BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=2128 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr1S 223 8e-56 lcl|Jr1D 214 4e-53 lcl|Jr7D 141 2e-31 lcl|Jr7S 104 5e-20 lcl|Jr2D 68.0 4e-09 lcl|Jr3S 42.8 0.15 lcl|Jr3D 42.8 0.15 lcl|Jr8D 41.0 0.52 lcl|Jr6D 41.0 0.52 lcl|Jr5S 41.0 0.52 lcl|Jr5D 41.0 0.52 lcl|Jr4D 39.2 1.8 lcl|Jr2S 39.2 1.8 lcl|Jr8S 37.4 6.4 lcl|Jr6S 37.4 6.4 lcl|Jr4S 37.4 6.4 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 223 bits (246), Expect = 8e-56 Identities = 177/213 (83%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 956 AGGGTGTTGCAATGCCTGCTATGAACAACATGCTTTCTAAATGGATCCCTGTCTCAGAGA 1015 |||||||||| |||||||| ||||| || || || ||||| ||||| || || ||||||| Sbjct 4833223 AGGGTGTTGCTATGCCTGCAATGAATAATATACTCTCTAAGTGGATTCCCGTGTCAGAGA 4833282 Query 1016 GAAGCAGATCGCTTGCACTGGTCTATAGTGGCATGTATCTTGGTTCCGTCACAGGATTGG 1075 |||||||| | |||||||| || || || ||||||||||||||||| |||||||| |||| Sbjct 4833283 GAAGCAGAGCACTTGCACTAGTATACAGCGGCATGTATCTTGGTTCTGTCACAGGGTTGG 4833342 Query 1076 CATTCTCTCCTATGCTAATCACCAAGTTCGGATGGCCATCTGTTTTCTACTCGTTTGGCT 1135 | |||||||| || ||| || ||| || ||||||||||| || ||||||||||||| Sbjct 4833343 CTGTCTCTCCTGCTCTTATCCACAGGTTTGGGTGGCCATCTGTGTTTTACTCGTTTGGCT 4833402 Query 1136 CCCTCGGAAGTATATGGTTTTTGCTATGGCTAA 1168 |||| |||||||| |||||| | ||||||||| Sbjct 4833403 CCCTTGGAAGTATCTGGTTTGCGTTATGGCTAA 4833435 Score = 167 bits (184), Expect = 5e-39 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 1174 GCATATAGCTCTCCCAAGGATGACCCGGACCTAAGTGAAGAAGaaaaaaaGGTTATACTG 1233 ||||||||||| || || || ||||| || || |||| || || |||| | |||| || Sbjct 4833622 GCATATAGCTCACCAAAAGAAGACCCAGAACTTAGTGTGGAGGAGAAAAGGCTTATCTTG 4833681 Query 1234 GGAGGTAGCAAACCAAGGGAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAA 1293 || |||| || | | | ||| |||||| | || ||||| ||||| | || | || ||| Sbjct 4833682 GGTGGTAACATATCGAAGGACCCTGTTTCCGTCATTCCTTGGAAATTGATTTTATCAAAA 4833741 Query 1294 CCCCCAGTCTGGGCTCTCATAATTTCCCACTTCTGCCATAATTGGGGAACTTTCATACTA 1353 | || || |||||||| ||||| ||||| |||||||||||||||||||| || || || Sbjct 4833742 GCACCTGTTTGGGCTCTTATAATCTCCCATTTCTGCCATAATTGGGGAACATTTATTTTA 4833801 Query 1354 TTGACATGGATGCCCACATATTACAATCAGGTCTT 1388 ||||| |||||||| || || ||||||||||| || Sbjct 4833802 TTGACTTGGATGCCTACTTACTACAATCAGGTATT 4833836 Score = 149 bits (164), Expect = 1e-33 Identities = 118/142 (83%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 1380 TCAGGTCTTGAAGTTCAACCTCACTGAATCCGGGCTACTATGCGTTTTGCCATGGCTAAC 1439 |||||| |||||||||||||| || || || ||||| | || || ||||||||| | || Sbjct 4834982 TCAGGTTTTGAAGTTCAACCTTACCGAGTCTGGGCTCTTCTGTGTCTTGCCATGGTTGAC 4835041 Query 1440 CATGGCTGTTTTTGCTAATATTGGAGGTTGGATTGCTGATACTCTTGTGAGCAGAGGTCT 1499 ||||||||||||||| ||||||||||| ||||| || || || ||||||||||||||||| Sbjct 4835042 CATGGCTGTTTTTGCCAATATTGGAGGCTGGATAGCAGACACACTTGTGAGCAGAGGTCT 4835101 Query 1500 TTCAATTACAAACGTTCGAAAG 1521 ||| || ||| ||||| ||| Sbjct 4835102 TTCCATAACAGCAGTTCGTAAG 4835123 Score = 140 bits (154), Expect = 7e-31 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 800 AGATTCTGGGAGGTATATGGGCAGATAAGTTTGGCGGGAAGGTTGTTTTAGGTTTTGGTG 859 ||||| | ||||| |||||||||||||| |||| |||||| | || |||||||| || | Sbjct 4832606 AGATTGTTGGAGGAATATGGGCAGATAAAATTGGTGGGAAGCTGGTATTAGGTTTCGGAG 4832665 Query 860 TTGTCTGGTGGTCCTTTGCCACTATTATGACACCTATTGCTGCTAGACTTGGTCTTCCTT 919 | ||||||||||| | || || ||| ||||||||||||| || | | | || ||||||| Sbjct 4832666 TCGTCTGGTGGTCAGTGGCAACAATTTTGACACCTATTGCAGCAAAAATCGGGCTTCCTT 4832725 Query 920 TTTTGCTTGTAGTGCGGGCGTTCATGGGCATTGGCGAGGGTG 961 |||||||| |||| || || ||||| ||||| |||| || Sbjct 4832726 TTTTGCTTACCATGCGTGCTTTTATGGGAATTGGTGAGGTTG 4832767 Score = 122 bits (134), Expect = 2e-25 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1520 AGATTATGCAATCAATTGGTTTTCTAGGCCCTGCCTTCTTCCTGAGTCAGCTGAGCCATG 1579 |||| |||||||||||||||||| | ||||| |||||||| || | ||||||||||||| Sbjct 4835646 AGATCATGCAATCAATTGGTTTTTTGGGCCCAGCCTTCTTTCTTACGCAGCTGAGCCATG 4835705 Query 1580 TCAAAACTCCAGCAATGGCAGTTCTCTGCATGGCATGCAGTCAGG 1624 |||| || || || ||||| || || ||||||||||||||||||| Sbjct 4835706 TCAAGACACCTGCTATGGCTGTGCTATGCATGGCATGCAGTCAGG 4835750 Score = 107 bits (118), Expect = 4e-21 Identities = 150/210 (71%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 496 AACAGATCTCGTGCTTACTACAAATCAGAGGAGTCAGATATCACGGAAGGA---GTTG-- 550 |||||| | |||||||| ||||| || ||||||| || || || || | | || | Sbjct 4831754 AACAGAACCCGTGCTTATTACAAGTCTGAGGAGTATGACATAACAGATGCAAAGGTGGAC 4831813 Query 551 ----TGCCATCGGCTGATGGCTCAGCTGAAGCTATTTTAGTTGAAGGAAATCTACAGAAC 606 || |||| ||| | || ||||||| ||||||| ||||||||| | | || Sbjct 4831814 TCGCTGACATCAATTGAAGAGTCGAGTGAAGCTGTTTTAGTGGAAGGAAATGTGCCAAAA 4831873 Query 607 GCATCTCCATGGTGGCAGCAGTTTCCTAGACGCTGGGTGATCGTCTTGTTATGCTTTTCG 666 | |||| | |||||| |||||||||| | || ||||||||||| || | || ||| | Sbjct 4831874 GTATCTTCTTGGTGGGAGCAGTTTCCCAAGCGTTGGGTGATCGTACTGCTCTGTTTTACT 4831933 Query 667 TCTTTTCTTCTTTGCAATATGGACCGTGTG 696 | ||||| | ||||| |||||||||||| Sbjct 4831934 GCATTTCTATTGTGCAACATGGACCGTGTG 4831963 Score = 105 bits (116), Expect = 1e-20 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 694 GTGAACATGAGCATTGCAATTCTTCCCATGTCACAAGAATATAACTGGAGTAGTGCAACT 753 ||||| ||||||||||| || ||||| ||||| | || | ||||||| || ||||| Sbjct 4832262 GTGAATATGAGCATTGCTATACTTCCAATGTCGAAGGAGTTCAACTGGAACAGCGCAACA 4832321 Query 754 GTTGGCTTAATTCAGTCCTCTTTCTTCTGGGGCTATTTACTTACTCAGATT 804 ||||||||||| |||||||| || |||||||| || ||||||||||| || Sbjct 4832322 GTTGGCTTAATCCAGTCCTCCTTTTTCTGGGGATACCTACTTACTCAGGTT 4832372 Score = 86.0 bits (94), Expect = 1e-14 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1773 AGGTTCATGGGATGATGTGTTCAAAGTAGCAGTTGCACTGTATCTAATTGGAACTCTGGT 1832 |||||| ||||||||||||||||| || || |||||| |||| || || || || || | Sbjct 4838439 AGGTTCTTGGGATGATGTGTTCAAGGTGGCTGTTGCATTGTACCTCATAGGCACCTTGAT 4838498 Query 1833 CTGGAACTTGTTCGCAACCGGAGAAAAAATTCTCGACTAG 1872 ||||||| | || |||| ||||||| ||||| || ||| Sbjct 4838499 CTGGAACCTCTTTTCAACTGGAGAAAGGATTCTTGAATAG 4838538 Score = 80.6 bits (88), Expect = 6e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1690 GGTGTACTCTTAGGACTATCAAACACAGCAGGAGTCCTAGCTGGTGTCTTTGGCACTGCA 1749 || ||| | || ||||| || || || || ||||| || |||||||||||||| || || Sbjct 4838131 GGAGTATTGTTGGGACTCTCGAATACGGCCGGAGTGCTTGCTGGTGTCTTTGGTACAGCT 4838190 Query 1750 GCTACTGGTTACATCCTCCAACGAGGT 1776 || || |||||||| |||||||||||| Sbjct 4838191 GCAACCGGTTACATACTCCAACGAGGT 4838217 Score = 68.0 bits (74), Expect = 4e-09 Identities = 54/65 (83%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1621 CAGGGCTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGCCCA 1680 ||||| ||||||||||| || || || |||||||| || ||||| ||||||||||| || Sbjct 4837083 CAGGGATCTGATGCATTTTCACAATCTGGTCTCTATTCCAATCACCAAGACATTGGACCG 4837142 Query 1681 CGATA 1685 || || Sbjct 4837143 CGCTA 4837147 Score = 42.8 bits (46), Expect = 0.15 Identities = 31/36 (86%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 34 GAAGATGATGTGCCACGTGTCACTATATCGACCCCC 69 || ||||||| ||||||||||| | | ||||||||| Sbjct 4829353 GAGGATGATGCGCCACGTGTCAGTCTCTCGACCCCC 4829388 Score = 41.0 bits (44), Expect = 0.52 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||||||| Sbjct 11818342 TAGGGTTTTTGGTTTGGCTAAAATTTGCAT 11818371 Score = 39.2 bits (42), Expect = 1.8 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1152 GTTTTTGCTATGGCTAAAATTTGCAT 1177 ||||||| | |||||||||||||||| Sbjct 10771392 GTTTTTGGTTTGGCTAAAATTTGCAT 10771367 Score = 39.2 bits (42), Expect = 1.8 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1152 GTTTTTGCTATGGCTAAAATTTGCAT 1177 ||||||| | |||||||||||||||| Sbjct 13503774 GTTTTTGGTTTGGCTAAAATTTGCAT 13503749 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 214 bits (236), Expect = 4e-53 Identities = 175/213 (82%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 956 AGGGTGTTGCAATGCCTGCTATGAACAACATGCTTTCTAAATGGATCCCTGTCTCAGAGA 1015 |||||||||| |||||||| ||||| || ||||||||||| ||||| || || ||||||| Sbjct 8201771 AGGGTGTTGCTATGCCTGCAATGAATAATATGCTTTCTAAGTGGATTCCGGTTTCAGAGA 8201830 Query 1016 GAAGCAGATCGCTTGCACTGGTCTATAGTGGCATGTATCTTGGTTCCGTCACAGGATTGG 1075 |||||||| | |||||||| || || |||||||||||||||||||| ||| |||| |||| Sbjct 8201831 GAAGCAGAGCACTTGCACTAGTATACAGTGGCATGTATCTTGGTTCTGTCGCAGGGTTGG 8201890 Query 1076 CATTCTCTCCTATGCTAATCACCAAGTTCGGATGGCCATCTGTTTTCTACTCGTTTGGCT 1135 | |||||||| | || ||| ||| || || |||||||| || || ||||| ||||||| Sbjct 8201891 CCGTCTCTCCTGTTCTTATCCACAACTTTGGGTGGCCATCAGTGTTTTACTCATTTGGCT 8201950 Query 1136 CCCTCGGAAGTATATGGTTTTTGCTATGGCTAA 1168 | || |||||||| |||||| ||||| ||| Sbjct 8201951 CTCTTGGAAGTATCTGGTTTGCATTATGGATAA 8201983 Score = 188 bits (208), Expect = 2e-45 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 1174 GCATATAGCTCTCCCAAGGATGACCCGGACCTAAGTGAAGAAGaaaaaaaGGTTATACTG 1233 ||||||||||| ||||| || ||||| || || |||| || ||||||| | |||| || Sbjct 8202204 GCATATAGCTCACCCAAAGAAGACCCAGAACTTAGTGTGGAGGAAAAAAGGCTTATCTTG 8202263 Query 1234 GGAGGTAGCAAACCAAGGGAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAA 1293 || || ||| | | | |||||||||| |||| ||||| ||||| || || | || ||| Sbjct 8202264 GGTGGCAGCGTATCGAAGGAACCTGTTTCAGTCATTCCTTGGAAACTGATTTTATCAAAA 8202323 Query 1294 CCCCCAGTCTGGGCTCTCATAATTTCCCACTTCTGCCATAATTGGGGAACTTTCATACTA 1353 | || || |||||||| ||||| ||||| |||||||||||||||||||| ||||| || Sbjct 8202324 GCACCCGTGTGGGCTCTTATAATCTCCCATTTCTGCCATAATTGGGGAACATTCATTTTA 8202383 Query 1354 TTGACATGGATGCCCACATATTACAATCAGGT 1385 |||||||||||||| || || ||||| ||||| Sbjct 8202384 TTGACATGGATGCCTACTTACTACAACCAGGT 8202415 Score = 141 bits (156), Expect = 2e-31 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 799 CAGATTCTGGGAGGTATATGGGCAGATAAGTTTGGCGGGAAGGTTGTTTTAGGTTTTGGT 858 |||||| | ||||| |||||||||||||| |||| |||||| | || || | |||||| Sbjct 8201126 CAGATTGTTGGAGGCATATGGGCAGATAAAATTGGTGGGAAGCTAGTATTGGCTTTTGGA 8201185 Query 859 GTTGTCTGGTGGTCCTTTGCCACTATTATGACACCTATTGCTGCTAGACTTGGTCTTCCT 918 || ||||||||||| | || || ||| ||||||||||||| || | | | || ||||| Sbjct 8201186 GTGGTCTGGTGGTCTGTAGCTACAATTTTGACACCTATTGCAGCAAAAATCGGGCTTCCA 8201245 Query 919 TTTTTGCTTGTAGTGCGGGCGTTCATGGGCATTGGCGAGGGTG 961 ||||||||| | |||| || || ||||| |||||||||| || Sbjct 8201246 TTTTTGCTTATCATGCGTGCTTTTATGGGAATTGGCGAGGTTG 8201288 Score = 141 bits (156), Expect = 2e-31 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 1381 CAGGTCTTGAAGTTCAACCTCACTGAATCCGGGCTACTATGCGTTTTGCCATGGCTAACC 1440 ||||| ||||| |||||||| || || || |||||| | || || ||||||||| | || Sbjct 8203127 CAGGTTTTGAATTTCAACCTTACCGAGTCTGGGCTATTGTGTGTCTTGCCATGGTTGACT 8203186 Query 1441 ATGGCTGTTTTTGCTAATATTGGAGGTTGGATTGCTGATACTCTTGTGAGCAGAGGTCTT 1500 ||||||| |||||||||||| ||||| |||||||| || || |||||||||||||||||| Sbjct 8203187 ATGGCTGCTTTTGCTAATATAGGAGGATGGATTGCAGACACACTTGTGAGCAGAGGTCTT 8203246 Query 1501 TCAATTACAAACGTTCGAAAG 1521 || || ||| ||||| ||| Sbjct 8203247 TCCATAACAGCAGTTCGTAAG 8203267 Score = 111 bits (122), Expect = 4e-22 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 694 GTGAACATGAGCATTGCAATTCTTCCCATGTCACAAGAATATAACTGGAGTAGTGCAACT 753 || |||||||||||||| || ||||| ||||| | || | ||| |||| |||||||| Sbjct 8200753 GTTAACATGAGCATTGCTATACTTCCAATGTCGAAGGAGTTTAATTGGAACAGTGCAACA 8200812 Query 754 GTTGGCTTAATTCAGTCCTCTTTCTTCTGGGGCTATTTACTTACTCAGATT 804 || || |||||||||||||| || ||||||||||| ||||||||||| || Sbjct 8200813 GTCGGATTAATTCAGTCCTCCTTTTTCTGGGGCTACCTACTTACTCAGGTT 8200863 Score = 109 bits (120), Expect = 1e-21 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 573 TGAAGCTATTTTAGTTGAAGGAAATCTACAGAACGCATCTCCATGGTGGCAGCAGTTTCC 632 ||||||| |||||| ||||||||| | ||||| | |||||| |||||| |||||||||| Sbjct 8200375 TGAAGCTGTTTTAGCAGAAGGAAATGTGCAGAAAGTATCTCCTTGGTGGGAGCAGTTTCC 8200434 Query 633 TAGACGCTGGGTGATCGTCTTGTTATGCTTTTCGTCTTTTCTTCTTTGCAATATGGACCG 692 | || |||||||| || || | || ||||| | ||||| | ||||| |||||||| Sbjct 8200435 CAAGCGTTGGGTGATTGTACTGCTTTGTTTTTCCGCATTTCTATTGTGCAACATGGACCG 8200494 Query 693 TGTGA 697 ||||| Sbjct 8200495 TGTGA 8200499 Score = 104 bits (114), Expect = 5e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1520 AGATTATGCAATCAATTGGTTTTCTAGGCCCTGCCTTCTTCCTGAGTCAGCTGAGCCATG 1579 |||| |||||||||||||| ||| | ||||| |||||||| || | ||||||||||||| Sbjct 8203813 AGATCATGCAATCAATTGGGTTTTTGGGCCCAGCCTTCTTTCTTACGCAGCTGAGCCATG 8203872 Query 1580 TCAAAACTCCAGCAATGGCAGTTCTCTGCATGGCATGCAGTCAGG 1624 | | || || || ||||| || || |||||||| |||||||||| Sbjct 8203873 TTAGGACACCTGCGATGGCTGTGCTATGCATGGCGTGCAGTCAGG 8203917 Score = 89.7 bits (98), Expect = 1e-15 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1252 GAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGGGCTCTC 1311 |||||||||| | || || ||| ||||| |||| ||||| || || ||||| || Sbjct 38525458 GAACCTGTTAAAACAATACCTTGGGGACTAATTTTGTCAAAACCACCTGTATGGGCCCTA 38525399 Query 1312 ATAATTTCCCACTTCTGCCATAATTGGGGAACTTTCATACTATTGACATGGATGCCCACA 1371 ||| | || |||||||| | ||||||||||| || || || ||||||||||||| || Sbjct 38525398 ATAGTGTCTCACTTCTGTCGCAATTGGGGAACATTTATTCTTCTGACATGGATGCCAACC 38525339 Query 1372 TATTACAATCAGGT 1385 || || || || || Sbjct 38525338 TACTATAACCAAGT 38525325 Score = 86.0 bits (94), Expect = 1e-14 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1773 AGGTTCATGGGATGATGTGTTCAAAGTAGCAGTTGCACTGTATCTAATTGGAACTCTGGT 1832 |||||| ||||||||||| ||||| || || |||||| |||| || | || || |||| Sbjct 8206845 AGGTTCTTGGGATGATGTATTCAAGGTGGCTGTTGCATTGTACATACTAGGCACATTGGT 8206904 Query 1833 CTGGAACTTGTTCGCAACCGGAGAAAAAATTCTCGACTAGAA 1874 ||||||| | || | || ||||||| |||||| || ||||| Sbjct 8206905 CTGGAACCTCTTTTCGACTGGAGAAAGAATTCTTGAATAGAA 8206946 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1699 TTAGGACTATCAAACACAGCAGGAGTCCTAGCTGGTGTCTTTGGCACTGCAGCTACTGGT 1758 || ||||| || ||||| || ||||| || |||||||||||||| || || || || || Sbjct 8206546 TTGGGACTGTCGAACACGGCTGGAGTGCTTGCTGGTGTCTTTGGTACAGCTGCAACCGGC 8206605 Query 1759 TACATCCTCCAACGAGGTTCA 1779 ||||| |||||||||||| || Sbjct 8206606 TACATACTCCAACGAGGTACA 8206626 Score = 68.0 bits (74), Expect = 4e-09 Identities = 54/65 (83%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1621 CAGGGCTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGCCCA 1680 ||||| ||||||||||| || || || |||||||| || ||||| ||||||||||| || Sbjct 8205754 CAGGGATCTGATGCATTTTCACAATCTGGTCTCTATTCCAATCACCAAGACATTGGACCT 8205813 Query 1681 CGATA 1685 || || Sbjct 8205814 CGTTA 8205818 Score = 66.2 bits (72), Expect = 1e-08 Identities = 76/101 (75%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 1246 CCAAGGGAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGG 1305 |||||| ||||||||| | || | ||| | ||||| |||| ||||| | || ||| Sbjct 42832171 CCAAGG-AACCTGTTAAAACAATACATTGGGAACTAATTTTGTCAAAACCACATGTATGG 42832229 Query 1306 GCTCTCATAATTTCCCACTTCTGCCATAATTGGGGAACTTT 1346 || || ||| | || |||||||| || ||||||||||| || Sbjct 42832230 GCCCTAATAGTGTCTCACTTCTGTCACAATTGGGGAACATT 42832270 Score = 64.4 bits (70), Expect = 5e-08 Identities = 78/106 (74%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 853 TTTGGTGTTGTCTGGTGGTCCTTTGCCACTATTATGACACCTATTGCTGCTAGACTTGGT 912 |||||||| || |||||||| |||| | | | || || | |||||||| |||||| Sbjct 45679161 TTTGGTGTAGTTTGGTGGTCGATTGCTATAGCTCTCACTCCCAGTGCTGCTAAACTTGGA 45679102 Query 913 CTTCCTTTTTTGCTTGTAGTGCGGGCGTTCATGGGCATTGGCGAGG 958 | ||||| ||||| || | || |||||||||||||| |||| Sbjct 45679101 TTGCCTTTC---CTTGTTGTTCATGCTTTCATGGGCATTGGTGAGG 45679059 Score = 46.4 bits (50), Expect = 0.012 Identities = 34/40 (85%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 34 GAAGATGATGTGCCACGTGTCACTATATCGACCCCCCTTT 73 || ||||||||||||||||||| | | | ||||| ||||| Sbjct 8197761 GAGGATGATGTGCCACGTGTCAGTCTCTTGACCCTCCTTT 8197800 Score = 46.4 bits (50), Expect = 0.012 Identities = 78/112 (70%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 1246 CCAAGGGAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGG 1305 |||||| ||||||||| | || ||| ||||| | || ||||| || || | | Sbjct 45677227 CCAAGG-AACCTGTTAAAACAATATTTTGGGGACTAATTTTATCAAAACCACCTGTATAG 45677169 Query 1306 GCTCTCATAATTTCCCACTTCTGCCATAATTGGGGAACTTTCATACTATTGA 1357 || || ||| | || ||||||| || |||| ||||| || || || |||| Sbjct 45677168 GCCCTAATAGTGTCTCACTTCTATCACTATTGAGGAACATTTATTCTTTTGA 45677117 Score = 39.2 bits (42), Expect = 1.8 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1152 GTTTTTGCTATGGCTAAAATTTGCAT 1177 ||||||| | |||||||||||||||| Sbjct 27884742 GTTTTTGGTTTGGCTAAAATTTGCAT 27884767 Score = 39.2 bits (42), Expect = 1.8 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Plus Query 1987 ATAAAGTAACATGTTAAAGAAAAGATG-TAtttttt 2021 || |||||| ||||||||||| | ||| |||||||| Sbjct 35414447 ATGAAGTAAAATGTTAAAGAAGAAATGATATTTTTT 35414482 Score = 39.2 bits (42), Expect = 1.8 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 120 TCTCTCAGTCTCTCTCTCGGC 140 ||||||||||||||||||||| Sbjct 38583547 TCTCTCAGTCTCTCTCTCGGC 38583567 Score = 37.4 bits (40), Expect = 6.4 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 694 GTGAACATGAGCATTGCAAT 713 |||||||||||||||||||| Sbjct 8200646 GTGAACATGAGCATTGCAAT 8200665 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 32761254 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 32761283 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 33081357 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 33081386 Score = 37.4 bits (40), Expect = 6.4 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1884 TAATAGCTGCAGTGAAATTG 1903 |||||||||||||||||||| Sbjct 44686984 TAATAGCTGCAGTGAAATTG 44686965 Score = 37.4 bits (40), Expect = 6.4 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 2043 CTTACAATTTGATGGGGA-TGGAGaaa 2068 |||||||||||||||||| |||| ||| Sbjct 49555140 CTTACAATTTGATGGGGAGTGGAAAAA 49555114 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 141 bits (156), Expect = 2e-31 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 956 AGGGTGTTGCAATGCCTGCTATGAACAACATGCTTTCTAAATGGATCCCTGTCTCAGAGA 1015 |||||||||| |||||||| ||||| || || | || |||||| | ||||| |||| | Sbjct 7407617 AGGGTGTTGCCATGCCTGCCATGAATAATATTTTGTCAAAATGGGTTCCTGTAGCAGAAA 7407676 Query 1016 GAAGCAGATCGCTTGCACTGGTCTATAGTGGCATGTATCTTGGTTCCGTCACAGGATTGG 1075 |||| ||||| | ||| | || || ||||| ||||| ||||| || ||||| || |||| Sbjct 7407677 GAAGTAGATCATTAGCATTAGTGTACAGTGGGATGTACCTTGGGTCAGTCACTGGCTTGG 7407736 Query 1076 CATTCTCTCCTATGCTAATCACCAAGTTCGGATGGCCATCTGTTTTCTACTCGTTTGGCT 1135 |||| || || | ||||| | |||| ||||||||||| || |||| ||| ||||| | Sbjct 7407737 CATTTTCACCGTTTTTAATCCACCAGTTTGGATGGCCATCAGTCTTCTTCTCTTTTGGTT 7407796 Query 1136 CCCTCGGAAGTATATGGTTTTTGCTATGGCTAA 1168 | || || | | |||||| | ||||||| Sbjct 7407797 CTCTAGGGACAGTTTGGTTTGCTGTGTGGCTAA 7407829 Score = 118 bits (130), Expect = 2e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1382 AGGTCTTGAAGTTCAACCTCACTGAATCCGGGCTACTATGCGTTTTGCCATGGCTAACCA 1441 ||||| |||||||||| || || || || ||||| | || |||||||| ||||| || | Sbjct 7408957 AGGTCCTGAAGTTCAATCTTACGGACTCTGGGCTTATTTGTGTTTTGCCTTGGCTTACAA 7409016 Query 1442 TGGCTGTTTTTGCTAATATTGGAGGTTGGATTGCTGATACTCTTGTGAGCAGAGGTCTTT 1501 |||| ||| ||| ||| ||||||| |||||||||||||| || || |||| |||| | | Sbjct 7409017 TGGCATTTTCTGCAAATCTTGGAGGGTGGATTGCTGATACGCTAGTTAGCAAAGGTTTAT 7409076 Query 1502 CAATTACAAACGTTCGAAAG 1521 | | ||||| ||||| ||| Sbjct 7409077 CTGTGACAAAAGTTCGTAAG 7409096 Score = 93.3 bits (102), Expect = 9e-17 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 808 GGAGGTATATGGGCAGATAAGTTTGGCGGGAAGGTTGTTTTAGGTTTTGGTGTTGTCTGG 867 || || ||||||||||||| |||| || ||| | || | || ||||| || || ||| Sbjct 7407239 GGTGGCATATGGGCAGATACAGTTGGTGGAAAGCTGGTCCTGGGATTTGGGGTAGTTTGG 7407298 Query 868 TGGTCCTTTGCCACTATTATGACACCTATTGCTGCTAGACTTGGTCTTCCTTTTTTGCTT 927 ||||| ||||||| | | || ||||||||||| | | ||| | ||||| || ||| Sbjct 7407299 TGGTCGATTGCCACAGCTCTCACTCCTATTGCTGCCAAAGCTGGGTTGCCTTTCTTACTT 7407358 Query 928 GTAGTGCGGGCGTTCATGGGCATTGGCGAGG 958 || || || || |||||||| || || |||| Sbjct 7407359 GTTGTTCGTGCTTTCATGGGGATCGGTGAGG 7407389 Score = 84.2 bits (92), Expect = 5e-14 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1252 GAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGGGCTCTC 1311 |||||||||| | || || ||| || || |||| ||||| || || ||||| || Sbjct 7408077 GAACCTGTTAAAACAATACCTTGGGGACTGATTTTGTCAAAACCACCTGTATGGGCCCTA 7408136 Query 1312 ATAATTTCCCACTTCTGCCATAATTGGGGAACTTTCATACTATTGACATGGATGCCCACA 1371 ||| | || || ||||| || || ||||| || || || || |||||||||||||| || Sbjct 7408137 ATAGTGTCTCATTTCTGTCACAACTGGGGGACATTTATTCTTTTGACATGGATGCCAACT 7408196 Query 1372 TATTACAATCAGGT 1385 || || ||||| || Sbjct 7408197 TACTATAATCAAGT 7408210 Score = 69.8 bits (76), Expect = 1e-09 Identities = 80/108 (74%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 694 GTGAACATGAGCATTGCAATTCTTCCCATGTCACAAGAATATAACTGGAGTAGTGCAACT 753 || || ||||||||||| || ||||| |||||| ||| | || |||| | || Sbjct 7406705 GTAAATATGAGCATTGCCATACTTCCAATGTCAGCAGAGTTCAATTGGAACCCAACCACA 7406764 Query 754 GTTGGCTTAATTCAGTCCTCTTTCTTCTGGGGCTATTTACTTACTCAG 801 ||||| | || ||||| ||||| ||||||||||| | ||||||||| Sbjct 7406765 GTTGGTCTGATACAGTCTTCTTTTTTCTGGGGCTACCTCCTTACTCAG 7406812 Score = 62.6 bits (68), Expect = 2e-07 Identities = 52/64 (81%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 1622 AGGGCTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGCCCAC 1681 |||| ||||||||||||| ||||| || || || || || |||||||| |||| ||| | Sbjct 7409801 AGGGTACTGATGCATTCTCACAGTCTGGCCTATATTCAAACCATCAAGATATTGCCCCTC 7409860 Query 1682 GATA 1685 |||| Sbjct 7409861 GATA 7409864 Score = 51.8 bits (56), Expect = 3e-04 Identities = 58/78 (74%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 612 TCCATGGTGGCAGCAGTTTCCTAGACGCTGGGTGATCGTCTTGTTATGCTTTTCGTCTTT 671 ||| |||| | | | |||||| | | | ||||| || ||| | ||||| || ||| | || Sbjct 7406475 TCCCTGGTTGGAACGGTTTCCCAAAAGATGGGTCATTGTCGTTTTATGTTTCTCGGCGTT 7406534 Query 672 TCTTCTTTGCAATATGGA 689 || || ||||||||||| Sbjct 7406535 CCTACTCTGCAATATGGA 7406552 Score = 41.0 bits (44), Expect = 0.52 Identities = 38/47 (81%), Gaps = 1/47 (2%) Strand=Plus/Plus Query 104 TTTTCCCGCTTCAGCGTCTCTCAGTCTCTCTCTCGGCTTTATCCAAA 150 ||||||| | ||||||||||| ||||||||| ||| | |||||| Sbjct 10856276 TTTTCCCCCG-CAGCGTCTCTCTCTCTCTCTCTGGGCCTCGTCCAAA 10856321 Score = 41.0 bits (44), Expect = 0.52 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||||||| Sbjct 15963103 TAGGGTTTTTGGTTTGGCTAAAATTTGCAT 15963132 Score = 39.2 bits (42), Expect = 1.8 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 1986 CATAAAGTAACATGTTAAAGAAAA 2009 ||||||| |||||||||||||||| Sbjct 6985579 CATAAAGGAACATGTTAAAGAAAA 6985602 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 104 bits (114), Expect = 5e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1520 AGATTATGCAATCAATTGGTTTTCTAGGCCCTGCCTTCTTCCTGAGTCAGCTGAGCCATG 1579 |||| |||||| ||||||| ||||| || ||||| | |||||| | |||| ||||||||| Sbjct 6865438 AGATCATGCAAACAATTGGATTTCTTGGTCCTGCTTGCTTCCTAACTCAGTTGAGCCATG 6865497 Query 1580 TCAAAACTCCAGCAATGGCAGTTCTCTGCATGGCATGCAGTCAGG 1624 | || |||| |||||||| ||| | || ||||||||||| |||| Sbjct 6865498 TTAATTCTCCTGCAATGGCTGTTTTGTGTATGGCATGCAGCCAGG 6865542 Score = 96.9 bits (106), Expect = 8e-18 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 1246 CCAAGGGAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGG 1305 |||||| ||||||||| | || || ||| ||||| |||| ||||| || || ||| Sbjct 6864066 CCAAGG-AACCTGTTAAAACAATACCTTGGGGACTAATTTTGTCAAAACCACCTGTATGG 6864124 Query 1306 GCTCTCATAATTTCCCACTTCTGCCATAATTGGGGAACTTTCATACTATTGACATGGATG 1365 || || ||| | || |||||||| || |||||||||| || || || |||||||||||| Sbjct 6864125 GCCCTAATAGTGTCTCACTTCTGTCACAATTGGGGAATATTTATTCTTTTGACATGGATG 6864184 Query 1366 CCCACATATTACAATCAGGT 1385 || || || || || || || Sbjct 6864185 CCAACCTACTATAACCAAGT 6864204 Score = 66.2 bits (72), Expect = 1e-08 Identities = 53/64 (83%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 1622 AGGGCTCTGATGCATTCTCTCAGTCGGGTCTCTACTCTAATCATCAAGACATTGGCCCAC 1681 |||| ||||||||||||| ||||| ||| | || || ||||||||||| |||| ||| | Sbjct 6865862 AGGGTACTGATGCATTCTCACAGTCTGGTTTATATTCAAATCATCAAGATATTGCCCCTC 6865921 Query 1682 GATA 1685 |||| Sbjct 6865922 GATA 6865925 Score = 64.4 bits (70), Expect = 5e-08 Identities = 79/108 (73%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 694 GTGAACATGAGCATTGCAATTCTTCCCATGTCACAAGAATATAACTGGAGTAGTGCAACT 753 || || ||||||||||| || ||||| |||||| | | | || |||| || || Sbjct 6862805 GTAAATATGAGCATTGCCATACTTCCAATGTCAGTAAAGTTCAATTGGAACCCAGCGACA 6862864 Query 754 GTTGGCTTAATTCAGTCCTCTTTCTTCTGGGGCTATTTACTTACTCAG 801 || ||| | || ||||| ||||| || |||||||| | ||||||||| Sbjct 6862865 GTCGGCCTGATACAGTCTTCTTTTTTTTGGGGCTACCTTCTTACTCAG 6862912 Score = 50.0 bits (54), Expect = 0.001 Identities = 65/90 (72%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1773 AGGTTCATGGGATGATGTGTTCAAAGTAGCAGTTGCACTGTATCTAATTGGAACTCTGGT 1832 |||||||||||| ||||| ||||| || | |||| || || | |||| ||| | || Sbjct 6867462 AGGTTCATGGGACGATGTATTCAAGGTTTCTGTTGGGCTATACTTGGTTGGCACTGTAGT 6867521 Query 1833 CTGGAACTTGTTCGCAACCGGAGAAAAAAT 1862 |||||| | || |||| || || || || Sbjct 6867522 TTGGAACCTTTTTTCAACTGGGGAGAAGAT 6867551 Score = 37.4 bits (40), Expect = 6.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1987 ATAAAGTAACATGTTAAAGAAAAGA 2011 |||| | |||||||||||||||||| Sbjct 8617614 ATAAGGGAACATGTTAAAGAAAAGA 8617590 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 15540663 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 15540634 Score = 37.4 bits (40), Expect = 6.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1153 TTTTTGCTATGGCTAAAATTTGCAT 1177 |||||| | |||||||||||||||| Sbjct 18013022 TTTTTGGTTTGGCTAAAATTTGCAT 18013046 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 68.0 bits (74), Expect = 4e-09 Identities = 70/92 (76%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1252 GAACCTGTTACAGTGATTCCATGGAAGCTAATACTGTCTAAACCCCCAGTCTGGGCTCTC 1311 |||||||||| | || || ||| ||||| |||| ||||| || | |||||||| Sbjct 41007252 GAACCTGTTAAAACAATACCTTGGGGACTAATTTTGTCAAAACCACCTATATGGGCTCTA 41007311 Query 1312 ATAATTTCCCACTTCTGCCATAATTGGGGAAC 1343 ||| | || |||||||| || ||||||||||| Sbjct 41007312 ATAGTGTCTCACTTCTGTCACAATTGGGGAAC 41007343 Score = 39.2 bits (42), Expect = 1.8 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 893 CTATTGCTGCTAGACTTGGTCTTCCTTTTTT 923 ||||| ||| || |||||| ||||||||||| Sbjct 6689954 CTATTTCTGATAAACTTGGACTTCCTTTTTT 6689924 Score = 37.4 bits (40), Expect = 6.4 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 2004 AGAAAAGATGTAtttttttGGAACTTGACT 2033 ||| ||||| |||||||| ||||||||||| Sbjct 40410077 AGATAAGATCTATTTTTT-GGAACTTGACT 40410049 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 42.8 bits (46), Expect = 0.15 Identities = 30/33 (91%), Gaps = 1/33 (3%) Strand=Plus/Plus Query 993 TAAATGGATCCCTGTCTCAGAGAGAAGCAGATC 1025 ||||||||| ||| |||||| |||||||||||| Sbjct 11737370 TAAATGGATTCCT-TCTCAGTGAGAAGCAGATC 11737401 Score = 41.0 bits (44), Expect = 0.52 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1913 GCTTTATATTTGTTCTTTCTCT 1934 |||||||||||||||||||||| Sbjct 212450 GCTTTATATTTGTTCTTTCTCT 212429 Score = 41.0 bits (44), Expect = 0.52 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||||||| Sbjct 13283124 TAGGGTTTTTGGTTTGGCTAAAATTTGCAT 13283153 Score = 41.0 bits (44), Expect = 0.52 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||||||| Sbjct 15522014 TAGGGTTTTTGGTTTGGCTAAAATTTGCAT 15521985 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 12691833 TAGGGTTTTGGATTTGGCTAAAATTTGCAT 12691804 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 |||| |||| | | |||||||||||||||| Sbjct 12779356 TATGATTTTGGGTTTGGCTAAAATTTGCAT 12779385 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 13152917 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 13152946 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 25622783 TAGGGTTTTGGATTTGGCTAAAATTTGCAT 25622812 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 42.8 bits (46), Expect = 0.15 Identities = 23/23 (100%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 120 TCTCTCAGTCTCTCTCTCGGCTT 142 ||||||||||||||||||||||| Sbjct 7043727 TCTCTCAGTCTCTCTCTCGGCTT 7043705 Score = 41.0 bits (44), Expect = 0.52 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||||||| Sbjct 23880297 TAGGGTTTTTGGTTTGGCTAAAATTTGCAT 23880268 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 14506091 TAAGGTTTTGGGTTTGGCTAAAATTTGCAT 14506062 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1906 TGAGGAAGCTTTATATTTGTTCTTTCTCTG 1935 |||||| || ||||| || ||||||||||| Sbjct 18278733 TGAGGAGGCCTTATAATTCTTCTTTCTCTG 18278762 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1906 TGAGGAAGCTTTATATTTGTTCTTTCTCTG 1935 |||||| || ||||| || ||||||||||| Sbjct 18298345 TGAGGAGGCCTTATAATTCTTCTTTCTCTG 18298374 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||| ||| Sbjct 25448945 TAGGGTTTTTGGTTTGGCTAAAATTTTCAT 25448974 Score = 37.4 bits (40), Expect = 6.4 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 111 GCTTCAGCGTCTCTCAGTCTCTCTCTC 137 ||||||| ||||||| ||||||||||| Sbjct 37083309 GCTTCAG-GTCTCTCTGTCTCTCTCTC 37083284 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 41.0 bits (44), Expect = 0.52 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||||||| Sbjct 18477640 TAGGGTTTTTGGTTTGGCTAAAATTTGCAT 18477669 Score = 41.0 bits (44), Expect = 0.52 Identities = 32/37 (86%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 707 TTGCAATTCTTCCCATGTCACAAGAATATAACTGGAG 743 ||||||||||| |||| ||| ||||| |||||| ||| Sbjct 23351789 TTGCAATTCTTTCCATTTCAGAAGAA-ATAACTAGAG 23351754 Score = 39.2 bits (42), Expect = 1.8 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1152 GTTTTTGCTATGGCTAAAATTTGCAT 1177 ||||||| | |||||||||||||||| Sbjct 10414341 GTTTTTGTTTTGGCTAAAATTTGCAT 10414366 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 18564518 TAGGGTTTTAGATTTGGCTAAAATTTGCAT 18564547 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 41.0 bits (44), Expect = 0.52 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 1151 GGTTTTTGCTATGGCTAAAATTTGCAT 1177 |||||||| | |||||||||||||||| Sbjct 13160226 GGTTTTTGGTTTGGCTAAAATTTGCAT 13160200 Score = 41.0 bits (44), Expect = 0.52 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | |||||||||||||||| Sbjct 13469414 TAGGGTTTTTGGTTTGGCTAAAATTTGCAT 13469443 Score = 39.2 bits (42), Expect = 1.8 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Plus Query 405 TCATGAATCGGGACACATGAGAAGAAGTTTTGG 437 |||||||| | |||||||||||| || |||||| Sbjct 19243816 TCATGAATAGTGACACATGAGAA-AAATTTTGG 19243847 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | || ||||||||||||| Sbjct 11326724 TAGGGTTTTTGGTTTGACTAAAATTTGCAT 11326753 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 17047053 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 17047082 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1906 TGAGGAAGCTTTATATTTGTTCTTTCTCTG 1935 |||||| || ||||| || ||||||||||| Sbjct 25607788 TGAGGAGGCCTTATAATTCTTCTTTCTCTG 25607759 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1906 TGAGGAAGCTTTATATTTGTTCTTTCTCTG 1935 |||||| || ||||| || ||||||||||| Sbjct 28299376 TGAGGAGGCCTTATAATTCTTCTTTCTCTG 28299405 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 41.0 bits (44), Expect = 0.52 Identities = 37/45 (82%), Gaps = 4/45 (9%) Strand=Plus/Plus Query 2014 TAtttttt-tGGAAC---TTGACTCTTTTGAAGCTTACAATTTGA 2054 |||||||| ||| || |||| |||||||||||| |||||| || Sbjct 24412365 TATTTTTTCTGGTACGTTTTGATTCTTTTGAAGCTAACAATTAGA 24412409 Score = 37.4 bits (40), Expect = 6.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1153 TTTTTGCTATGGCTAAAATTTGCAT 1177 |||||| | |||||||||||||||| Sbjct 11935988 TTTTTGGTTTGGCTAAAATTTGCAT 11935964 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | ||| |||||||||||| Sbjct 16608938 TACGGTTTTTGATTTGGGTAAAATTTGCAT 16608909 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 41.0 bits (44), Expect = 0.52 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCATAT 1179 || |||||||| | ||||| |||||||||||| Sbjct 21650122 TAGGGTTTTTGGTTTGGCTGAAATTTGCATAT 21650153 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 21624674 TAGGGTTTTAGGTTTGGCTAAAATTTGCAT 21624645 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 21714219 TAGGGTTTTGGATTTGGCTAAAATTTGCAT 21714248 Score = 37.4 bits (40), Expect = 6.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1153 TTTTTGCTATGGCTAAAATTTGCAT 1177 |||||| | |||||||||||||||| Sbjct 29981620 TTTTTGGTTTGGCTAAAATTTGCAT 29981596 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1906 TGAGGAAGCTTTATATTTGTTCTTTCTCTG 1935 |||||| || ||||| || ||||||||||| Sbjct 30204787 TGAGGAGGCCTTATAATTCTTCTTTCTCTG 30204816 Score = 37.4 bits (40), Expect = 6.4 Identities = 38/46 (83%), Gaps = 3/46 (7%) Strand=Plus/Plus Query 1724 TCCTAGCTGGTGTCTTTGGCACTGCAGCTACTGGTTACATCCTCCA 1769 |||| |||| |||||||||||||||| | || || |||| ||||| Sbjct 30815557 TCCT-GCTGTTGTCTTTGGCACTGCAAC-GCTTGTGACAT-CTCCA 30815599 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.8 Identities = 39/48 (81%), Gaps = 2/48 (4%) Strand=Plus/Plus Query 1500 TTCAAT-TACAAACGTTCGAAAGATTATGCAATCAATTGGTTTTCTAG 1546 |||||| || ||| |||| || | ||||||||||| ||||| ||||| Sbjct 13736158 TTCAATCTAGAAAAGTTCCAACAAATATGCAATCAA-TGGTTATCTAG 13736204 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1906 TGAGGAAGCTTTATATTTGTTCTTTCTCTG 1935 |||||| || ||||| || ||||||||||| Sbjct 6215303 TGAGGAGGCCTTATAATTCTTCTTTCTCTG 6215332 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 |||| |||| | | |||||||||||||||| Sbjct 16976545 TATGATTTTGGGTTTGGCTAAAATTTGCAT 16976574 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 39.2 bits (42), Expect = 1.8 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 283 GGTTCCTTCATCGGCTCAGGCAATGGTTGTC 313 |||||||| |||| || ||||||||||||| Sbjct 8376203 GGTTCCTTGATCGAGTCCGGCAATGGTTGTC 8376233 Score = 39.2 bits (42), Expect = 1.8 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 1986 CATAAAGTAACATGTTAAAGAAAA 2009 ||||||| |||||||||||||||| Sbjct 30273824 CATAAAGGAACATGTTAAAGAAAA 30273847 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||||| | ||||||||||||| || Sbjct 15571680 TAGGGTTTTTGGTTTGGCTAAAATTTGTAT 15571651 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 24180859 TAGGGTTTTGGATTTGGCTAAAATTTGCAT 24180888 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 30523583 TAGGGTTTTCGGTTTGGCTAAAATTTGCAT 30523612 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 10431056 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 10431085 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 10883343 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 10883314 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || ||||||| | |||||||||||||||| Sbjct 12424051 TAGGGTTTTTCGTTTGGCTAAAATTTGCAT 12424022 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 |||| |||| | | |||||||||||||||| Sbjct 7097 TATGATTTTGGGTTTGGCTAAAATTTGCAT 7068 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 ||||||||||| ||||| |||||||||| Sbjct 209792 TATGGTTTTTGAGTTGGCTTAAATTTGCAT 209821 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || |||||| | | |||||||||||||||| Sbjct 281430 TAGGGTTTTGGGTTTGGCTAAAATTTGCAT 281401 Score = 37.4 bits (40), Expect = 6.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1153 TTTTTGCTATGGCTAAAATTTGCAT 1177 |||||| | |||||||||||||||| Sbjct 5240481 TTTTTGGTTTGGCTAAAATTTGCAT 5240505 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || ||| |||| | |||||||||||||||| Sbjct 7193043 TAGGGTGTTTGGTTTGGCTAAAATTTGCAT 7193014 Score = 37.4 bits (40), Expect = 6.4 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1148 TATGGTTTTTGCTATGGCTAAAATTTGCAT 1177 || ||||||| | |||||||||||||||| Sbjct 9840898 TAGGGTTTTTAGTTTGGCTAAAATTTGCAT 9840927 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 6.4 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1153 TTTTTGCTATGGCTAAAATTTGCAT 1177 |||||| | |||||||||||||||| Sbjct 12212480 TTTTTGGTTTGGCTAAAATTTGCAT 12212456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1120667466928 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2