BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=2583 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr2D 206 7e-51 lcl|Jr4S 178 4e-42 lcl|Jr4D 102 2e-19 lcl|Jr3S 100 8e-19 lcl|Jr3D 84.2 6e-14 lcl|Jr7S 78.8 3e-12 lcl|Jr5D 57.2 8e-06 lcl|Jr2S 53.6 1e-04 lcl|JrScfU0001 44.6 0.052 lcl|Jr8S 42.8 0.18 lcl|Jr7D 41.0 0.64 lcl|Jr6S 41.0 0.64 lcl|Jr6D 41.0 0.64 lcl|Jr8D 39.2 2.2 lcl|Jr1D 39.2 2.2 lcl|Jr5S 37.4 7.8 lcl|Jr1S 37.4 7.8 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 206 bits (228), Expect = 7e-51 Identities = 182/226 (81%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 1153 GTGAAGTATACCCCGCAATGGCACTGGCTTAGTGAAGAGCTTACAAGAGTTGATAGGGAG 1212 |||| ||| ||||| |||||| ||||||| |||||| | ||||| ||||| |||||| Sbjct 40280859 GTGACGTACACCCCTCAATGGATGTGGCTTAAAGAAGAGTTAACAAGGGTTGACAGGGAG 40280800 Query 1213 AAAACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGTAATGAAGCACAT 1272 || || |||||||| |||||| | ||||| || ||||| ||||| || |||||||| || Sbjct 40280799 AAGACTCCTTGGCTCATTGTTCTTATGCATGTGCCAATCTACAATAGCAATGAAGCTCAC 40280740 Query 1273 TTCATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTT 1332 | ||||||||| ||||| |||||||| | |||||| ||||| |||| |||||||| Sbjct 40280739 TACATGGAGGGGGAAAGTATGCGAGCTGTATTTGAGAGTTGGTTCATCCATTACAAAGTT 40280680 Query 1333 GATGTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGATC-GTAC 1377 |||||| |||||||||| ||||| ||||| || || ||||| |||| Sbjct 40280679 GATGTAGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATCTGTAC 40280634 Score = 199 bits (220), Expect = 1e-48 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 786 AGGCGATATGGGTCAGACATTCAACTCGTTATCCACGTTGGAACATTACATGGAGAGTGG 845 ||| ||| |||| ||||||| |||||| | || || | || ||||||||| ||||| Sbjct 40282753 AGGAGATTTGGGCCAGACATACAACTCTCTTTCTACTCTTGAGCATTACATGCAGAGTCC 40282694 Query 846 AGCTCAGGCTGTTTTATTTCTTGGAGATCTTTCTTATGCTGATAGATATCAGTATAATGA 905 || || |||| |||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 40282693 AGGACAAACTGTCTTATTTGTTGGAGATCTTTCTTATGCTGATAGATATCAGTACACTGA 40282634 Query 906 CGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTTGTGGAGCGTAGTACCGCTTATCAACC 965 |||||| | | ||||| | ||||||| || || || || ||||| || ||||| || Sbjct 40282633 TGTTGGTTTACGGTGGGACACATGGGGTCAATTCGTTGAACGAAGTACAGCATATCAGCC 40282574 Query 966 GTGGCTTTGGTCTGCAGGAAATCATGAAGTAGATTACATGCCATACATGG 1015 ||| ||||| |||| |||||||||||| |||| |||||||| || |||| Sbjct 40282573 ATGGATTTGGGCTGCTGGAAATCATGAAATAGAGTACATGCCTTATATGG 40282524 Score = 158 bits (174), Expect = 3e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 1495 AGGTTTACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCTAGCTATGGCCACTCT 1554 ||||||| || ||||| ||||||||||||||||| || ||||| || ||||| |||||| Sbjct 40279355 AGGTTTAGAGATCCACAACCAGATTATTCTGCATTCCGAGAAGCCAGTTATGGACACTCT 40279296 Query 1555 ACTCTGGATATAAAGAACCGAACACACGCTATATACCACTGGAACCGCAATGATGATGGG 1614 || ||||| ||||| || | ||||| || | ||||| ||||| || ||||||||||| Sbjct 40279295 ACGCTGGAGATAAAAAATAGGACACATGCAGTCTACCATTGGAATCGAAATGATGATGGC 40279236 Query 1615 AAGAAAGTGGCAACGGATGAATTTGTATTACACAACCAGTACTGG 1659 || ||||||||||| ||| || |||||||||| ||||||||| Sbjct 40279235 AAAAAAGTGGCAACTGATTCGTTCATATTACACAATCAGTACTGG 40279191 Score = 134 bits (148), Expect = 4e-29 Identities = 116/142 (82%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 1014 GGGGGAGGTGACACCTTTCAGGAAT--TACCTTCAGCGTTACACTACGCCTTACTTAGCC 1071 |||||| || | ||||||| ||| ||||| || || |||||||| ||||| || ||| Sbjct 40281771 GGGGGAAGTTAATCCTTTCA--AATCCTACCTCCATCGATACACTACACCTTATTTGGCC 40281714 Query 1072 TCAAAAAGTAGCAGTCCTCTTTGGTACGCTGTTAGGCGTGCATCTGCTCATATCATTGTC 1131 || |||||||||||||||||||||||| | | |||||||||||||||||||| || || Sbjct 40281713 TCCAAAAGTAGCAGTCCTCTTTGGTACTCCATCAGGCGTGCATCTGCTCATATAATCGTG 40281654 Query 1132 CTCTCCAGCTATTCGCCTTTTG 1153 || ||||||||||| | |||| Sbjct 40281653 CTATCCAGCTATTCATCATTTG 40281632 Score = 91.5 bits (100), Expect = 4e-16 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1374 GTACCGAATATCAAATGTGCGGTATAACGTGTCAAGCGGAGATCGTTACCCAGTTCCAGA 1433 ||| ||||| ||||| | || ||| | | || || || || ||||| || ||||| Sbjct 40279635 GTATCGAATTTCAAACATAAACTACAACATAACTAGTGGGGACCGCTACCCTGTACCAGA 40279576 Query 1434 TAAGTCAGCGCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAAGAAGGTCTGGCTGG 1493 || || || ||||| || || ||||||||||| ||||||||||| |||||||| |||| Sbjct 40279575 CAAATCTGCACCTGTGTACATAACAGTTGGAGATGGAGGAAATCAGGAAGGTCTTGCTGA 40279516 Query 1494 AAGGT 1498 ||||| Sbjct 40279515 AAGGT 40279511 Score = 87.8 bits (96), Expect = 5e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 671 TTGAGCATGATACAAAATACTATTACAAGATTGAAAGCGGTGAATCTTCTCGAGAGTTTT 730 || || |||| || || |||||||||||| | | || ||||| ||||||||||| |||| Sbjct 40283127 TTCAGTATGACACCAAGTACTATTACAAGTTAGGGAGTGGTGATTCTTCTCGAGAATTTT 40283068 Query 731 GGTTTGTTACACCACCACATGTACATCCAGATGCTTCCTACAAGTTTGGTATTATAGG 788 ||||| ||||| ||| | | ||||||||||| | ||| | ||||| || || || Sbjct 40283067 GGTTTCAAACACCTCCAAAGATTGATCCAGATGCTACTTACCATTTTGGGATCATCGG 40283010 Score = 51.8 bits (56), Expect = 4e-04 Identities = 47/58 (81%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 1659 GGGAAAG-AACATTCGACGGAGAAAGCTTAAGAAGCATTATATCAGGAGTGTTGTTGG 1715 ||| ||| || ||| | ||||||| | |||||||||||| | |||||||||||||| Sbjct 40278496 GGGCAAGCAATATTAGGAGGAGAAAATTGAAGAAGCATTATCTAAGGAGTGTTGTTGG 40278439 Score = 37.4 bits (40), Expect = 7.8 Identities = 29/32 (91%), Gaps = 2/32 (6%) Strand=Plus/Plus Query 803 CATTC-AACTC-GTTATCCACGTTGGAACATT 832 ||||| ||||| |||||||||||| ||||||| Sbjct 12516814 CATTCGAACTCTGTTATCCACGTTTGAACATT 12516845 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 178 bits (196), Expect = 4e-42 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 781 ATTATAGGCGATATGGGTCAGACATTCAACTCGTTATCCACGTTGGAACATTACATGGAG 840 ||| |||| ||| ||||||| || | || || | ||||| | || ||||||||| || Sbjct 1042042 ATTCTAGGTGATTTGGGTCAAACGTATAATTCTCTTTCCACTCTTGAGCATTACATGCAG 1042101 Query 841 AGTGGAGCTCAGGCTGTTTTATTTCTTGGAGATCTTTCTTATGCTGATAGATATCAGTAT 900 ||||| | ||| |||| |||| | |||| ||||| |||||||||||||||||| | || Sbjct 1042102 AGTGGGGGACAGACTGTCTTATATGTTGGTGATCTCTCTTATGCTGATAGATATGAATAC 1042161 Query 901 AATGACGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTTGTGGAGCGTAGTACCGCTTAT 960 || | ||||| | |||||||| ||||| |||||| | ||||| ||||| || ||| Sbjct 1042162 AACAATATTGGTATTCGATGGGATGCATGGGGCCGTTTTATTGAGCGAAGTACTGCATAT 1042221 Query 961 CAACCGTGGCTTTGGTCTGCAGGAAATCATGAAGTAGATTACATGCCA 1008 || || ||| ||||||| || || ||||||||| |||| ||||||||| Sbjct 1042222 CAGCCATGGATTTGGTCAGCTGGGAATCATGAAATAGAGTACATGCCA 1042269 Score = 140 bits (154), Expect = 9e-31 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1153 GTGAAGTATACCCCGCAATGGCACTGGCTTAGTGAAGAGCTTACAAGAGTTGATAGGGAG 1212 ||||| ||||| | |||||| ||||| |||| || | |||||| |||||| | Sbjct 1043389 GTGAAATATACACTTCAATGGAGGTGGCTGCAAAAAGAACTAAAAAGAGTGGATAGGAGG 1043448 Query 1213 AAAACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGTAATGAAGCACAT 1272 || ||||||||||| ||| || | |||| || || || |||| ||||| ||| || Sbjct 1043449 AAGACACCTTGGCTTATTATTCTCCTGCATGTACCCATCTACAGTAGTAACTCAGCCCAC 1043508 Query 1273 TTCATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTT 1332 | ||||| |||||||| |||||||| | |||||| ||||||||| | | |||| Sbjct 1043509 TATATGGAAGGTGAAAGTATGCGAGCTGTCTTTGAGAGATGGTTTGTCTGTTATAGAGTT 1043568 Query 1333 GATGTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGATCG 1374 ||| | | ||||||||||| ||||||||||| || |||||| Sbjct 1043569 GATTTCGTATTTGCTGGGCACGTTCATGCCTATGAAAGATCG 1043610 Score = 123 bits (136), Expect = 7e-26 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 475 GTACACATAACTCAAGGTGATTATGATGGTAAAGCTGTTATCATCTCTTGGGTTACACCT 534 || || || |||||||||||||||||||| || ||| | || || || ||||||||| || Sbjct 1040324 GTGCATATCACTCAAGGTGATTATGATGGAAAGGCTATAATAATTTCATGGGTTACAACT 1040383 Query 535 GATGAACCTGGTTCTAGCCAAGTACATTACGGTGCGGTTCAGGGGAAATATGAGTTTGTT 594 |||||||| || |||| ||||||| || || | || ||||||||| ||| | Sbjct 1040384 GATGAACCAGGGAATAGCAAAGTACAATATGGCACATCAAAGCAGAAATATGATTTTACT 1040443 Query 595 GCTCAAGGGAC-TTACCATAACTACACGTTTTACAAGTATAAGTCTGGCTTTATTCATCA 653 ||| | || || | || ||||| || |||| | | |||||| |||| |||||||| Sbjct 1040444 GCTGATGGCACAGTGGCA-AACTATACCTTTTCAACCTTTAAGTCCGGCTACATTCATCA 1040502 Query 654 CTGCCTTGTCTCTGACCTTGAG 675 ||||||||| || ||||||| Sbjct 1040503 CTGCCTTGTTGATGGCCTTGAG 1040524 Score = 118 bits (130), Expect = 3e-24 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 1495 AGGTTTACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCTAGCTATGGCCACTCT 1554 |||||| ||| ||||| ||||||||||||||||| || ||||| || ||||| || ||| Sbjct 1044606 AGGTTTTGGGACCCACAACCAGATTATTCTGCATTCCGTGAAGCCAGTTATGGTCATTCT 1044665 Query 1555 ACTCTGGATATAAAGAACCGAACACACGCTATATACCACTGGAACCGCAATGATGATGGG 1614 || |||| || | |||| |||| | ||| | ||||| ||||| || |||||||||||| Sbjct 1044666 ACATTGGAGATCAGGAACAGAACCCTCGCGTTTTACCATTGGAATCGAAATGATGATGGG 1044725 Query 1615 AAGAAAGTGGCAACGGATGAATTTGTATTACACAACCAGTACTGG 1659 || ||| | || ||| | | ||| |||| ||||||||| Sbjct 1044726 AAAAAAACAGAGACAGATTCAGTAACATTTTACAATCAGTACTGG 1044770 Score = 104 bits (114), Expect = 6e-20 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1374 GTACCGAATATCAAATGTGCGGTATAACGTGTCAAGCGGAGATCGTTACCCAGTTCCAGA 1433 ||| || || || ||| | | || || ||||||||||| || ||||| || || || || Sbjct 1044387 GTATCGCATCTCGAATATACATTACAATGTGTCAAGCGGTGACCGTTATCCTGTACCTGA 1044446 Query 1434 TAAGTCAGCGCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAAGAAGGTCTGGCTGG 1493 | | ||||| || || || || || |||||||| ||||||||||| |||||||| ||||| Sbjct 1044447 TGAATCAGCTCCAGTGTACATAACTGTTGGAGATGGAGGAAATCAGGAAGGTCTTGCTGG 1044506 Query 1494 AAGGT 1498 ||||| Sbjct 1044507 AAGGT 1044511 Score = 102 bits (112), Expect = 2e-19 Identities = 88/107 (82%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 373 GGAATCACAAGTAGTTTTATTCGATCTGAATGGCCTGCGGTTGATATACCACTTGATCAT 432 ||||||||||| | ||||||||| ||||||||||| |||||||||| || |||||| || Sbjct 1039621 GGAATCACAAGCACTTTTATTCGTTCTGAATGGCCATCGGTTGATATCCCTCTTGATAAT 1039680 Query 433 CA--TGTTTTCAAAGTCCCAAAAGGATATAATGCACCACAACAAGTA 477 | | ||||||| ||||||||| |||| || |||||||||||| Sbjct 1039681 GAAATATTTTCAA--TCCCAAAAGTTCATAACGCCCCACAACAAGTA 1039725 Score = 87.8 bits (96), Expect = 5e-15 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1026 ACCTTTCAGGAATTACCTTCAGCGTTACACTACGCCTTACTTAGCCTCAAAAAGTAGCAG 1085 |||||||| | || || || || | |||| || | |||| ||||| || | ||| Sbjct 1042835 ACCTTTCAAGTCATATCTACATCGATTTGCTACACCCAATATAGCATCAAATAGCACCAG 1042894 Query 1086 TCCTCTTTGGTACGCTGTTAGGCGTGCATCTGCTCATATCATTGTCCTCTCCAGCTATTC 1145 |||||| ||||| |||||| | | || ||||| ||||| |||||||| ||||||||||| Sbjct 1042895 TCCTCTCTGGTATGCTGTTCGAAGGGCGTCTGCACATATTATTGTCCTATCCAGCTATTC 1042954 Query 1146 GCCTTTTG 1153 || |||| Sbjct 1042955 TCCATTTG 1042962 Score = 84.2 bits (92), Expect = 6e-14 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 662 TCTCT-GACCTTGAGCATGATACAAAATACTATTACAAGATTGAAAGCGGTGAATCTTCT 720 ||||| | | || || || | || || ||||| |||||| ||| | || || |||||| Sbjct 1041708 TCTCTTGTCTTTTAGTATAACACGAAGTACTACTACAAGCTTGGAGTTGGCGATTCTTCT 1041767 Query 721 CGAGAGTTTTGGTTTGTTACACCACCACATGTACATCCAGATGCTTCCTACAAGTTTGGT 780 || || ||||||||| ||||| ||| || | |||||||||||||||| | ||||| Sbjct 1041768 CGTGAATTTTGGTTTCAAACACCTCCAAATATTGATCCAGATGCTTCCTATACTTTTGGA 1041827 Query 781 ATTATAGG 788 ||||| || Sbjct 1041828 ATTATTGG 1041835 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 102 bits (112), Expect = 2e-19 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 1155 GAAGTATACCCCGCAATGGCACTGGCTTAGTGAAG-AGCTTACAAGAGTTGATAGGGAGA 1213 ||| || || || |||| | |||||| || ||| | || | ||||| | ||| Sbjct 28097731 GAAATACACTCCACAATACAAATGGCTT-GTAAAGGAACTGCCCAGAGTAAACAGGACTG 28097789 Query 1214 AAACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGTAATGAAGCACATT 1273 | || || ||||| || ||||| ||||| |||| |||| | ||| ||| | |||| Sbjct 28097790 AGACGCCGTGGCTTATCGTTTTTATGCATTGCCCACTATATAGTAGTTATGTACATCATT 28097849 Query 1274 TCATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTG 1333 ||||| || |||| |||| ||| || |||| | |||||||| | | ||||||| Sbjct 28097850 ATATGGAAGGGGAAACCATGAGAGTGATTTATGAGCAATGGTTTGTGGAGTATAAAGTTG 28097909 Query 1334 ATGTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGATC 1373 |||| |||||||||| |||||||||||||| || |||| Sbjct 28097910 ATGTTGTCTTTGCTGGTCATGTTCATGCCTATGAACGATC 28097949 Score = 82.4 bits (90), Expect = 2e-13 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1189 GAGCTTACAAGAGTTGATAGGGAGAAAACACCTTGGCTAATTGTTTTGATGCACGTCCCA 1248 ||||| || | |||| || | | |||| || ||||| || ||| | | ||| ||| Sbjct 7757968 GAGCTCACCAAAGTTAATCGAGCTGAAACTCCATGGCTTATAGTTCTTCTTCACTCACCA 7758027 Query 1249 ATATACAACAGTAATGAAGCACATTTCATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAG 1308 || ||||| || | ||||| ||||| || ||||||||| ||| |||||||| Sbjct 7758028 TGGTATAACAGCAACAACTACCATTTTATGGAAGGAGAAAGCATGAGAGTGGCTTTTGAA 7758087 Query 1309 GAGTGGTTTGTCCAACACAAAGTTGATGTAATCTTTGCTGGGCATGTTCATGCCTACGAG 1368 |||||||| || ||||||||| | | || || || |||||||||||||| ||| Sbjct 7758088 TCCTGGTTTGTTGAAAGCAAAGTTGACATTGTGTTAGCCGGTCATGTTCATGCCTATGAG 7758147 Score = 75.2 bits (82), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 868 GGAGATCTTTCTTATGCTGATAGAT-ATCAGTATAATGACGTTGGTGTGAGATGGGATAG 926 || |||||||||||||| ||| ||| | | ||| ||||| || ||||||||| | Sbjct 7756256 GGTGATCTTTCTTATGCAGAT-GATCACCCATATCATGAC---AATGAGAGATGGGACAC 7756311 Query 927 CTGGGGTCGTTTTGTGGAGCGTAGTACCGCTTATCAACCGTGGCTTTGGTCTGCAGGAAA 986 ||||| || ||| | ||| ||| | || ||||| || ||| ||||| |||| || || Sbjct 7756312 ATGGGGGCGGTTTATTGAGAAGAGTGCTGCGTATCAGCCATGGATTTGGACTGCTGGCAA 7756371 Query 987 TCATGAAGTAGATT 1000 ||||||| | |||| Sbjct 7756372 TCATGAACTTGATT 7756385 Score = 68.0 bits (74), Expect = 5e-09 Identities = 61/77 (79%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1495 AGGTTTACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCTAGCTATGGCCACTCT 1554 || || || || ||||| ||| |||||||||||| |||||||| |||| ||| || | Sbjct 7758500 AGTTTCACTGACCCACAACCAAGTTATTCTGCATTCCGGGAAGCAAGCTTTGGGCATGCA 7758559 Query 1555 ACTCTGGATATAAAGAA 1571 ||||| | ||||||||| Sbjct 7758560 ACTCTCGCTATAAAGAA 7758576 Score = 68.0 bits (74), Expect = 5e-09 Identities = 69/90 (77%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 475 GTACACATAACTCAAGGTGATTATGATGGTAAAGCTGTTATCATCTCTTGGGTTACACCT 534 || || ||||||||||| ||| | || || || | ||| || ||||||||||||| || Sbjct 28095878 GTGCATATAACTCAAGGAGATCACGAGGGAAAGGGTGTGATTGTCTCTTGGGTTACTCCA 28095937 Query 535 GATGAACCTGGTTCTAGCCAAGTACATTAC 564 |||||||| ||||| || ||| | |||| Sbjct 28095938 GATGAACCCGGTTCAAGTACAGTGCTTTAC 28095967 Score = 57.2 bits (62), Expect = 8e-06 Identities = 64/86 (74%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 916 AGATGGGATAGCTGGGGTCGTTTTGTGGAGCGTAGTACCGCTTATCAACCGTGGCTTTGG 975 || ||||||| ||||| | || | ||| | | | | ||||||||||| ||| | ||| Sbjct 28096744 AGGTGGGATACATGGGGAAGGTTCATAGAGAGAAATGCTGCTTATCAACCTTGGGTATGG 28096803 Query 976 TCTGCAGGAAATCATGAAGTAGATTA 1001 ||||||| |||||||| | ||||| Sbjct 28096804 ACTGCAGGCAATCATGAGATCGATTA 28096829 Score = 55.4 bits (60), Expect = 3e-05 Identities = 42/50 (84%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 1087 CCTCTTTGGTACGCTGTTAGGCGTGCATCTGCTCATATCATTGTCCTCTC 1136 || |||||||| | ||| |||||||||||| || |||||||||||||| Sbjct 7757740 CCACTTTGGTATTCCATTAAGCGTGCATCTGCACACATCATTGTCCTCTC 7757789 Score = 39.2 bits (42), Expect = 2.2 Identities = 34/40 (85%), Gaps = 2/40 (5%) Strand=Plus/Minus Query 632 ATAAGTCTGGCTTTATTCAT-CACTGCCTTGTCTCTGACC 670 || ||| |||| |||| ||| |||||||||||||||| || Sbjct 8283309 ATGAGTTTGGCCTTAT-CATACACTGCCTTGTCTCTGCCC 8283271 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 2482330 ATAATATAAAATACTATTAGAAAATTGAAA 2482359 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 2482945 ATAATATAAAATACTATTAGAAAATTGAAA 2482974 Score = 37.4 bits (40), Expect = 7.8 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 1735 TTCACTAAGTCTGCCTCATGCTTTGTATCAAAGTGTG 1771 |||| || |||||||||||| ||| |||||| |||| Sbjct 5848771 TTCAATAGGTCTGCCTCATGTTTTACATCAAA-TGTG 5848736 Score = 37.4 bits (40), Expect = 7.8 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 1752 ATGCTTTGTATCAAAGTGTGTGAGGATATTCTTTTAA 1788 ||| |||| ||||||||||| ||||| || |||||| Sbjct 8783994 ATGGTTTGATTCAAAGTGTGTTAGGAT-TTTTTTTAA 8783959 Score = 37.4 bits (40), Expect = 7.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1255 AACAGTAATGAAGCACATTTCATGG 1279 |||| |||| ||||||||||||||| Sbjct 19655458 AACAATAATAAAGCACATTTCATGG 19655482 Score = 37.4 bits (40), Expect = 7.8 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 51 GTCCAAACTTTTTCTTGACACCAAACT 77 ||| ||| ||||||||||||||||||| Sbjct 19771559 GTCTAAA-TTTTTCTTGACACCAAACT 19771534 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 100 bits (110), Expect = 8e-19 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 1156 AAGTATACCCCGCAATGGCAC-TGGCTTAGTGAAGAGCTTACAAGAGTTGATAGGGAGAA 1214 || ||||| || |||| ||| ||||| || || || | | |||| |||||| | Sbjct 24737159 AAATATACACCTCAATA-CACATGGCTCGAAGAGGAACTACCGAAAGTTAATAGGGCCGA 24737217 Query 1215 AACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGTAATGAAGCACATTT 1274 ||||||||||| |||||| | | ||| ||| || || || || | |||| Sbjct 24737218 GACACCTTGGCTGATTGTTCTCACGCATTCCCCTTGGTATAATAGCTATAACTATCATTA 24737277 Query 1275 CATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTGA 1334 |||||||| |||| |||| ||| | ||||||| |||||||| | | |||||||| Sbjct 24737278 TATGGAGGGGGAAACCATGAGAGTAATGTTTGAGGCCTGGTTTGTGAAGTATAAAGTTGA 24737337 Query 1335 TGTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGATC 1373 ||| | |||||||| ||||||||||| || ||| |||| Sbjct 24737338 TGTGGTATTTGCTGGTCATGTTCATGCTTATGAGCGATC 24737376 Score = 82.4 bits (90), Expect = 2e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1501 ACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCTAGCTATGGCCACTCTACTCTG 1560 || |||||||||||||| || || || | ||| || || |||| ||| || | ||| | Sbjct 24737954 ACCGAACCACAGCCAGAGTACTCAGCTTATCGTGAGGCAAGCTTTGGTCATGCCACTTTT 24738013 Query 1561 GATATAAAGAACCGAACACACGCTATATACCACTGGAACCGCAATGATGATGG 1613 ||||| ||||||||||| || ||| ||| ||| |||||||| ||||||| Sbjct 24738014 GATATCAAGAACCGAACCCATGCTTACTACAGTTGGCACCGCAATCATGATGG 24738066 Score = 44.6 bits (48), Expect = 0.052 Identities = 52/68 (76%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 412 GTTGATATACCACTTGATCATCATGT-TTTCAAAGTCCCAAAAGGATATAATGCACCACA 470 || ||||| || || ||| |||| ||||||| |||| || ||||||||||| || Sbjct 24734622 GTGGATATGCCTCTGGATAGCGATGTCTTTCAAA-TCCCTCCTGGCTATAATGCACCTCA 24734680 Query 471 ACAAGTAC 478 |||||||| Sbjct 24734681 ACAAGTAC 24734688 Score = 41.0 bits (44), Expect = 0.64 Identities = 33/40 (83%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 2083 AGTTCACATCGACTCTTGTATGGTTTGGGTTTGTTCAATC 2122 |||| ||||| ||||| ||| ||||| ||||||||||| Sbjct 8552767 AGTTGACATCCTCTCTTCTATCTTTTGGATTTGTTCAATC 8552728 Score = 39.2 bits (42), Expect = 2.2 Identities = 41/54 (76%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 1431 AGATAAGTCAGCGCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAAGAAGG 1484 |||| | ||||||||||| || || || |||| || ||||| || | ||||| Sbjct 24737784 AGATCAATCAGCGCCTGTATACATAACCATTGGTGATGGAGGGAACCTCGAAGG 24737837 Score = 37.4 bits (40), Expect = 7.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1913 TTATGGATTTGGTGAATAATGTATT 1937 ||||||||||| ||||||| ||||| Sbjct 3111218 TTATGGATTTGATGAATAAGGTATT 3111242 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 84.2 bits (92), Expect = 6e-14 Identities = 106/145 (73%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 856 GTTTTATTTCTTGGAGATCTTTCTTATGCTGATAGATATCAGTATAATGACGTTGGTGTG 915 || || ||| |||| ||||||||||| || || | |||| |||| ||| || | Sbjct 5533360 GTGTTGTTTGTTGGGGATCTTTCTTACGCAGACCGGTATCCAAATAACGACAATGCT--- 5533304 Query 916 AGATGGGATAGCTGGGGTCGTTTTGTGGAGCGTAGTACCGCTTATCAACCGTGGCTTTGG 975 |||||||||| ||||| | || || ||| | ||| ||||||||||| ||| | ||| Sbjct 5533303 AGATGGGATACATGGGGAAGGTTCGTTGAGAGAAGTGTTGCTTATCAACCATGGATATGG 5533244 Query 976 TCTGCAGGAAATCATGAAGTAGATT 1000 ||||||| ||||| || |||||| Sbjct 5533243 ACTGCAGGGAATCACGAGTTAGATT 5533219 Score = 82.4 bits (90), Expect = 2e-13 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 1156 AAGTATACCCCGCAATGGCACTGGCTTAGTGAAGAGCTTACAAGAGTTGATAGGGAGAAA 1215 || || ||||| |||| || |||||| | || | ||| |||| | ||| | Sbjct 5532707 AAATACACCCCTCAATACCAATGGCTTGAACAGGAATTGCCAAAAGTTAACAGGACTGAG 5532648 Query 1216 ACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGTAATGAAGCACATTTC 1275 ||||||||| | |||||| | ||||| ||| || || || | | |||| Sbjct 5532647 ACACCTTGGTTGATTGTTCTTATGCATTCCCCCTGGTATAATAGCTACAACTATCATTAT 5532588 Query 1276 ATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTGAT 1335 |||||||| |||| |||| ||| | | ||||| |||||||| | ||||||||||| Sbjct 5532587 ATGGAGGGGGAAACCATGAGAGTAATGTATGAGGGATGGTTTGTGAAGTACAAAGTTGAT 5532528 Query 1336 GTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGATC 1373 || | ||||| || ||||||||||| || || |||| Sbjct 5532527 GTGGTATTTGCAGGTCATGTTCATGCTTATGAACGATC 5532490 Score = 55.4 bits (60), Expect = 3e-05 Identities = 80/113 (71%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1501 ACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCTAGCTATGGCCACTCTACTCTG 1560 || ||||||||||| | ||||| || | || || || || | ||| || | || | Sbjct 5531947 ACAGAACCACAGCCTGCATATTCAGCTTACCGTGAGGCAAGTTTTGGTCATGCCACCTTT 5531888 Query 1561 GATATAAAGAACCGAACACACGCTATATACCACTGGAACCGCAATGATGATGG 1613 ||||| ||||||||||| || ||| ||| ||| |||| ||| | ||||| Sbjct 5531887 GATATCAAGAACCGAACCCATGCTTACTACAGTTGGCACCGTAATCAAGATGG 5531835 Score = 41.0 bits (44), Expect = 0.64 Identities = 33/40 (83%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 2083 AGTTCACATCGACTCTTGTATGGTTTGGGTTTGTTCAATC 2122 |||| ||||| ||||| ||| ||||| ||||||||||| Sbjct 36086169 AGTTGACATCCTCTCTTCTATCTTTTGGATTTGTTCAATC 36086208 Score = 37.4 bits (40), Expect = 7.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1761 ATCAAAGTGTGTGAGGATATTCTTTTAA 1788 ||||||||| ||| ||||||||||||| Sbjct 4722064 ATCAAAGTGGATGAAGATATTCTTTTAA 4722091 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 10467638 ATAATATAAAATACTATTAGAAAATTGAAA 10467667 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 10467990 ATAATATAAAATACTATTAGAAAATTGAAA 10468019 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 78.8 bits (86), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 847 GCTCAGGCTGTTTTATTTCTTGGAGATCTTTCTTATGCTGATAGAT-ATCAGTATAATGA 905 || ||| || | || ||| | || |||||||||||||||||| ||| | | | |||| Sbjct 19373509 GCGCAGACTATGTTGTTTGTAGGTGATCTTTCTTATGCTGAT-GATCACCCAAACCATGA 19373567 Query 906 CGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTTGTGGAGCGTAGTACCGCTTATCAACC 965 | || ||||||||| | ||||| || ||| | ||| ||| | || ||||| || Sbjct 19373568 C---AATGAGAGATGGGACACATGGGGCCGCTTTATTGAGAAGAGTGCTGCGTATCAGCC 19373624 Query 966 GTGGCTTTGGTCTGCAGGAAATCATGAAGTAGATTA 1001 ||| ||||| |||| || ||||||||| | ||||| Sbjct 19373625 ATGGATTTGGACTGCTGGCAATCATGAACTTGATTA 19373660 Score = 77.0 bits (84), Expect = 9e-12 Identities = 110/155 (71%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 1214 AAACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGTAATGAAGCACATT 1273 |||| || ||||| || ||| | | ||| ||| || ||||| || | |||| Sbjct 19374247 AAACTCCATGGCTTATAGTTCTTCTTCACTCACCATGGTATAACAGCAACAACTACCATT 19374306 Query 1274 TCATGGAGGGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTG 1333 ||||| || ||||||||| ||| ||||||| |||||||| || |||||||| Sbjct 19374307 ATATGGAAGGAGAAAGCATGAGAGTGACTTTTGAATCCTGGTTTGTTGAAAGCAAAGTTG 19374366 Query 1334 ATGTAATCTTTGCTGGGCATGTTCATGCCTACGAG 1368 | | | |||||||| |||||||||||||| ||| Sbjct 19374367 ACATTGTTTTTGCTGGTCATGTTCATGCCTATGAG 19374401 Score = 50.0 bits (54), Expect = 0.001 Identities = 41/50 (82%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 1087 CCTCTTTGGTACGCTGTTAGGCGTGCATCTGCTCATATCATTGTCCTCTC 1136 || |||||||| | | | |||||||||||| || |||||||||||||| Sbjct 19374026 CCACTTTGGTATTCCATCAAGCGTGCATCTGCACACATCATTGTCCTCTC 19374075 Score = 41.0 bits (44), Expect = 0.64 Identities = 26/27 (96%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 58 CTTTTTCTTGACACCAAACTATTTCTA 84 ||||||||||||||||||| ||||||| Sbjct 1671119 CTTTTTCTTGACACCAAAC-ATTTCTA 1671144 Score = 39.2 bits (42), Expect = 2.2 Identities = 25/26 (96%), Gaps = 1/26 (4%) Strand=Plus/Plus Query 59 TTTTTCTTGACACCAAACTATTTCTA 84 |||||||||||||||||| ||||||| Sbjct 1649368 TTTTTCTTGACACCAAAC-ATTTCTA 1649392 Score = 39.2 bits (42), Expect = 2.2 Identities = 25/26 (96%), Gaps = 1/26 (4%) Strand=Plus/Plus Query 59 TTTTTCTTGACACCAAACTATTTCTA 84 |||||||||||||||||| ||||||| Sbjct 1659604 TTTTTCTTGACACCAAAC-ATTTCTA 1659628 Score = 39.2 bits (42), Expect = 2.2 Identities = 25/26 (96%), Gaps = 1/26 (4%) Strand=Plus/Plus Query 59 TTTTTCTTGACACCAAACTATTTCTA 84 |||||||||||||||||| ||||||| Sbjct 1663386 TTTTTCTTGACACCAAAC-ATTTCTA 1663410 Score = 37.4 bits (40), Expect = 7.8 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 264 TCATCTCTCAGGTaaaaaaa 283 |||||||||||||||||||| Sbjct 7063329 TCATCTCTCAGGTAAAAAAA 7063348 Score = 37.4 bits (40), Expect = 7.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 607 TACCATAACTACACGTTTTACAAGT 631 |||||||| ||||||||||||| || Sbjct 18098978 TACCATAATTACACGTTTTACATGT 18098954 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 57.2 bits (62), Expect = 8e-06 Identities = 124/180 (69%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 1201 GTTGATAGGGAGAAAACACCTTGGCTAATTGTTTTGATGCACGTCCCAATATACAACAGT 1260 ||||| ||| ||||||| || ||| | |||| | |||| | ||| || |||| | Sbjct 1111796 GTTGACAGGAAGAAAACGCCATGGATCTTTGTGCTCTTGCATGCCCCCTGGTATAACACT 1111737 Query 1261 AATGAAGCACATTTCATGGAG--GGTGAAAGCATGCGAGCAGCTTTTGAGGAGTGGTTTG 1318 ||| ||||||| || || | || ||||||||| || |||| | || |||| | | | Sbjct 1111736 AATACAGCACAT--CAAGGTGAAGGAGAAAGCATGAGAAAAGCTATGGAAGAGTTGCT-G 1111680 Query 1319 TCCAACACAAAGTT-GATGTAATCTTTGCTGGGCATGTTCATGCCTACGAGAGA-TCGTA 1376 | || || | | || || | ||||| || ||||||||||| || || || ||||| Sbjct 1111679 TATAAGGCACGGGTCGACGTGGTTTTTGCAGGCCATGTTCATGCATATGAACGATTCGTA 1111620 Score = 41.0 bits (44), Expect = 0.64 Identities = 33/40 (83%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 2083 AGTTCACATCGACTCTTGTATGGTTTGGGTTTGTTCAATC 2122 |||| ||||| ||||| ||| ||||| ||||||||||| Sbjct 27857185 AGTTGACATCCTCTCTTCTATCTTTTGGATTTGTTCAATC 27857224 Score = 39.2 bits (42), Expect = 2.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 478 CACATAACTCAAGGTGATTATGATGG 503 |||||||||||||||||| |||| || Sbjct 11862348 CACATAACTCAAGGTGATGATGAAGG 11862323 Score = 37.4 bits (40), Expect = 7.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 91 TCAAATTAGTTAAAAGGTTACGTTATGC 118 ||||||||||||||| ||| ||||||| Sbjct 8758837 TCAAATTAGTTAAAAATTTATGTTATGC 8758810 Score = 37.4 bits (40), Expect = 7.8 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1760 TATCAAAGTGTGTGAGGATATTCTTTTAAC 1789 |||||||||||||| ||||| | ||||||| Sbjct 10393678 TATCAAAGTGTGTGTGGATAGT-TTTTAAC 10393706 Score = 37.4 bits (40), Expect = 7.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 83 TAAGAATATCAAATTAGTTAAAAGG 107 |||| ||||||||||||||||| || Sbjct 27827233 TAAGTATATCAAATTAGTTAAATGG 27827209 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 53.6 bits (58), Expect = 1e-04 Identities = 35/39 (90%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1444 CCTGTTTATATCACAGTTGGAGACGGAGGAAATCAAGAA 1482 ||||||||||||||||||||||| || || |||| |||| Sbjct 10563693 CCTGTTTATATCACAGTTGGAGATGGGGGTAATCGAGAA 10563731 Score = 37.4 bits (40), Expect = 7.8 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 1201 GTTGATAGGGAGAAAACACCTTGGCTAATTGTTTT 1235 |||| || | ||||| ||| ||| ||||||||||| Sbjct 17126031 GTTGCTATGAAGAAAGCACATTGCCTAATTGTTTT 17125997 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 32701785 ATAATATAAAATACTATTAGAAAATTGAAA 32701814 >Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 Length=1158772 Score = 44.6 bits (48), Expect = 0.052 Identities = 33/39 (85%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1444 CCTGTTTATATCACAGTTGGAGACGGAGGAAATCAAGAA 1482 || || ||||||||||||||||| || || |||| |||| Sbjct 670713 CCGGTATATATCACAGTTGGAGATGGGGGTAATCGAGAA 670751 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 42.8 bits (46), Expect = 0.18 Identities = 29/33 (88%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1794 AACTTATTACTTAATTTGATGTTAAATCTCTTT 1826 |||||||||||| |||| || ||||| |||||| Sbjct 6905800 AACTTATTACTTTATTTTATTTTAAAACTCTTT 6905768 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 41.0 bits (44), Expect = 0.64 Identities = 33/40 (83%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 2083 AGTTCACATCGACTCTTGTATGGTTTGGGTTTGTTCAATC 2122 |||| ||||| ||||| ||| ||||| ||||||||||| Sbjct 27214109 AGTTGACATCCTCTCTTCTATCTTTTGGATTTGTTCAATC 27214148 Score = 37.4 bits (40), Expect = 7.8 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2207 AAGATAGAGGCTTTGTGGAA 2226 |||||||||||||||||||| Sbjct 13192984 AAGATAGAGGCTTTGTGGAA 13192965 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 17016106 ATAATATAAAATACTATTAGAAAATTGAAA 17016077 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 17016939 ATAATATAAAATACTATTAGAAAATTGAAA 17016910 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 41.0 bits (44), Expect = 0.64 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 1913 TTATGGATTTGGTGAATAATGTATTCC 1939 || |||||||| ||||||||||||||| Sbjct 10794845 TTTTGGATTTGATGAATAATGTATTCC 10794871 Score = 37.4 bits (40), Expect = 7.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 785 TAGGCGATATGGGTCAGACATTCAACTC 812 || || ||||||||||||||||||| || Sbjct 3775171 TAAGCTATATGGGTCAGACATTCAAATC 3775198 Score = 37.4 bits (40), Expect = 7.8 Identities = 31/36 (86%), Gaps = 4/36 (11%) Strand=Plus/Minus Query 2469 TCTTATGCTGCATGTCCCGG---TACA-TCACCATC 2500 ||||||| |||||||||||| |||| |||||||| Sbjct 8140896 TCTTATGTTGCATGTCCCGGCATTACAGTCACCATC 8140861 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 41.0 bits (44), Expect = 0.64 Identities = 34/42 (81%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 1326 CAAAGTTGATGTAATCTTTGCTGGGCATGTTCATGCCTACGA 1367 ||| || ||| || | ||||||| ||||||||||| ||||| Sbjct 36165907 CAATGTGGATATAGTACTTGCTGGTCATGTTCATGCTTACGA 36165866 Score = 39.2 bits (42), Expect = 2.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1604 ATGATGATGGGAAGAAAGTGG 1624 ||||||||||||||||||||| Sbjct 10920862 ATGATGATGGGAAGAAAGTGG 10920882 Score = 39.2 bits (42), Expect = 2.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1604 ATGATGATGGGAAGAAAGTGG 1624 ||||||||||||||||||||| Sbjct 11067104 ATGATGATGGGAAGAAAGTGG 11067124 Score = 37.4 bits (40), Expect = 7.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1800 TTACTTAATTTGATGTTAAATCTCT 1824 |||||||||||| |||||| ||||| Sbjct 794571 TTACTTAATTTGTTGTTAATTCTCT 794595 Score = 37.4 bits (40), Expect = 7.8 Identities = 40/49 (82%), Gaps = 3/49 (6%) Strand=Plus/Plus Query 2103 TGGT-TTGGGTTTGTTCAAT-CATATGTCGATTGTTCGCTCTTCACTTT 2149 |||| ||||||||||| ||| |||| || |||| ||| || |||| ||| Sbjct 25265772 TGGTCTTGGGTTTGTTGAATCCATA-GTTGATTATTCCCTTTTCATTTT 25265819 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 2.2 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 104 AAGGTTACGTTATGCACTTTAATGCT 129 ||||| || ||||||||||||||||| Sbjct 14111787 AAGGTGACTTTATGCACTTTAATGCT 14111762 Score = 37.4 bits (40), Expect = 7.8 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1605 TGATGATGGGAAGAAAGTGGCAACGGATGAATTTG 1639 ||||||||||||||| | || ||| ||||| ||| Sbjct 9009168 TGATGATGGGAAGAATGAGGAAACATATGAAGTTG 9009202 Score = 37.4 bits (40), Expect = 7.8 Identities = 35/45 (78%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 431 ATCATGTTTTCAAAGTCCCAAAAGGATATAATGCACCACAACAAG 475 |||||||||||||| || |||||| | | ||| || |||||| Sbjct 13040876 ATCATGTTTTCAAACTCACAAAAGTACAATATGGACTCAAACAAG 13040832 Score = 37.4 bits (40), Expect = 7.8 Identities = 35/45 (78%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 431 ATCATGTTTTCAAAGTCCCAAAAGGATATAATGCACCACAACAAG 475 |||||||||||||| || |||||| | | ||| || |||||| Sbjct 13087818 ATCATGTTTTCAAACTCACAAAAGTACAATATGGACTCAAACAAG 13087774 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 39.2 bits (42), Expect = 2.2 Identities = 34/41 (83%), Gaps = 1/41 (2%) Strand=Plus/Plus Query 1995 TGTTTATTACATGGAGATTTGTCCAAAGAAATATAATAAAA 2035 |||| ||||||| ||||| | | ||||||||||| ||||| Sbjct 6798312 TGTTCATTACATAAAGATTAGAC-AAAGAAATATATTAAAA 6798351 Score = 37.4 bits (40), Expect = 7.8 Identities = 36/44 (82%), Gaps = 3/44 (7%) Strand=Plus/Minus Query 1787 AACTCGGAACTTATTA--CTTAATTTGATGTTAAATCTCTTTCC 1828 ||||| || |||||| |||| ||| | ||||||||||||||| Sbjct 13119022 AACTCATAAATTATTAAACTTATTTTAA-GTTAAATCTCTTTCC 13118980 Score = 37.4 bits (40), Expect = 7.8 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 1325 ACAAAGTTGATGTA-ATCTTTGCTGGGCATGTTCATG 1360 ||||||| | |||| || || |||| ||||||||||| Sbjct 33664779 ACAAAGTAGTTGTATATATTCGCTGCGCATGTTCATG 33664815 Score = 37.4 bits (40), Expect = 7.8 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 2011 ATTTGTCCAAAGAAATATAATAAAACTC 2038 |||| |||||| || ||||||||||||| Sbjct 38941548 ATTTTTCCAAATAACTATAATAAAACTC 38941521 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 48396312 ATAATATAAAATACTATTAGAAAATTGAAA 48396283 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2006 TGGAGATTTGTCCAAAGAAATATAATAAAA 2035 |||| | ||||||||||||||| || |||| Sbjct 6149912 TGGAAACTTGTCCAAAGAAATAAAAGAAAA 6149941 Score = 37.4 bits (40), Expect = 7.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2012 TTTGTCCAAAGAAATATAATAAAAC 2036 ||||| ||||||||||| ||||||| Sbjct 10098284 TTTGTACAAAGAAATATCATAAAAC 10098308 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 7.8 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Plus Query 1678 AGAAAGCTTAAGAAGCATTATATCA 1702 |||||||| |||||||||||||||| Sbjct 1984138 AGAAAGCT-AAGAAGCATTATATCA 1984161 Score = 37.4 bits (40), Expect = 7.8 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1805 TAATTTGATGTTAAATCTCTTTCCC 1829 |||||||||| | |||||||||||| Sbjct 8467147 TAATTTGATGATCAATCTCTTTCCC 8467123 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 19350233 ATAATATAAAATACTATTAGAAAATTGAAA 19350262 Score = 37.4 bits (40), Expect = 7.8 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 677 ATGATACAAAATACTATTACAAGATTGAAA 706 || ||| |||||||||||| || ||||||| Sbjct 29443201 ATAATATAAAATACTATTAAAAAATTGAAA 29443230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1363942131743 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2