670 ATATAATATTATTTAATAATAATTATTA 17494643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 985396059899 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2