BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1474 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr6D 183 5e-44 lcl|Jr2D 161 2e-37 lcl|Jr2S 159 5e-37 lcl|Jr3S 53.6 6e-05 lcl|Jr5S 48.2 0.002 lcl|Jr1D 41.0 0.36 lcl|Jr7S 39.2 1.3 lcl|Jr6S 39.2 1.3 lcl|Jr5D 39.2 1.3 lcl|Jr4D 39.2 1.3 lcl|Jr8S 37.4 4.4 lcl|Jr8D 37.4 4.4 lcl|Jr4S 37.4 4.4 lcl|Jr3D 37.4 4.4 lcl|Jr1S 37.4 4.4 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 183 bits (202), Expect = 5e-44 Identities = 223/304 (73%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 487 TCAAAGAGCAAGGGCTTAAGGGTTTCACCAGAGGCTGGTCACCAACGCTTCTTGGTTACA 546 |||| ||||| || ||| |||||| || || ||| || || |||| ||||||| Sbjct 333247 TCAAGGAGCAGGGAGTTAGAGGTTTCTTCAAGGGTTGGGTGCCCACTTTTCTAGGTTACA 333306 Query 547 GTGCCCAAGGAGCTTTTAAATACGGTCTCTATGAGTACGCCAAGAAATACTACTCAGACA 606 |||| || || || | ||||| || || || |||| ||||| |||||||| |||| Sbjct 333307 GTGCGCAGGGCGCCTGCAAATATGGACTTTACGAGTTTTTTAAGAAGTACTACTCGGACA 333366 Query 607 TTGTTGGACCAGAATACGCAGCTAAATACAAGACCTTGATTTACCTCGCTGGCTCAGCCT 666 ||| || || || || ||| | || ||||| |||||||| || || ||||| || || | Sbjct 333367 TTGCCGGGCCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCTT 333426 Query 667 CTGCAGAAATCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCAAAGTCAGGGTCC 726 |||| ||| | | |||||||| || || || || ||||| ||||| ||||| | |||| Sbjct 333427 CTGCCGAAGTGATTGCTGATGTTGCCCTCTGCCCCATGGAGGCTGTGAAAGTTCGTGTCC 333486 Query 727 AGACTCAGCCTGGTTTCGCCCGCGGTTTATCTGATGGTTTACCAAAGATCATCAAATCCG 786 | ||||||||||| || ||||| ||||| || || || | || ||| ||||||| | | Sbjct 333487 AAACTCAGCCTGGGTTTGCCCGAGGTTTGTCAGACGGACTTCCCAAGTTCATCAAGACTG 333546 Query 787 AAGG 790 |||| Sbjct 333547 AAGG 333550 Score = 125 bits (138), Expect = 1e-26 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 838 TTCCATATACGATGATGAAATTTGCTACTTTTGAAAACACTGTGGAGCTCATATACAAGA 897 || || |||| ||||||||||| || | || || | | ||||||| | | |||||| Sbjct 334539 TTGCAGATACCATGATGAAATTCGCATCCTTCGAGACTATTGTGGAGATGCTGTACAAGC 334598 Query 898 AAGTGATGCCTACCCCAAAAGAAGAGTGCTCAAAGCCAGTTCAGCTCGGAGTTAGCTTTG 957 | | || || ||||||||||| ||||| || | |||| || || || ||||||| Sbjct 334599 ACGCCATCCCAACCCCAAAAGACCAGTGCAGCAAATCTTTTCAACTTGGGGTGAGCTTTG 334658 Query 958 CAGGTGGATACATTGCTGGAATATTCTGCGCCATCATCTCACATCCTGCAGATAATTTGG 1017 | |||||||| | ||||| ||||||| || || | ||||| || || || || ||| Sbjct 334659 CTGGTGGATATGTGGCTGGTGTATTCTGTGCTTTCGTATCACACCCAGCTGACAACCTGG 334718 Query 1018 TGTCTTTCCTCAATAACTCTAAAGGAGCAACCGTTGCTGATG 1059 ||||||||||||| || | || || || || |||| ||||| Sbjct 334719 TGTCTTTCCTCAACAATGCCAAGGGTGCTACTGTTGGTGATG 334760 Score = 107 bits (118), Expect = 3e-21 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1071 CTAGGGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTCATGATAGGAACA 1130 || ||||| |||||| | || |||||||||||||||||||| || ||||||| ||||| Sbjct 334869 CTCGGGTTGTGGGGTCTTTTTACCCGTGGCCTTCCTCTTCGTATAGTCATGATTGGAACC 334928 Query 1131 CTCACTGGAGCGCAGTGGGTTATCTATGATGCTGTCAAAGTTTTAGCTGGATTG 1184 || || ||||| || ||| | || ||||||| | |||||||||| | |||| || Sbjct 334929 CTTACGGGAGCCCAATGGATGATTTATGATGGTTTCAAAGTTTTTGTTGGACTG 334982 Score = 105 bits (116), Expect = 1e-20 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 312 CCGAATGAAAAAGTGGAAATGTACTCGCCGGCGTATTTCGCGGCGTGTACGGTCGCCGGG 371 ||||| || || | || |||||||||||||| | | ||| || || |||| || |||| Sbjct 331270 CCGAAGGAGAAGATCGAGATGTACTCGCCGGCTTTCTACGCCGCATGCACGGCCGGCGGG 331329 Query 372 ATGCTGAGCTGCGGTATCACCCACACGGCGATTACGCCACTTGATGTCATCAAATGCAAC 431 | || ||||| || ||||||||||||| |||| || ||||||||| |||| |||||| Sbjct 331330 ACCCTCAGCTGTGGCCTCACCCACACGGCCCTTACTCCTCTTGATGTCGTCAAGTGCAAC 331389 Query 432 ATGCAG 437 |||||| Sbjct 331390 ATGCAG 331395 Score = 62.6 bits (68), Expect = 1e-07 Identities = 39/42 (93%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 805 ACAAAGGACTTGTTCCTCTCTGGGGACGCCAGATTCCATATA 846 ||||||||||||||||||| |||||||| |||||||||| || Sbjct 333659 ACAAAGGACTTGTTCCTCTTTGGGGACGTCAGATTCCATGTA 333700 Score = 39.2 bits (42), Expect = 1.3 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1311 TTTTCTTAATTATTTTGTTTC 1331 ||||||||||||||||||||| Sbjct 7340990 TTTTCTTAATTATTTTGTTTC 7341010 Score = 37.4 bits (40), Expect = 4.4 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 1302 ACCAGTTATTTTTCTT-AATTATTTTG 1327 |||| ||||||||||| |||||||||| Sbjct 9557484 ACCATTTATTTTTCTTAAATTATTTTG 9557458 Score = 37.4 bits (40), Expect = 4.4 Identities = 33/40 (83%), Gaps = 1/40 (3%) Strand=Plus/Minus Query 1307 TTATTTTTCTTAATTATTTTGTTTCTG-TTGTCTAGTATA 1345 ||||||||||| ||| ||||||| || |||||| | ||| Sbjct 20035351 TTATTTTTCTTTATTTTTTTGTTGTTGTTTGTCTTGCATA 20035312 Score = 37.4 bits (40), Expect = 4.4 Identities = 38/49 (78%), Gaps = 8/49 (16%) Strand=Plus/Plus Query 1293 AACAGAACTACCAGTTATTTTTCTTAATTA-------TTTTGTTTCTGT 1334 ||||||| | | || ||||||||||||||| |||||||||||| Sbjct 26515204 AACAGAATTTC-AGATATTTTTCTTAATTATGAGCATTTTTGTTTCTGT 26515251 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1311 TTTTCTTAATTATTTTGTTTCTGTT 1335 ||||||||||| |||||||||| || Sbjct 27162522 TTTTCTTAATTGTTTTGTTTCTTTT 27162546 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 161 bits (178), Expect = 2e-37 Identities = 214/296 (72%), Gaps = 1/296 (0%) Strand=Plus/Plus Query 497 AGGGCTTAAG-GGTTTCACCAGAGGCTGGTCACCAACGCTTCTTGGTTACAGTGCCCAAG 555 ||||| | || || ||| ||| || ||| |||||| | ||||| |||||||| || | Sbjct 316936 AGGGCGTCAGAGGCTTCTTCAGGGGTTGGGTACCAACCTTGCTTGGCTACAGTGCTCAGG 316995 Query 556 GAGCTTTTAAATACGGTCTCTATGAGTACGCCAAGAAATACTACTCAGACATTGTTGGAC 615 | |||| || | || |||| || | | ||||| |||||||| ||||||| ||||| Sbjct 316996 GTGCTTGCAAGTTTGGATTCTACGAATTCTTTAAGAAGTACTACTCTGACATTGCTGGAC 317055 Query 616 CAGAATACGCAGCTAAATACAAGACCTTGATTTACCTCGCTGGCTCAGCCTCTGCAGAAA 675 | || || ||| | || |||||||||||||| || || ||||| || || ||||| || Sbjct 317056 CTGAGTATGCATCCAAGTACAAGACCTTGATCTATCTTGCTGGTTCTGCATCTGCTGAGG 317115 Query 676 TCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCAAAGTCAGGGTCCAGACTCAGC 735 || | || ||| | || ||||| || | || || || || ||| | || || || |||| Sbjct 317116 TCATTGCAGATATTGCACTTTGCCCTTTCGAGGCAGTGAAGGTCCGAGTTCAAACACAGC 317175 Query 736 CTGGTTTCGCCCGCGGTTTATCTGATGGTTTACCAAAGATCATCAAATCCGAAGGC 791 ||||||| || | ||| | |||||||| | || ||| | | ||||| |||||| Sbjct 317176 CTGGTTTTGCTAGAGGTCTTTCTGATGGGCTTCCTAAGTTTGTTAAATCTGAAGGC 317231 Score = 123 bits (136), Expect = 4e-26 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 838 TTCCATATACGATGATGAAATTTGCTACTTTTGAAAACACTGTGGAGCTCATATACAAGA 897 || || |||| |||||||| ||||| ||||||| || ||||||| || || ||| Sbjct 318614 TTGCAGATACAATGATGAAGTTTGCATCTTTTGAGGCCATTGTGGAGAATATTTATAAGT 318673 Query 898 AAGTGATGCCTACCCCAAAAGAAGAGTGC--TCAAAGCCAGTTCAGCTCGGAGTTAGCTT 955 | | || || || || || || |||| | |||| | | ||||| || || || || Sbjct 318674 ATGCCATCCCCACTCCGAAGGACCAGTGTAGTAAAAGTCTG--CAGCTGGGTGTGAGTTT 318731 Query 956 TGCAGGTGGATACATTGCTGGAATATTCTGCGCCATCATCTCACATCCTGCAGATAATTT 1015 ||| |||||||| | ||||| |||||||| || || | || |||||||| || ||| | Sbjct 318732 TGCTGGTGGATATGTGGCTGGTATATTCTGTGCTATTGTGTCTCATCCTGCTGACAATCT 318791 Query 1016 GGTGTCTTTCCTCAATAACTCTAAAGGAGCAACCGTTGCTGATG 1059 || ||||||||||| || | ||||| ||||| |||| ||||| Sbjct 318792 TGTCTCTTTCCTCAACAATGCCAAAGGGGCAACTGTTGGTGATG 318835 Score = 53.6 bits (58), Expect = 6e-05 Identities = 37/42 (88%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 805 ACAAAGGACTTGTTCCTCTCTGGGGACGCCAGATTCCATATA 846 |||| || || ||||||||||||||||| |||||||||| || Sbjct 317336 ACAAGGGTCTAGTTCCTCTCTGGGGACGTCAGATTCCATGTA 317377 Score = 41.0 bits (44), Expect = 0.36 Identities = 41/51 (80%), Gaps = 3/51 (6%) Strand=Plus/Minus Query 1302 ACCAGTTATTTTTCTT-AATTATTTTG--TTTCTGTTGTCTAGTATAGAAC 1349 |||| ||||||||||| || ||||||| ||| | |||| | || |||||| Sbjct 39812334 ACCATTTATTTTTCTTAAACTATTTTGGCTTTATCTTGTTTTGTGTAGAAC 39812284 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 7 ATGACATTTCATAACCAAAAACTCA 31 ||||||||||| || |||||||||| Sbjct 28405063 ATGACATTTCAGAAACAAAAACTCA 28405039 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1305 AGTTATTTTTCTTAATTATTTTGTT 1329 ||||||||||||| ||||| ||||| Sbjct 33506630 AGTTATTTTTCTTGATTATGTTGTT 33506654 Score = 37.4 bits (40), Expect = 4.4 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 402 ATTACGCCACTTGATGTCATCAAATGCA 429 ||| | ||||||| |||||||||||||| Sbjct 43094263 ATTGCTCCACTTGTTGTCATCAAATGCA 43094236 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 159 bits (176), Expect = 5e-37 Identities = 220/305 (72%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 489 AAAGAGCAAGGGCTTAAG-GGTTTCACCAGAGGCTGGTCACCAACGCTTCTTGGTTACAG 547 || ||||| |||| | || || ||| ||| || ||| ||||| | ||||||||||| Sbjct 234635 AAGGAGCA-GGGCATCAGAGGCTTCTTCAGGGGTTGGGTGCCAACCTTGCTTGGTTACAG 234693 Query 548 TGCCCAAGGAGCTTTTAAATACGGTCTCTATGAGTACGCCAAGAAATACTACTCAGACAT 607 ||| || || ||| || | || ||||||| | | |||||||||||||| ||||| Sbjct 234694 TGCTCAGGGTGCTGGCAAGTTTGGATTCTATGAATTCTTTAAGAAATACTACTCTGACAT 234753 Query 608 TGTTGGACCAGAATACGCAGCTAAATACAAGACCTTGATTTACCTCGCTGGCTCAGCCTC 667 || |||||| || || ||| | || ||||| |||||||| || || ||||| || || || Sbjct 234754 TGCTGGACCTGAGTATGCAACCAAGTACAAAACCTTGATCTATCTTGCTGGTTCTGCATC 234813 Query 668 TGCAGAAATCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCAAAGTCAGGGTCCA 727 || || || | || || | |||||||| || | || || || || ||| | || || Sbjct 234814 CGCTGAGGTCATTGCGGACATTGCTCTTTGCCCTTTTGAGGCAGTGAAGGTCCGAGTTCA 234873 Query 728 GACTCAGCCTGGTTTCGCCCGCGGTTTATCTGATGGTTTACCAAAGATCATCAAATCCGA 787 |||||||||||||| ||| | ||| | || ||||| | || ||| | | || || || Sbjct 234874 AACTCAGCCTGGTTTTGCCAGAGGTCTTTCAGATGGGCTTCCTAAGTTTGTTAAGTCGGA 234933 Query 788 AGGCT 792 ||||| Sbjct 234934 AGGCT 234938 Score = 114 bits (126), Expect = 2e-23 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1059 GCAGTAAAGAGGCTAGGGTTATGGGGTATGTTAACCCGTGGCCTTCCTCTTCGCATTTTC 1118 || || |||| |||||| || |||||| | || || ||||| |||||||| || || || Sbjct 236039 GCTGTGAAGAAGCTAGGTTTGTGGGGTCTCTTTACTCGTGGGCTTCCTCTCCGTATCGTC 236098 Query 1119 ATGATAGGAACACTCACTGGAGCGCAGTGGGTTATCTATGATGCTGTCAAAGTTTTAGCT 1178 ||||| ||||| || |||||||| ||||||| ||||||||||| |||||||||| | Sbjct 236099 ATGATTGGAACTCTTACTGGAGCTCAGTGGGGAATCTATGATGCCTTCAAAGTTTTCGTG 236158 Query 1179 GGATTG 1184 |||||| Sbjct 236159 GGATTG 236164 Score = 102 bits (112), Expect = 1e-19 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 841 CATATACGATGATGAAATTTGCTACTTTTGAAAACACTGTGGAGCTCATATACAAGAAAG 900 || |||| |||||||| ||||| ||||||| | || |||||| || || ||| | | Sbjct 235736 CAGATACAATGATGAAGTTTGCATCTTTTGAGACCATTGTGGAATATATTTATAAGTATG 235795 Query 901 TGATGCCTACCCCAAAAGAAGAGTGCTCAAAGCCAGTTCAGCTCGGAGTTAGCTTTGCAG 960 || || || | || || |||| || | | ||||| || || || ||||| | Sbjct 235796 CCATCCCCACATCGAAGGACCAGTGTAGTAAATCTCTGCAGCTTGGTGTGAGTTTTGCTG 235855 Query 961 GTGGATACATTGCTGGAATATTCTGCGCCATCATCTCACATCCTGCAGATAATTTGGTGT 1020 ||||||| | ||||| | || || || || | || |||||||| || ||| | || | Sbjct 235856 GTGGATATGTGGCTGGCGTGTTTTGTGCTATAGTGTCTCATCCTGCTGACAATCTTGTCT 235915 Query 1021 CTTTCCTCAATAACTCTAAAGGAGCAACCGTTGCTGATG 1059 |||||||||| || | ||||| ||||| |||| ||||| Sbjct 235916 CTTTCCTCAACAATGCCAAAGGGGCAACTGTTGGTGATG 235954 Score = 57.2 bits (62), Expect = 5e-06 Identities = 37/41 (90%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 801 TTACACAAAGGACTTGTTCCTCTCTGGGGACGCCAGATTCC 841 ||| |||| ||||| ||||||||||||||||| |||||||| Sbjct 235031 TTATACAAGGGACTAGTTCCTCTCTGGGGACGTCAGATTCC 235071 Score = 44.6 bits (48), Expect = 0.030 Identities = 29/32 (91%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 167 ATCGCTGATCCCGAGCTTTCTCTACTCGTCCG 198 ||| |||||||||||||| |||||||| |||| Sbjct 233066 ATCTCTGATCCCGAGCTTCCTCTACTCTTCCG 233097 Score = 37.4 bits (40), Expect = 4.4 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1184 GCCAACCACTGGTGGTGCTTCTCCAGCTACTGC 1216 ||||||||||||||||| |||| ||| |||| Sbjct 236259 GCCAACCACTGGTGGTGTAACTCCTGCTGCTGC 236291 Score = 37.4 bits (40), Expect = 4.4 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1310 TTTTTCTTAATTATTTTGTTTCTGTTGT 1337 ||||| ||||||||||| ||||| |||| Sbjct 8477865 TTTTTTTTAATTATTTTCTTTCTTTTGT 8477892 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1307 TTATTTTTCTTAATTATTTTGTTTC 1331 || |||||||||||| ||||||||| Sbjct 30073410 TTCTTTTTCTTAATTCTTTTGTTTC 30073386 Score = 37.4 bits (40), Expect = 4.4 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 4 AAAATGACATTTCATAACCAAAAACTCA 31 |||||| ||| ||| ||||||||||||| Sbjct 36321569 AAAATGCCATCTCAAAACCAAAAACTCA 36321596 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 53.6 bits (58), Expect = 6e-05 Identities = 56/74 (76%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 663 GCCTCTGCAGAAATCGTCGCTGATGTGGCTCTTTGTCCAATGGAAGCTGTCAAAGTCAGG 722 || ||||| || | | |||||||||||||| ||||| | |||||||| ||||| | Sbjct 23297330 GCATCTGCTCAAGTATTTGCTGATGTGGCTCTCTGTCCTTTCGAAGCTGTGAAAGTTCGT 23297271 Query 723 GTCCAGACTCAGCC 736 || || || ||||| Sbjct 23297270 GTTCAAACGCAGCC 23297257 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 63 CAAAACTCAACCTGACAtttttttCTCTC 91 ||||||||||| | ||| ||||||||||| Sbjct 22698722 CAAAACTCAACTTTACAATTTTTTCTCTC 22698750 Score = 37.4 bits (40), Expect = 4.4 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 63 CAAAACTCAACCTGACAtttttt 85 ||||||||||||||||| ||||| Sbjct 24871670 CAAAACTCAACCTGACAATTTTT 24871692 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 256 TTTCTCCGACTAATTCTTCAGTCTC 280 ||| || |||||||||||||||||| Sbjct 26505340 TTTTTCAGACTAATTCTTCAGTCTC 26505316 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 48.2 bits (52), Expect = 0.002 Identities = 31/34 (91%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 57 TTCCAGCAAAACTCAACCTGACAtttttttCTCT 90 || |||||||||||||||| ||| |||||||||| Sbjct 21471806 TTTCAGCAAAACTCAACCTAACAGTTTTTTCTCT 21471773 Score = 44.6 bits (48), Expect = 0.030 Identities = 30/34 (88%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 57 TTCCAGCAAAACTCAACCTGACAtttttttCTCT 90 || |||||||||||||||| || |||||||||| Sbjct 20837516 TTTCAGCAAAACTCAACCTACCAGTTTTTTCTCT 20837549 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1306 GTTATTTTTCTTAATTATTTTGTTT 1330 ||||||||||||| | ||||||||| Sbjct 10015029 GTTATTTTTCTTACTGATTTTGTTT 10015005 Score = 37.4 bits (40), Expect = 4.4 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 121 AATTTGAATTTCTCATCTC-CTCTCTC 146 |||||||||||||| |||| ||||||| Sbjct 14373536 AATTTGAATTTCTCCTCTCTCTCTCTC 14373562 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 41.0 bits (44), Expect = 0.36 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1308 TATTTTTCTTAATTATTTTGTTTCT 1332 ||||||| ||||||||||||||||| Sbjct 5948245 TATTTTTTTTAATTATTTTGTTTCT 5948221 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1305 AGTTATTTTTCTTAATTATTTTGTT 1329 |||||||||||||| |||| ||||| Sbjct 8406895 AGTTATTTTTCTTAGTTATGTTGTT 8406871 Score = 37.4 bits (40), Expect = 4.4 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1368 ATACATCTAGCTAATATGGAAGTCATTTAAAAT 1400 |||| | || |||||| ||||||||||||||| Sbjct 13754808 ATACTTGTATATAATATAGAAGTCATTTAAAAT 13754840 Score = 37.4 bits (40), Expect = 4.4 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1368 ATACATCTAGCTAATATGGAAGTCATTTAAAAT 1400 |||| | || |||||| ||||||||||||||| Sbjct 13769131 ATACTTGTATATAATATAGAAGTCATTTAAAAT 13769163 Score = 37.4 bits (40), Expect = 4.4 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1368 ATACATCTAGCTAATATGGAAGTCATTTAAAAT 1400 |||| | || |||||| ||||||||||||||| Sbjct 13791121 ATACTTATATATAATATAGAAGTCATTTAAAAT 13791153 Score = 37.4 bits (40), Expect = 4.4 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1306 GTTATTTTTCTTAATTATTT 1325 |||||||||||||||||||| Sbjct 14005933 GTTATTTTTCTTAATTATTT 14005914 Score = 37.4 bits (40), Expect = 4.4 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1091 AACCCGTGGCCTTCCTCTTC 1110 |||||||||||||||||||| Sbjct 14189886 AACCCGTGGCCTTCCTCTTC 14189867 Score = 37.4 bits (40), Expect = 4.4 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1312 TTTCTTAATTATTTTGTTTC 1331 |||||||||||||||||||| Sbjct 41079651 TTTCTTAATTATTTTGTTTC 41079632 Score = 37.4 bits (40), Expect = 4.4 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 281 ATCCAACGGTACCAGTTTCGCCA 303 |||||| |||||||||||||||| Sbjct 41164632 ATCCAAGGGTACCAGTTTCGCCA 41164610 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1307 TTATTTTTCTTAATTATTTTGTTTCT 1332 ||||||||||||||||||| ||||| Sbjct 2068914 TTATTTTTCTTAATTATTTATTTTCT 2068889 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1307 TTATTTTTCTTAATTATTTTGTTTCT 1332 ||||||||||||||||||| ||||| Sbjct 2092038 TTATTTTTCTTAATTATTTATTTTCT 2092013 Score = 39.2 bits (42), Expect = 1.3 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1306 GTTATTTTTCTTAATTATTTT 1326 ||||||||||||||||||||| Sbjct 7911110 GTTATTTTTCTTAATTATTTT 7911090 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1305 AGTTATTTTTCTTAATTATTTTGTT 1329 ||||||||||||| |||||||||| Sbjct 13843016 AGTTATTTTTCTTGGTTATTTTGTT 13842992 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 1.3 Identities = 40/51 (78%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 1283 ATAAAAGGGAAACAGAACTACCAGTTATTTTTCTTAATTATTTTGTTTCTG 1333 |||||||||||| ||| || | ||||| |||| | ||||| ||||||| Sbjct 8962341 ATAAAAGGGAAAGAGATGAGCCGGATATTTGTCTTGA-TATTTCGTTTCTG 8962390 Score = 39.2 bits (42), Expect = 1.3 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1233 AGTGCATAAAATTACAAGAATATT 1256 |||||||||||||||||||| ||| Sbjct 10282846 AGTGCATAAAATTACAAGAAAATT 10282823 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1320 TTATTTTGTTTCTGTTGTCTAGTAT 1344 |||||||||||||||| ||| |||| Sbjct 2655578 TTATTTTGTTTCTGTTTTCTTGTAT 2655602 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1305 AGTTATTTTTCTTAATTATTTTGTT 1329 ||||||||||||| ||||| ||||| Sbjct 6421196 AGTTATTTTTCTTGATTATGTTGTT 6421220 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 39.2 bits (42), Expect = 1.3 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 1396 AAAATATCATTTGCAATACAAGTATAGAA 1424 ||||||||||| | ||||||||| ||||| Sbjct 3135762 AAAATATCATTCGAAATACAAGTTTAGAA 3135790 Score = 37.4 bits (40), Expect = 4.4 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 1305 AGTTATTTTTCTTAATTATTTTGTTTCTGTTGTCTAG 1341 ||||||| | |||||||||||| |||| |||| ||| Sbjct 137144 AGTTATTATACTTAATTATTTT-TTTCCCTTGTGTAG 137179 Score = 37.4 bits (40), Expect = 4.4 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1395 TAAAATATCATTTGCAATACAAGTATAGAACCA 1427 ||| ||| ||||||||||||| |||| ||||| Sbjct 11657361 TAAGATAAGATTTGCAATACAATTATAAAACCA 11657393 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1305 AGTTATTTTTCTTAATTATTTTGTT 1329 |||||||||||||| |||| ||||| Sbjct 22010090 AGTTATTTTTCTTACTTATATTGTT 22010066 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.3 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 1308 TATTTTTCTTAATTATTTTGTTTCTGTTGTC 1338 |||||||| | ||||| || ||||||||||| Sbjct 2561854 TATTTTTCATTATTATATTCTTTCTGTTGTC 2561824 Score = 39.2 bits (42), Expect = 1.3 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 5 AAATGACATTTCATAACCAAAAACTC 30 |||| |||||||||||||| |||||| Sbjct 32152124 AAATCACATTTCATAACCACAAACTC 32152149 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 256 TTTCTCCGACTAATTCTTCAGTCTC 280 ||| || |||||||||||||||||| Sbjct 31294195 TTTTTCAGACTAATTCTTCAGTCTC 31294171 Score = 37.4 bits (40), Expect = 4.4 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1306 GTTATTTTTCTTAATTATTT 1325 |||||||||||||||||||| Sbjct 33605086 GTTATTTTTCTTAATTATTT 33605105 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1311 TTTTCTTAATTATTTTGTTTCTGTT 1335 |||| ||||||||||| |||||||| Sbjct 7377960 TTTTATTAATTATTTTATTTCTGTT 7377936 Score = 37.4 bits (40), Expect = 4.4 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1310 TTTTTCTTAATTATTTTGTTTCT 1332 ||||| ||||||||||||||||| Sbjct 10302951 TTTTTTTTAATTATTTTGTTTCT 10302973 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 4.4 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1373 TCTAGCTAATATGGAAGTCATTTAAAAT 1400 |||| |||| ||||||||||||||||| Sbjct 3752752 TCTATTTAATTTGGAAGTCATTTAAAAT 3752779 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 4.4 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1311 TTTTCTTAATTATTTTGTTTCTG 1333 || |||||||||||||||||||| Sbjct 1051086 TTATCTTAATTATTTTGTTTCTG 1051108 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 37.4 bits (40), Expect = 4.4 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1323 TTTTGTTTCTGTTGTCTAGTATAGAACAAA 1352 ||||||||||||||||||| | ||| |||| Sbjct 5613792 TTTTGTTTCTGTTGTCTAG-AAAGAGCAAA 5613820 Score = 37.4 bits (40), Expect = 4.4 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1307 TTATTTTTCTTAATTATTTTGTT 1329 ||||||||||| ||||||||||| Sbjct 14731878 TTATTTTTCTTGATTATTTTGTT 14731900 Score = 37.4 bits (40), Expect = 4.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1306 GTTATTTTTCTTAATTATTTTGTTT 1330 ||||||||| | ||||||||||||| Sbjct 25436967 GTTATTTTTATAAATTATTTTGTTT 25436943 Score = 37.4 bits (40), Expect = 4.4 Identities = 41/51 (80%), Gaps = 3/51 (6%) Strand=Plus/Minus Query 1302 ACCAGTTATTTTTCTT-AATTATTTT-GTTTC-TGTTGTCTAGTATAGAAC 1349 |||| ||||||||||| |||| |||| ||||| | |||| || |||||| Sbjct 38425771 ACCATTTATTTTTCTTAAATTGTTTTGGTTTCATCTTGTTCTGTGTAGAAC 38425721 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 4.4 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 1307 TTATTTTTCTTAA-TTATTTTGTTTCT 1332 ||||||||||||| |||||| |||||| Sbjct 21298799 TTATTTTTCTTAATTTATTTGGTTTCT 21298773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771528328038 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2