BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=2244 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr1D 834 0.0 lcl|Jr3D 44.6 0.045 lcl|Jr1S 44.6 0.045 lcl|Jr5S 41.0 0.55 lcl|Jr5D 41.0 0.55 lcl|Jr2S 41.0 0.55 lcl|Jr8S 39.2 1.9 lcl|Jr8D 39.2 1.9 lcl|Jr7S 39.2 1.9 lcl|Jr7D 39.2 1.9 lcl|Jr6S 39.2 1.9 lcl|Jr6D 39.2 1.9 lcl|Jr4D 39.2 1.9 lcl|Jr3S 39.2 1.9 lcl|Jr2D 39.2 1.9 lcl|Jr4S 37.4 6.7 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 834 bits (924), Expect = 0.0 Identities = 983/1325 (74%), Gaps = 39/1325 (3%) Strand=Plus/Plus Query 541 ATCAAATATTCCGCAACGCTATGTAATAGTCTTCTTAACTTTCCTCAGCACATGTGTGTG 600 || |||| |||| | || || | |||||| | ||||| ||| ||||||||| ||| || Sbjct 22517592 ATGAAAT-TTCCAAAGCGTTACTTGATAGTCATTTTAACCTTCATCAGCACATCTGTTTG 22517650 Query 601 TTACATAGAGCGTGTTGGCTTCTCTATTGCATATACCGTTGCTGCTGATGCTGCTGGGAT 660 |||||||| ||||| |||||||||||||||||||| ||||| ||||||| || | | Sbjct 22517651 CTACATAGAACGTGTGGGCTTCTCTATTGCATATACAGTTGCAGCTGATGAAGCCAAGGT 22517710 Query 661 CAATCAATCGAGTAAAGGAACCATACTTTCTACATTCTTTGTTGGCTATGCATGTTCTCA 720 | ||||| | |||||||| ||||||||||| |||| | ||| ||||| || || || Sbjct 22517711 AAGCCAATCAACTAAAGGAATGATACTTTCTACGTTCTATTGTGGATATGCCTGCTCACA 22517770 Query 721 AGTCCCTGGAGGTTGGGCAGCTCAGAAAATTGGGGGAAGGAAAGTTCTTCTTCTGTCGTT 780 || |||||||| |||| |||||||||||||||||||||||| || || ||| | || || Sbjct 22517771 GGTGCCTGGAGGATGGGTAGCTCAGAAAATTGGGGGAAGGAAGGTCCTCCTTATTTCTTT 22517830 Query 781 TGTTTTATGGTCATCGACGTGTTTCTTGGTTCCACTTGATCCAAACAGAGTCGGGCTTTT 840 ||| || ||||| ||||| ||| || || || | || || | | ||| | | | || Sbjct 22517831 TGTGTTGTGGTCGTCGACTTGTGCATTAGTCCCTTTAGACCCTAGTAAAGTTGTGGTGTT 22517890 Query 841 GGTTGTTGCCCGTTTACTTGTTGGTGTTGCTCAAGGTTTCATCTTTCCCTCTATCCACAC 900 || ||||||| || ||||||||||| || ||||| |||||||| ||||| |||||||| Sbjct 22517891 AGTGATTGCCCGCTTGCTTGTTGGTGTGGCACAAGGCTTCATCTTCCCCTCCATCCACAC 22517950 Query 901 AGTTTTGGCTCAGTGGGTTCCTCCTCATGAAAGGTCTAGATTGGTTTCGATAACGACATC 960 |||| | || ||||||||||| || |||||||| || |||| ||||| |||| | || Sbjct 22517951 AGTTCTAGCACAGTGGGTTCCGCCCCATGAAAGATCCAGATCCGTTTCTCTAACAATGTC 22518010 Query 961 AGGAATGTATTTAGGTGCAGCTTTAGGAATG--TGGCTTCTCCCTGCTTTAGTTGAGCTT 1018 || |||||| | || |||||| | |||||| || | | ||| || | || || | Sbjct 22518011 TGGGATGTATCTTGGCGCAGCTGTGGGAATGCTTGTCCT-TCCAAGCCTG-GTGAAGTAT 22518068 Query 1019 AGAGGTCCGGAATCAGT-TTTCTTAGCAGAGGCATTAGCAGGTGTTATATGGTCATTGCT 1077 ||||| || |||| || |||||| | |||||| | ||||| || |||| ||||| Sbjct 22518069 AGAGGGCCCCAATCTGTATTTCTT-GTTGAGGCAGCATTAGGTGCCATGTGGTGCTTGCT 22518127 Query 1078 TTGGATTAGGTACGCTACTGACCCACCTCGATCTGAGCATCCAAAAGCTGCTGCTGCTGG 1137 |||| | | ||| |||| |||||| ||||| ||||| ||||| ||||| |||||||||| Sbjct 22518128 TTGGTTCAAGTATGCTAGTGACCCTCCTCGGTCTGAACATCCGAAAGCCACTGCTGCTGG 22518187 Query 1138 ATTCGGAGGTGCTCTGTTACCGACT-AATGTAAACCACCATA---AAGTT---------- 1183 || || | || || | || ||| || | |||||| | | |||| Sbjct 22518188 TTTTGGTGAGTCTTTGCTGCC-ACTCAAAGGAAACCAGAAAATGAAAGTGGAGAATGGTG 22518246 Query 1184 --------------ACTCATA---TCCCGTGGAAGAAAATCATGCTCAGTTTACCCGTTT 1226 |||| | |||| ||||| || || | ||||| || || |||| Sbjct 22518247 GATTGTCTGCCAGAACTCCCAGCATCCCATGGAAAAAGATTTTACTCAGCTTGCCAGTTT 22518306 Query 1227 GGGCGATTGTGGTTAACAATTTCACATTCCATTACGCTTTATATGTGTTGATGAACTGGC 1286 |||| ||||| || || |||||||| |||||||| || || ||||||||||||||||||| Sbjct 22518307 GGGCTATTGTTGTAAATAATTTCACTTTCCATTATGCCTTGTATGTGTTGATGAACTGGC 22518366 Query 1287 TTCCAACGTATTTCGAGCTTGGACTCCAGATCAGTCTTCAGGGGATGGATTCATCAAAGA 1346 | ||||| || || |||| || || ||| | || ||||||| ||||| ||||| || | Sbjct 22518367 TGCCAACATACTTTGAGCAAGGCCTGCAGCTTAGCCTTCAGGAGATGGGATCATCTAAAA 22518426 Query 1347 TGGTGCCATACCTCAACATGTTTGTATTCTCCATTGTTGGTGGGTTCATCGCAGACTATT 1406 || ||||||| |||||| || |||| || | | |||| || | | || ||| | | Sbjct 22518427 TGATGCCATATTGTAACATGGTTATATTTTCAAATATTGGGGGAGTGGTTGCTGACCACT 22518486 Query 1407 TGATCACCAAGAGAATACTCTCGGTAACCAGAACCCGCAAGTTCTTGAACACAGTTGGGT 1466 | |||||||||||||| | || || || | || ||| ||||| |||||||| ||||| | Sbjct 22518487 TAATCACCAAGAGAATTTTGTCTGTGACTAAAATCCGGAAGTTGTTGAACACTGTTGGAT 22518546 Query 1467 TCCTAATTGCTTCAGCGGCATTGATGGTCTTACCCATGTTTAGAACAGAAAATGGTGTGA 1526 || || ||||| | || ||||||| | ||||| || ||||| | ||| | | Sbjct 22518547 TCTTAGTTGCTGCTCTTGCGTTGATGGCAATTCCCATTTTCAGAACCGCTGGTGGAGCCA 22518606 Query 1527 TCTTATGTTCCTCAGTGGCTCTTGGGTTTTTGGCATTAGGAAGAGCCGGTTTTGCGGTGA 1586 |||| ||||| || ||||||||||| || ||||||||||||||||| || |||||||| | Sbjct 22518607 TCTTCTGTTCTTCTGTGGCTCTTGGTTTCTTGGCATTAGGAAGAGCTGGGTTTGCGGTAA 22518666 Query 1587 ACCATATGGATATTGCTCCAAGATATGCAGGAATAGTGATGGGAGTTTCAAATACTGCTG 1646 |||| |||||||||||||| ||||||||||| || ||||||||||||| |||||||||| Sbjct 22518667 ACCACATGGATATTGCTCCGAGATATGCAGGGATTTTGATGGGAGTTTCTAATACTGCTG 22518726 Query 1647 GGACATTAGCTGGAATCATTGGTGTTGATTTGACTGGAAAGCTTCTTGAAGCTTCTAAAT 1706 | ||||| ||||| |||||||| |||||| | ||||| | ||||||||||||| | | | Sbjct 22518727 GCACATTCGCTGGCATCATTGGAGTTGATCTAACTGGTAGGCTTCTTGAAGCTGCGAGAA 22518786 Query 1707 TGGTTTACTCAGATTTGTCACATCCAGAGAGCTGGAGAGTTGTGTTCTTCATCCCGGGTT 1766 | | | |||| | ||| |||||| | ||||||| ||||| | ||| || || | Sbjct 22518787 GTGCTAATGCAGACCTTTCAAGTCCAGAAACCTGGAGAACAGTGTTTTACATACCTGGGT 22518846 Query 1767 TGCTCTGTATCTTTAGCTCTGTTGTGTTTCTGCTGTTTTCTACTGGAGAAAGGATCTTTG 1826 | ||||| |||||||| ||| | |||||| | |||||||| || || || || || |||| Sbjct 22518847 TTCTCTGCATCTTTAGTTCTTTGGTGTTTATACTGTTTTCAACAGGGGAGAGAATTTTTG 22518906 Query 1827 ATTGA 1831 ||||| Sbjct 22518907 ATTGA 22518911 Score = 78.8 bits (86), Expect = 2e-12 Identities = 105/146 (72%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1687 GCTTCTTGAAGCTTCTAAATTGGTTTACTCAGATTTGTCACATCCAGAGAGCTGGAGAGT 1746 ||||||||||||| ||| | | | |||| | ||| | ||| | ||||||| Sbjct 22408336 GCTTCTTGAAGCTGTGAAAACTGCTAATGCAGACCTTTCAAGTTTAGAAACCTGGAGAAC 22408277 Query 1747 TGTGTTCTTCATCCCGGGTTTGCTCTGTATCTTTAGCTCTGTTGTGTTTCTGCTGTTTTC 1806 ||||| | | | || || |||||||| |||||||| ||| | |||||| | |||||||| Sbjct 22408276 AGTGTTTTACTTACCTGGGTTGCTCTGCATCTTTAGTTCTTTGGTGTTTATACTGTTTTC 22408217 Query 1807 TACTGGAGAAAGGATCTTTGATTGAG 1832 || || || || || ||| |||||| Sbjct 22408216 AACAGGGGAGAGAATTTTTTATTGAG 22408191 Score = 39.2 bits (42), Expect = 1.9 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 2071 TATATACTATGAATAAAGAATTGAAAATT 2099 ||| || |||||||||||| ||||||||| Sbjct 22372988 TATTTAGTATGAATAAAGAGTTGAAAATT 22373016 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2219 ATAAAATGAGTATTTTAACGAGG 2241 ||| ||||||||||||||||||| Sbjct 10648577 ATATAATGAGTATTTTAACGAGG 10648599 Score = 37.4 bits (40), Expect = 6.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2125 ttttttttGTTTTATCAGTTTCGATTTTGT 2154 || |||| ||||||||||||| ||| |||| Sbjct 30225205 TTGTTTTCGTTTTATCAGTTTGGATATTGT 30225234 Score = 37.4 bits (40), Expect = 6.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2125 ttttttttGTTTTATCAGTTTCGATTTTGT 2154 || |||| ||||||||||||| ||| |||| Sbjct 30226397 TTGTTTTCGTTTTATCAGTTTGGATGTTGT 30226426 Score = 37.4 bits (40), Expect = 6.7 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Minus Query 356 CAATTTGAGGTAGATTTCGAGAAAAAGCTGAAGAATTTC 394 || ||||||| | |||||||| ||||||| ||||| ||| Sbjct 31719041 CATTTTGAGGAAAATTTCGAG-AAAAGCT-AAGAAGTTC 31719005 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2219 ATAAAATGAGTATTTTAACGAGG 2241 ||| ||||||||||||||||||| Sbjct 42277472 ATATAATGAGTATTTTAACGAGG 42277494 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2219 ATAAAATGAGTATTTTAACGAGG 2241 ||| ||||||||||||||||||| Sbjct 42541821 ATATAATGAGTATTTTAACGAGG 42541799 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 44.6 bits (48), Expect = 0.045 Identities = 30/34 (88%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 856 ACTTGTTGGTGTTGCTCAAGGTTTCATCTTTCCC 889 |||||| ||||| |||||||||||||| ||| || Sbjct 7363507 ACTTGTGGGTGTGGCTCAAGGTTTCATTTTTGCC 7363540 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 489 TTTTTGTATGATATAAATGCTCT 511 ||||||||| ||||||||||||| Sbjct 9632550 TTTTTGTATTATATAAATGCTCT 9632528 Score = 37.4 bits (40), Expect = 6.7 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 131 CTAAATTCTTTCACAAACCCTAAAATTCTCCTCCG 165 |||||| |||| ||||||||||| || |||||| Sbjct 16501708 CTAAATGGTTTCCCAAACCCTAAAGTTGGCCTCCG 16501742 Score = 37.4 bits (40), Expect = 6.7 Identities = 33/39 (85%), Gaps = 3/39 (8%) Strand=Plus/Plus Query 1274 TTGATGAACTGGCTTCCAACGTATTTCGAGC-TTGGACT 1311 |||||||||||||| |||| ||||| |||| || |||| Sbjct 26880743 TTGATGAACTGGCTCCCAATGTATT--GAGCATTTGACT 26880779 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 44.6 bits (48), Expect = 0.045 Identities = 26/27 (96%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 2078 TATGAATAAAGAATTGAAAATTGTAAT 2104 |||||||||||||||||||||| |||| Sbjct 26204159 TATGAATAAAGAATTGAAAATTTTAAT 26204133 Score = 39.2 bits (42), Expect = 1.9 Identities = 32/38 (84%), Gaps = 1/38 (3%) Strand=Plus/Plus Query 1799 CTGTTTTCTACTGGAGAAAGGATCTTTGATTGAGGAAA 1836 || ||||| |||||||||||||| |||| | |||||| Sbjct 4838506 CTCTTTTCAACTGGAGAAAGGATTCTTGAAT-AGGAAA 4838542 Score = 37.4 bits (40), Expect = 6.7 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1948 TTGTGTGTGTAGTAAAGATCTTTTGAGTGATGG 1980 |||||||||||| || ||| |||||| || ||| Sbjct 8685222 TTGTGTGTGTAGGAATGATGTTTTGATTGTTGG 8685254 Score = 37.4 bits (40), Expect = 6.7 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 2071 TATATACTATGAATAAAGAATTGAAAATTGTAA 2103 ||| || |||||||||||| |||||||| ||| Sbjct 9768846 TATTTAGTATGAATAAAGAGCTGAAAATTATAA 9768878 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2213 TTCATTATAAAATGAGTATTTTA 2235 |||||||||| |||||||||||| Sbjct 14485572 TTCATTATAATATGAGTATTTTA 14485550 Score = 37.4 bits (40), Expect = 6.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1696 AGCTTCTAAATTGGTTTACTCAGATTTGTC 1725 |||||||||||||| || ||| ||||||| Sbjct 19925350 AGCTTCTAAATTGGATTCATCAAATTTGTC 19925379 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1783 CTCTGTTGTGTTTCTGCTGTTTT 1805 ||||||||| ||||||||||||| Sbjct 26526410 CTCTGTTGTTTTTCTGCTGTTTT 26526388 Score = 37.4 bits (40), Expect = 6.7 Identities = 37/46 (80%), Gaps = 3/46 (7%) Strand=Plus/Plus Query 2065 TTTCAATATATACTATGAATAAAGAATTGAAAATTGT--AATCTTA 2108 |||| |||| | ||| ||||||||||| |||||| | ||||||| Sbjct 29727638 TTTCTGTATAAAATAT-AATAAAGAATTCAAAATTTTCAAATCTTA 29727682 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 41.0 bits (44), Expect = 0.55 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 2046 AGAGTATTATTGGTTGATCTTTCAATA 2072 |||| |||||||||||||||||| ||| Sbjct 6292888 AGAGGATTATTGGTTGATCTTTCCATA 6292862 Score = 39.2 bits (42), Expect = 1.9 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 238 TTTGTCATTTCCCCCAAATCTCTC 261 ||||||||| |||||||||||||| Sbjct 1243200 TTTGTCATTCCCCCCAAATCTCTC 1243223 Score = 39.2 bits (42), Expect = 1.9 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 4 tttttttCACCCGTTAATTAATAAAATAAGAAAT 37 |||||| |||| |||| || ||||||||||||| Sbjct 10219549 TTTTTTAAACCCCTTAAATATTAAAATAAGAAAT 10219582 Score = 39.2 bits (42), Expect = 1.9 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 131 CTAAATTCTTTCACAAACCCTAAAATTCTCCTCC 164 |||||| |||| ||||||||||| ||| ||||| Sbjct 20371714 CTAAATGGTTTCCCAAACCCTAAAGTTCGCCTCC 20371747 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2082 AATAAAGAATTGAAAATTGTAAT 2104 ||||||||||||||||||| ||| Sbjct 6014040 AATAAAGAATTGAAAATTGAAAT 6014062 Score = 37.4 bits (40), Expect = 6.7 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 211 ctctcCACCGTTAAACTTCAATACCCATTTGTCAT 245 ||||||||| ||| || || | |||||||||||| Sbjct 13479901 CTCTCCACCTTTACACGTCTCTTCCCATTTGTCAT 13479867 Score = 37.4 bits (40), Expect = 6.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 130 TCTAAATTCTTTCACAAACCCTAAAATTCT 159 |||| ||||||| ||||||||||||||| Sbjct 19575500 TCTATTTTCTTTCCTAAACCCTAAAATTCT 19575471 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 41.0 bits (44), Expect = 0.55 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 877 TTTCATCTTTCCCTCTATCCACACAGT 903 ||| ||||||||||||||||| ||||| Sbjct 9824553 TTTTATCTTTCCCTCTATCCAAACAGT 9824579 Score = 39.2 bits (42), Expect = 1.9 Identities = 31/36 (86%), Gaps = 1/36 (3%) Strand=Plus/Minus Query 2201 AAAAGTTTTGAGTTCATTATAAAATGAGTATTTTAA 2236 |||||||||||||||| ||||| | |||| ||||| Sbjct 1260188 AAAAGTTTTGAGTTCA-GATAAATTTAGTAATTTAA 1260154 Score = 39.2 bits (42), Expect = 1.9 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1676 TTGACTGGAAAGCTTCTTGAA 1696 ||||||||||||||||||||| Sbjct 14569111 TTGACTGGAAAGCTTCTTGAA 14569091 Score = 37.4 bits (40), Expect = 6.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2070 ATATATACTATGAATAAAGAATTGAAAATT 2099 || ||| |||||||||||||| ||||||| Sbjct 625137 ATTTATTATATGAATAAAGAATAGAAAATT 625166 Score = 37.4 bits (40), Expect = 6.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1499 CCCATGTTTAGAACAGAAAATGGTG 1523 || ||||||| |||||||||||||| Sbjct 8061807 CCAATGTTTATAACAGAAAATGGTG 8061831 Score = 37.4 bits (40), Expect = 6.7 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 198 tctctctctcgctctctcCACCGTTAAACTTCAAT 232 |||||||||| ||||||| | ||||||||||| Sbjct 14653387 TCTCTCTCTCTCTCTCTCTAGTTATAAACTTCAAT 14653421 Score = 37.4 bits (40), Expect = 6.7 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 2071 TATATACTATGAATAAAGAATTGAAAATTGTAA 2103 ||| || |||||||||||| |||||||| ||| Sbjct 21427484 TATTTAGCATGAATAAAGAACTGAAAATTATAA 21427516 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 41.0 bits (44), Expect = 0.55 Identities = 39/49 (80%), Gaps = 1/49 (2%) Strand=Plus/Minus Query 2050 TATTATTGGTTGATCTTTCAA-TATATACTATGAATAAAGAATTGAAAA 2097 ||||||| || | | |||| ||| || |||||||||||||| ||||| Sbjct 27865650 TATTATTTTTTCTTTTATCAAATATTTAATATGAATAAAGAATAGAAAA 27865602 Score = 39.2 bits (42), Expect = 1.9 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 2071 TATATACTATGAATAAAGAATTGAAAATTGTAATCT 2106 ||| || ||||||||||| ||||||||| ||| || Sbjct 21089763 TATTTAGCATGAATAAAGAGTTGAAAATTATAAACT 21089798 Score = 37.4 bits (40), Expect = 6.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1670 GTTGATTTGACTGGAAAGCTTCTTGAAG 1697 |||||||||||||| || ||||||||| Sbjct 2467517 GTTGATTTGACTGGGAATTTTCTTGAAG 2467544 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2219 ATAAAATGAGTATTTTAACGAGG 2241 ||| ||||||||||||||||||| Sbjct 11645900 ATATAATGAGTATTTTAACGAGG 11645922 Score = 37.4 bits (40), Expect = 6.7 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 2071 TATATACTATGAATAAAGAATTGAAAATTGTAA 2103 ||| || |||||||||||| |||||||| ||| Sbjct 29376643 TATTTAGTATGAATAAAGAGCTGAAAATTATAA 29376611 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 39.2 bits (42), Expect = 1.9 Identities = 34/41 (83%), Gaps = 1/41 (2%) Strand=Plus/Minus Query 2061 GATCTTTCAATATATACT-ATGAATAAAGAATTGAAAATTG 2100 || ||||||||||||| | || ||||| |||||||| ||| Sbjct 15447592 GAACTTTCAATATATATTAATCAATAATCAATTGAAAGTTG 15447552 Score = 39.2 bits (42), Expect = 1.9 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 119 CTTTTGTTTCTTCTAAATTCT 139 ||||||||||||||||||||| Sbjct 17560600 CTTTTGTTTCTTCTAAATTCT 17560620 Score = 37.4 bits (40), Expect = 6.7 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1840 aaaaaGATCAAAACTTTTAGAGAAACCC 1867 ||||| ||||||||||||| || ||||| Sbjct 1946584 AAAAAAATCAAAACTTTTATAGGAACCC 1946557 Score = 37.4 bits (40), Expect = 6.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1827 ATTGAGGAAAGaaaaaaaGA 1846 |||||||||||||||||||| Sbjct 3179336 ATTGAGGAAAGAAAAAAAGA 3179317 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2219 ATAAAATGAGTATTTTAACGAGG 2241 ||| ||||||||||||||||||| Sbjct 3879283 ATATAATGAGTATTTTAACGAGG 3879305 Score = 37.4 bits (40), Expect = 6.7 Identities = 35/44 (80%), Gaps = 2/44 (5%) Strand=Plus/Minus Query 1951 TGTGTGTAGTAAAGATCTTTTGAGTGATGGTTTTGAAATATTGT 1994 ||||| |||| || || || ||| |||| ||||||||||||| Sbjct 5054538 TGTGTATAGTGAATATGTTGTGAT--ATGGATTTGAAATATTGT 5054497 Score = 37.4 bits (40), Expect = 6.7 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 110 CATCATCTTCTTTTGTTTCTTCTAAATTCTTTCACAA 146 || ||||||||||| |||||| | ||||||||| || Sbjct 13403000 CACCATCTTCTTTTTTTTCTTAT-CATTCTTTCATAA 13402965 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 1.9 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 2071 TATATACTATGAATAAAGAATTGAAAATTGTAATCT 2106 ||| || |||||||||||| |||||||| ||| || Sbjct 19931129 TATTTAGTATGAATAAAGAGCTGAAAATTATAAACT 19931164 Score = 39.2 bits (42), Expect = 1.9 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 384 TGAAGAATTTCGGAACAACTAAGA 407 |||||||||||| ||||||||||| Sbjct 21756246 TGAAGAATTTCGAAACAACTAAGA 21756269 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2213 TTCATTATAAAATGAGTATTTTA 2235 |||||||||| |||||||||||| Sbjct 142052 TTCATTATAATATGAGTATTTTA 142030 Score = 37.4 bits (40), Expect = 6.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1980 GTTTTGAAATATTGTCTTCA 1999 |||||||||||||||||||| Sbjct 8991343 GTTTTGAAATATTGTCTTCA 8991324 Score = 37.4 bits (40), Expect = 6.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 475 GGTGCTTGAGAGGGTTTTTG 494 |||||||||||||||||||| Sbjct 19944134 GGTGCTTGAGAGGGTTTTTG 19944115 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2219 ATAAAATGAGTATTTTAACGAGG 2241 ||| ||||||||||||||||||| Sbjct 32599142 ATATAATGAGTATTTTAACGAGG 32599120 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 1.9 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 131 CTAAATTCTTTCACAAACCCTAAAATTCTCCTCC 164 |||||| |||| ||||||||||| || |||||| Sbjct 14661067 CTAAATGGTTTCCCAAACCCTAAAGTTGTCCTCC 14661100 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 115 TCTTCTTTTGTTTCTTCTAAATT 137 |||||||||||||||||||| || Sbjct 7634421 TCTTCTTTTGTTTCTTCTAACTT 7634443 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 39.2 bits (42), Expect = 1.9 Identities = 39/51 (76%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 2187 TAATTGGATATTGTAAAAGTTTTGAGTTCATTATAAAATGAGTATTTTAAC 2237 ||||| | |||||||| || || || |||| |||| ||||||||||| Sbjct 2307674 TAATTTGTGATTGTAAATATTATGTTTTTATTAAAAAAAAAGTATTTTAAC 2307724 Score = 37.4 bits (40), Expect = 6.7 Identities = 31/37 (84%), Gaps = 2/37 (5%) Strand=Plus/Minus Query 943 GGTTTCGATAAC--GACATCAGGAATGTATTTAGGTG 977 |||||||| || || ||||||||||||| |||||| Sbjct 24866223 GGTTTCGAAAAAATGATATCAGGAATGTATCTAGGTG 24866187 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 39.2 bits (42), Expect = 1.9 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 2122 CAtttttt-tttGTTTTATCAGTTTCGA 2148 |||||||| |||||||||||||||| || Sbjct 8408896 CATTTTTTATTTGTTTTATCAGTTTGGA 8408923 Score = 37.4 bits (40), Expect = 6.7 Identities = 33/41 (80%), Gaps = 3/41 (7%) Strand=Plus/Minus Query 118 TCTTTTGTTTCTTCTAAATTCTTTCACAAACCCTAAAATTC 158 || |||||| | |||| |||| ||||||||||||| ||| Sbjct 4399867 TCCTTTGTTGCGTCTA---TCTTCCACAAACCCTAAACTTC 4399830 Score = 37.4 bits (40), Expect = 6.7 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 2123 AtttttttttGTTTTATCAGTTTCGATTTT 2152 ||||||||||||||| | ||||||||||| Sbjct 7175833 ATTTTTTTTTGTTTT-TATGTTTCGATTTT 7175861 Score = 37.4 bits (40), Expect = 6.7 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2045 AAGAGTATTATTGGTTGATCTTTCAATATA 2074 ||||||| ||||||||||| |||| || || Sbjct 7416459 AAGAGTAATATTGGTTGATGTTTCTATGTA 7416488 Score = 37.4 bits (40), Expect = 6.7 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 110 CATCATCTTCTTTTGTTTCTTCTAAATTCTTT 141 ||||||| | ||||||||||||| | |||||| Sbjct 24247472 CATCATCAT-TTTTGTTTCTTCTCATTTCTTT 24247502 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 1.9 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 2072 ATATACTATGAATAAAGAATTGAAAA 2097 ||||||||||||||||| |||| ||| Sbjct 2582101 ATATACTATGAATAAAGTATTGCAAA 2582076 Score = 39.2 bits (42), Expect = 1.9 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 2071 TATATACTATGAATAAAGAATTGAAAATT 2099 ||| || |||||||||||| ||||||||| Sbjct 13287454 TATTTAATATGAATAAAGAGTTGAAAATT 13287426 Score = 37.4 bits (40), Expect = 6.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 442 TTTTTCCTCCTGGTCTCTTT 461 |||||||||||||||||||| Sbjct 20174482 TTTTTCCTCCTGGTCTCTTT 20174463 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2124 tttttttttGTTTTATCAGTTTC 2146 ||||||||| ||||||||||||| Sbjct 21197629 TTTTTTTTTTTTTTATCAGTTTC 21197651 Score = 37.4 bits (40), Expect = 6.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1826 GATTGAGGAAAGaaaaaaaGATCAA 1850 ||||||||||||||||||| | ||| Sbjct 21831399 GATTGAGGAAAGAAAAAAAAAACAA 21831375 Score = 37.4 bits (40), Expect = 6.7 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 2181 GTTTTGTAATTGGATATTGTAAAAGTTTTG 2210 ||||||| |||||| |||||||||||||| Sbjct 22038711 GTTTTGTT-TTGGATTTTGTAAAAGTTTTG 22038739 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 1.9 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 112 TCATCTTCTT-TTGTTTCTTCTAAATTCTTT 141 |||||||||| || || |||||||||||||| Sbjct 841067 TCATCTTCTTATTCTTCCTTCTAAATTCTTT 841097 Score = 39.2 bits (42), Expect = 1.9 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 131 CTAAATTCTTTCACAAACCCTAAAATTCTCCTCC 164 |||||| |||| ||||||||||| || |||||| Sbjct 11310687 CTAAATGGTTTCCCAAACCCTAAAGTTGTCCTCC 11310720 Score = 39.2 bits (42), Expect = 1.9 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 2071 TATATACTATGAATAAAGAATTGAAAATTGTAATCT 2106 ||| || ||||||||||| ||||||||| ||| || Sbjct 14799917 TATTTAGCATGAATAAAGAGTTGAAAATTATAAACT 14799882 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2078 TATGAATAAAGAATTGAAAATTG 2100 |||||||||| |||||||||||| Sbjct 820418 TATGAATAAATAATTGAAAATTG 820396 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2069 AATATATACTATGAATAAAGAAT 2091 |||||||||| |||||||||||| Sbjct 29512509 AATATATACTCTGAATAAAGAAT 29512531 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 39.2 bits (42), Expect = 1.9 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 2071 TATATACTATGAATAAAGAATTGAAAATT 2099 ||| |||||| ||||||||||| |||||| Sbjct 23694052 TATCTACTATAAATAAAGAATTAAAAATT 23694024 Score = 39.2 bits (42), Expect = 1.9 Identities = 29/33 (88%), Gaps = 2/33 (6%) Strand=Plus/Plus Query 1160 ACTAATGTAAACCACCATAAAGT--TACTCATA 1190 || |||||||||||||||||||| ||||||| Sbjct 25219039 ACAAATGTAAACCACCATAAAGTCGAACTCATA 25219071 Score = 37.4 bits (40), Expect = 6.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 264 ATTTCTTAAATCTAATTTGGATTTA 288 ||||||||||||| ||| ||||||| Sbjct 1891342 ATTTCTTAAATCTTATTGGGATTTA 1891366 Score = 37.4 bits (40), Expect = 6.7 Identities = 28/33 (85%), Gaps = 4/33 (12%) Strand=Plus/Minus Query 1819 GATCTTTGATTGAGGAAAGaa----aaaaaGAT 1847 |||||| |||||||||||||| |||||||| Sbjct 5098750 GATCTTGGATTGAGGAAAGAATCTCAAAAAGAT 5098718 Score = 37.4 bits (40), Expect = 6.7 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 130 TCTAAATTCTTTCACAAACCCTAAAATTCTCCTCC 164 |||||||| ||| ||||||||||| || ||||| Sbjct 6438594 TCTAAATTGTTTTCCAAACCCTAAAGTTGGCCTCC 6438560 Score = 37.4 bits (40), Expect = 6.7 Identities = 29/34 (85%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 2069 AATATATACTATGAATAA---AGAATTGAAAATT 2099 |||||||||| ||||||| |||||| |||||| Sbjct 9473963 AATATATACTCTGAATAAAGAAGAATTTAAAATT 9473996 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 39.2 bits (42), Expect = 1.9 Identities = 29/34 (85%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 131 CTAAATTCTTTCACAAACCCTAAAATTCTCCTCC 164 ||||| | |||| |||||||||||||| ||||| Sbjct 28013760 CTAAACTGTTTCCCAAACCCTAAAATTGGCCTCC 28013727 Score = 37.4 bits (40), Expect = 6.7 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 531 ACATGAAGTTATCAAATATT 550 |||||||||||||||||||| Sbjct 19384909 ACATGAAGTTATCAAATATT 19384928 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 6.7 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 2082 AATAAAGA--ATTGAAAATTGTAATCTTA 2108 |||||||| ||| ||||||||||||||| Sbjct 1046780 AATAAAGAGAATTTAAAATTGTAATCTTA 1046752 Score = 37.4 bits (40), Expect = 6.7 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 519 AGAAAAGGTCTAACATGAAGTTATCAAATATTC 551 ||||||| || ||||||||||| |||| |||| Sbjct 2494331 AGAAAAGATCCAACATGAAGTTTTCAAGGATTC 2494299 Score = 37.4 bits (40), Expect = 6.7 Identities = 36/44 (82%), Gaps = 2/44 (5%) Strand=Plus/Minus Query 901 AGTTTTGGCTCAGTGGGTTCCTCC-TCATGAAAGGTCTAGATTG 943 || |||||||||| || | |||| ||||||||||| |||||| Sbjct 7138363 AGCTTTGGCTCAGAGG-TCCCTCGATCATGAAAGGTACAGATTG 7138321 Score = 37.4 bits (40), Expect = 6.7 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2213 TTCATTATAAAATGAGTATTTTA 2235 |||||||||| |||||||||||| Sbjct 11479986 TTCATTATAATATGAGTATTTTA 11480008 Score = 37.4 bits (40), Expect = 6.7 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 117 TTCTTTTGTTTCTTCTAAATTCTTT 141 |||| ||||||||||||||||||| Sbjct 11850983 TTCTAGTGTTTCTTCTAAATTCTTT 11850959 Score = 37.4 bits (40), Expect = 6.7 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 2188 AATTGGATATTGTAAAAGTTTTGAGTTCATTATAAAAT 2225 ||||||||||| | ||||||||||| |||| |||| Sbjct 27662054 AATTGGATATTTTCAAAGTTTTGAGGCTTTTATCAAAT 27662091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182689139716 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2