BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1167 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr7S 176 5e-42 lcl|Jr4D 158 1e-36 lcl|Jr3S 145 9e-33 lcl|Jr3D 138 1e-30 lcl|Jr2D 86.0 8e-15 lcl|Jr4S 62.6 9e-08 lcl|Jr6D 60.8 3e-07 lcl|Jr8S 51.8 2e-04 lcl|Jr5D 44.6 0.023 lcl|Jr6S 39.2 0.99 lcl|Jr8D 37.4 3.5 lcl|Jr5S 37.4 3.5 lcl|Jr2S 37.4 3.5 lcl|Jr1S 37.4 3.5 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 176 bits (194), Expect = 5e-42 Identities = 151/187 (81%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 661 GAGCTCAAGAAAGTTAACCGATCAGAGACTCCGTGGCTGATTGTTCTGGTTCACGCTCCC 720 ||||||| ||||| || ||| | || ||||| ||||| || ||||| ||||| | || Sbjct 19374222 GAGCTCACCAAAGTAAATCGAGCTGAAACTCCATGGCTTATAGTTCTTCTTCACTCACCA 19374281 Query 721 TGGTACAACAGCAATAATTATCATTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAG 780 ||||| |||||||| || || |||||||||||||| || ||||||||||| || || || Sbjct 19374282 TGGTATAACAGCAACAACTACCATTATATGGAAGGAGAAAGCATGAGAGTGACTTTTGAA 19374341 Query 781 CCATGGTTCGTTGAAAACAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCTTACGAG 840 | ||||| ||||||| |||||| || || || |||||||||||||||||||| || ||| Sbjct 19374342 TCCTGGTTTGTTGAAAGCAAAGTTGACATTGTTTTTGCTGGTCATGTTCATGCCTATGAG 19374401 Query 841 CGATCAG 847 || |||| Sbjct 19374402 CGTTCAG 19374408 Score = 86.0 bits (94), Expect = 8e-15 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 424 TTTGCCGGAGATTTATCTTATGCTGATGACCATCCTAACCACGACCAAAGA-AAATGGGA 482 |||| || ||| | |||||||||||||| || || ||||| || ||| || | |||||| Sbjct 19373524 TTTGTAGGTGATCTTTCTTATGCTGATGATCACCCAAACCATGA-CAATGAGAGATGGGA 19373582 Query 483 TTCATACGGCCGGTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGATTTGGGCTGCAGG 542 ||| ||||| ||| | || || || ||||||||||| ||||||||| |||| || Sbjct 19373583 CACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGG 19373642 Query 543 GAACCACGAGATAGATTACGC 563 || || || | ||||| || Sbjct 19373643 CAATCATGAACTTGATTATGC 19373663 Score = 77.0 bits (84), Expect = 4e-12 Identities = 80/105 (76%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 966 CAATTTCATTGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCGAGTTTCGGACACGC 1025 || ||| | ||| || ||||||||||| || || || |||| || || || || ||||| Sbjct 19374852 CAGTTTTACTGACCCACAACCAAGTTATTCTGCCTTCCGGGAAGCAAGCTTTGGGCACGC 19374911 Query 1026 TATTTTGGAAATAAAGAACAGGACTCATGCACATTACACTTGGCA 1070 ||| ||| |||||||| || || ||||| || || |||||||| Sbjct 19374912 AATTCTGGCTATAAAGAATAGAACCCATGCTCACTATACTTGGCA 19374956 Score = 59.0 bits (64), Expect = 1e-06 Identities = 73/100 (73%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 868 TACAATATCACTGATGGAATGAGTACTCCGGTTAAAGATCAAAATGCTCCGGTTTACATC 927 |||||||| || |||||| | || || || | || || ||| ||| || | ||||| Sbjct 19374519 TACAATATAACAGATGGACTCAGCACGCCAATAAAGGACCAATCTGCACCAATATACATA 19374578 Query 928 ACCATTGGAGATGGAGGCAACATAGAAGGAATCGCTAACA 967 || ||||||||||| || || | ||||| || ||| ||| Sbjct 19374579 ACAATTGGAGATGGCGGTAATGTTGAAGGCATTGCTGACA 19374618 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 158 bits (174), Expect = 1e-36 Identities = 146/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 661 GAGCTCAAGAAAGTTAACCGATCAGAGACTCCGTGGCTGATTGTTCTGGTTCACGCTCCC 720 ||||||| |||||||| ||| | || ||||| ||||| || ||||| ||||| | || Sbjct 7757968 GAGCTCACCAAAGTTAATCGAGCTGAAACTCCATGGCTTATAGTTCTTCTTCACTCACCA 7758027 Query 721 TGGTACAACAGCAATAATTATCATTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAG 780 ||||| |||||||| || || |||| ||||||||| || ||||||||||| | || || Sbjct 7758028 TGGTATAACAGCAACAACTACCATTTTATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAA 7758087 Query 781 CCATGGTTCGTTGAAAACAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCTTACGAG 840 | ||||| ||||||| |||||| || || || || || |||||||||||||| || ||| Sbjct 7758088 TCCTGGTTTGTTGAAAGCAAAGTTGACATTGTGTTAGCCGGTCATGTTCATGCCTATGAG 7758147 Query 841 CGATC 845 || || Sbjct 7758148 CGTTC 7758152 Score = 102 bits (112), Expect = 1e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 740 ATCATTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTTGAAAACA 799 |||||||||||||||| || | ||||||||| | | |||| |||||| || || | | Sbjct 28097844 ATCATTATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATA 28097903 Query 800 AAGTCGATATCGTCTTTGCTGGTCATGTTCATGCTTACGAGCGATC 845 |||| ||| | ||||||||||||||||||||||| || || ||||| Sbjct 28097904 AAGTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 28097949 Score = 73.4 bits (80), Expect = 5e-11 Identities = 100/137 (73%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 424 TTTGCCGGAGATTTATCTTATGCTGATGACCATCCTAACCACGACCAAAGAAA-ATGGGA 482 ||||| || ||| | |||||||| ||||| || || | || ||| || || | |||||| Sbjct 7756250 TTTGCGGGTGATCTTTCTTATGCAGATGATCACCCATATCATGAC-AATGAGAGATGGGA 7756308 Query 483 TTCATACGGCCGGTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGATTTGGGCTGCAGG 542 ||| || |||||| | || || || ||||||||||| ||||||||| |||| || Sbjct 7756309 CACATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGG 7756368 Query 543 GAACCACGAGATAGATT 559 || || || | |||| Sbjct 7756369 CAATCATGAACTTGATT 7756385 Score = 73.4 bits (80), Expect = 5e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 966 CAATTTCATTGATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCGAGTTTCGGACACGC 1025 || ||||| ||| || ||||||||||| || || || |||| || || || || || || Sbjct 7758499 CAGTTTCACTGACCCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGC 7758558 Query 1026 TATTTTGGAAATAAAGAACAGGACTCATGCACATTACACTTGGCA 1070 | | | | |||||||| ||||| ||||| || || |||||||| Sbjct 7758559 AACTCTCGCTATAAAGAATAGGACCCATGCCCACTATACTTGGCA 7758603 Score = 71.6 bits (78), Expect = 2e-10 Identities = 80/107 (75%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 976 GATCCCCAACCAAGTTACTCGGCGTTTAGGGAGGCGAGTTTCGGACACGCTATTTTGGAA 1035 || ||||| ||||| |||||||| | | || || || || || || | ||||| || Sbjct 28098975 GAGCCCCAGCCAAGCTACTCGGCTTACCGTGAAGCCAGCTTTGGTCATGGGATTTTAGAC 28099034 Query 1036 ATAAAGAACAGGACTCATGCACATTACACTTGGCATAGGAATAAAGA 1082 |||||||||||||||||||| ||| ||||||| | ||| |||| Sbjct 28099035 ATAAAGAACAGGACTCATGCCTATTTTGGTTGGCATCGCAATCAAGA 28099081 Score = 62.6 bits (68), Expect = 9e-08 Identities = 60/77 (78%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 881 ATGGAATGAGTACTCCGGTTAAAGATCAAAATGCTCCGGTTTACATCACCATTGGAGATG 940 |||| || | ||||| ||| || ||| |||||| |||||||| ||||||||||||| Sbjct 28098776 ATGGGTTGTGCACTCCCATTAGTGACCAATCTGCTCCTGTTTACATAACCATTGGAGATG 28098835 Query 941 GAGGCAACATAGAAGGA 957 |||| || | |||||| Sbjct 28098836 GAGGAAATCTTGAAGGA 28098852 Score = 41.0 bits (44), Expect = 0.28 Identities = 45/60 (75%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 169 GTTCACATAACGCAAGGAGATCACGCTGGTCGAGGTATGATCATCTCGTGGGTAACACCA 228 || || ||||| ||||||||||||| || ||| |||| |||| ||||| || ||| Sbjct 28095878 GTGCATATAACTCAAGGAGATCACGAGGGAAAGGGTGTGATTGTCTCTTGGGTTACTCCA 28095937 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 145 bits (160), Expect = 9e-33 Identities = 142/181 (78%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 669 GAAAGTTAACCGATCAGAGACTCCGTGGCTGATTGTTCTGGTTCACGC--TCCC--TGGT 724 ||||||||| | | ||||| || |||||||||||||| ||||| |||| |||| Sbjct 24737200 GAAAGTTAATAGGGCCGAGACACCTTGGCTGATTGTTCT----CACGCATTCCCCTTGGT 24737255 Query 725 ACAACAGCAATAATTATCATTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCAT 784 | || ||| |||| |||||||||||||| || || | ||||||||| | ||| ||| | | Sbjct 24737256 ATAATAGCTATAACTATCATTATATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCT 24737315 Query 785 GGTTCGTTGAAAACAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCTTACGAGCGAT 844 |||| || | | ||||| ||| | || ||||||||||||||||||||||| ||||||| Sbjct 24737316 GGTTTGTGAAGTATAAAGTTGATGTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGAT 24737375 Query 845 C 845 | Sbjct 24737376 C 24737376 Score = 53.6 bits (58), Expect = 4e-05 Identities = 47/59 (80%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 576 TCACAAAGTACATCTTCACTTTGGTACTAAATCAAACGAGCTTCAGCTTACATCATCGT 634 ||| | ||||| || | ||||||| | |||||| ||||||||||||||||||| || Sbjct 24736420 TCAAAGAGTACTGCTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGT 24736478 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 138 bits (152), Expect = 1e-30 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 670 AAAGTTAACCGATCAGAGACTCCGTGGCTGATTGTTCTGGTTCACGCTCCCTGGTACAAC 729 ||||||||| | | ||||| || ||| |||||||||| | || | |||||||| || Sbjct 5532665 AAAGTTAACAGGACTGAGACACCTTGGTTGATTGTTCTTATGCATTCCCCCTGGTATAAT 5532606 Query 730 AGCAATAATTATCATTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTC 789 ||| | || |||||||||||||| || || | ||||||||| | || ||| |||||| Sbjct 5532605 AGCTACAACTATCATTATATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTT 5532546 Query 790 GTTGAAAACAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCTTACGAGCGATC 845 || | ||||||| ||| | || ||||| ||||||||||||||||| || ||||| Sbjct 5532545 GTGAAGTACAAAGTTGATGTGGTATTTGCAGGTCATGTTCATGCTTATGAACGATC 5532490 Score = 60.8 bits (66), Expect = 3e-07 Identities = 63/83 (76%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 576 TCACAAAGTACATCTTCACTTTGGTACTAAATCAAACGAGCTTCAGCTTACATCATCGTA 635 ||| | ||||| || | ||||||| | |||||| ||||||||||||||||||| || Sbjct 5532949 TCAAACAGTACTGCTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATAGTC 5532890 Query 636 CTCTCCTCTTACTCAACTTATGG 658 | | || |||||| | ||||| Sbjct 5532889 TTGGCTTCATACTCAGCATATGG 5532867 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 86.0 bits (94), Expect = 8e-15 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 686 AGACTCCGTGGCTGATTGTTCTGGTTCACGCTCCCTGGTACAACAGCAATAATTATCATT 745 ||||||| ||||| |||||||| | || | || ||||| |||||| | ||| | Sbjct 40280798 AGACTCCTTGGCTCATTGTTCTTATGCATGTGCCAATCTACAATAGCAATGAAGCTCACT 40280739 Query 746 ATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTTGAAAACAAAGTCG 805 | ||||| || || || ||| ||| | || ||| |||||| | | ||||||| | Sbjct 40280738 ACATGGAGGGGGAAAGTATGCGAGCTGTATTTGAGAGTTGGTTCATCCATTACAAAGTTG 40280679 Query 806 ATATCGTCTTTGCTGGTCATGTTCATGCTTACGAGCGATC 845 || | ||||||||||| ||||| |||||||| || |||| Sbjct 40280678 ATGTAGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATC 40280639 Score = 57.2 bits (62), Expect = 4e-06 Identities = 63/84 (75%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 478 TGGGATTCATACGGCCGGTTTGTGGAACCAAGCGCCGCGTATCAGCCTTGGATTTGGGCT 537 ||||| ||| || | || || |||| ||| | || |||||||| |||||||||||| Sbjct 40282620 TGGGACACATGGGGTCAATTCGTTGAACGAAGTACAGCATATCAGCCATGGATTTGGGCT 40282561 Query 538 GCAGGGAACCACGAGATAGATTAC 561 || || || || || ||||| ||| Sbjct 40282560 GCTGGAAATCATGAAATAGAGTAC 40282537 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 62.6 bits (68), Expect = 9e-08 Identities = 76/104 (73%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 742 CATTATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTTGAAAACAAA 801 || |||||||||||||| || ||| ||| | || ||| |||||| || | | | Sbjct 1043506 CACTATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGA 1043565 Query 802 GTCGATATCGTCTTTGCTGGTCATGTTCATGCTTACGAGCGATC 845 || ||| |||| |||||||| || |||||||| || || |||| Sbjct 1043566 GTTGATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATC 1043609 Score = 37.4 bits (40), Expect = 3.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 913 GCTCCGGTTTACATCACCATTGGAGATGGAGGCAA 947 ||||| || ||||| || ||||||||||||| || Sbjct 1044454 GCTCCAGTGTACATAACTGTTGGAGATGGAGGAAA 1044488 Score = 37.4 bits (40), Expect = 3.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 118 ATGCCACTCGAAACATTTCC 137 |||||||||||||||||||| Sbjct 14999452 ATGCCACTCGAAACATTTCC 14999471 Score = 37.4 bits (40), Expect = 3.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 118 ATGCCACTCGAAACATTTCC 137 |||||||||||||||||||| Sbjct 15210597 ATGCCACTCGAAACATTTCC 15210616 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 60.8 bits (66), Expect = 3e-07 Identities = 125/186 (67%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 657 GGATGAGCTCAAGAAAGTTAACCGATCAGAGACTCCGTGGCTGATTGTTCTGGTTCACGC 716 || ||| ||| ||||| |||| | |||| || |||||||| || || | || | Sbjct 36166048 GGTTGATCTCTCAAAAGTGGACCGGAAAAAGACACCTTGGCTGATCGTGCTATTCCATGT 36165989 Query 717 TCCCTGGTACAACAGCAATAATTATCATTATATGGAAGGTGAGAGCATGAGAGTTACGTT 776 ||| ||||| ||||| || || |||| | |||||||| |||| | | | Sbjct 36165988 TCCTTGGTATAACAGTAACAAGGCTCATCAAGGTGAAGGTGACGATATGATGATGGCCAT 36165929 Query 777 CGAGCCATGGTTCGTTGAAAACAAAGTCGATATCGTCTTTGCTGGTCATGTTCATGCTTA 836 || || | | | || ||| || ||||| || |||||||||||||||||||||| Sbjct 36165928 GGAACCCTTGCTTTATGCCGCCAATGTGGATATAGTACTTGCTGGTCATGTTCATGCTTA 36165869 Query 837 CGAGCG 842 ||| || Sbjct 36165868 CGAACG 36165863 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 51.8 bits (56), Expect = 2e-04 Identities = 45/56 (80%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 582 AGTACATCTTCACTTTGGTACTAAATCAAACGAGCTTCAGCTTACATCATCGTACT 637 ||||| || | ||||||| | |||||| ||||||||||||||||||| |||| Sbjct 276139 AGTACTGCTCCCTTTTGGTATTCAATCAAGAGAGCTTCAGCTTACATCATACTACT 276194 Score = 37.4 bits (40), Expect = 3.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1112 CAGATTCTATTTGGTTGAAGAAT 1134 |||||||||||||||||||| || Sbjct 18132437 CAGATTCTATTTGGTTGAAGTAT 18132415 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 44.6 bits (48), Expect = 0.023 Identities = 106/158 (67%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 686 AGACTCCGTGGCTGATTGTTCTGGTTCACGCTCCCTGGTACAACAGCAATAATTATCATT 745 |||| || ||| | |||||||| | || || || ||||| || | |||| |||| Sbjct 1123574 AGACCCCCTGGGTTCTTGTTCTGTTGCATGCGCCTTGGTATAATACTAATACAGCTCATC 1123515 Query 746 ATATGGAAGGTGAGAGCATGAGAGTTACGTTCGAGCCATGGTTCGTTGAAAACAAAG-TC 804 | ||||| || | ||||||| || | ||| ||| || || || | || Sbjct 1123514 AAGGCGAAGGAGAAATCATGAGACAAACAATGGAGAAGCTGTT-GTATAAGGCACGGGTC 1123456 Query 805 GATATCGTCTTTGCTGGTCATGTTCATGCTTACGAGCG 842 ||| | || |||||||| ||||||||||| || || || Sbjct 1123455 GATTTGGTTTTTGCTGGACATGTTCATGCATATGAACG 1123418 Score = 41.0 bits (44), Expect = 0.28 Identities = 36/45 (80%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 912 TGCTCCGGTTTACATCACCATTGGAGATGGAGGCAACATAGAAGG 956 || |||||| | ||||||||||||||||| || ||| ||||| Sbjct 1133721 TGGTCCGGTGCATATCACCATTGGAGATGGTGGGAACCGCGAAGG 1133765 Score = 41.0 bits (44), Expect = 0.28 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 925 ATCACCATTGGAGATGGAGGCAACATAGAAGG 956 ||||||||||| ||||| || |||| |||||| Sbjct 1142925 ATCACCATTGGCGATGGTGGAAACAGAGAAGG 1142956 Score = 37.4 bits (40), Expect = 3.5 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 802 GTCGATATCGTCTTTGCTGGTCATGTTCATGCTTACGAGCGAT 844 ||||| | || ||||| || ||||||||||| || || |||| Sbjct 1111667 GTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGAACGAT 1111625 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 0.99 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1108 ATTGCAGATTCTATTTGGTTGAAGAA 1133 |||||||||||| |||||||||| || Sbjct 13892775 ATTGCAGATTCTGTTTGGTTGAATAA 13892750 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 3.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 925 ATCACCATTGGAGATGGAGGCAACATA 951 ||||||||||||||| | ||||||||| Sbjct 3514923 ATCACCATTGGAGATAG-GGCAACATA 3514948 Score = 37.4 bits (40), Expect = 3.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 584 TACATCTTCACTTTGGTACTAAATCAA 610 ||||||| ||||||| ||||||||||| Sbjct 28758979 TACATCT-CACTTTGTTACTAAATCAA 28758954 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 3.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1081 GAAGACGAGTTTATTCCTGAGGC 1103 ||||||||| ||||||||||||| Sbjct 2934003 GAAGACGAGGTTATTCCTGAGGC 2934025 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 37.4 bits (40), Expect = 3.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1115 ATTCTATTTGGTTGAAGAATAGATA 1139 || |||||||||||||||||| ||| Sbjct 752367 ATACTATTTGGTTGAAGAATATATA 752391 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 3.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 460 AACCACGACCAAAGAAAATGGGATT 484 || ||||| |||||||||||||||| Sbjct 1165219 AAACACGAGCAAAGAAAATGGGATT 1165243 Score = 37.4 bits (40), Expect = 3.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1112 CAGATTCTATTTGGTTGAAGAAT 1134 |||||||||||||||||||| || Sbjct 6947784 CAGATTCTATTTGGTTGAAGTAT 6947806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607384740576 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2