BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=2830 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr8D 107 6e-21 lcl|Jr8S 89.7 2e-15 lcl|Jr2D 59.0 3e-06 lcl|Jr2S 57.2 9e-06 lcl|Jr3D 48.2 0.005 lcl|Jr6D 46.4 0.016 lcl|Jr6S 44.6 0.057 lcl|Jr5D 44.6 0.057 lcl|Jr4D 44.6 0.057 lcl|Jr7D 42.8 0.20 lcl|Jr5S 42.8 0.20 lcl|Jr1S 42.8 0.20 lcl|Jr1D 42.8 0.20 lcl|Jr4S 41.0 0.70 lcl|Jr3S 41.0 0.70 lcl|JrScfU0001 39.2 2.4 lcl|Jr7S 39.2 2.4 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 107 bits (118), Expect = 6e-21 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1084 GGCACAGCAAGATCAAAACGGCCAAAGGGACACGAGATCGTAGGATGAGACTCTCGCTAG 1143 ||||||||||||| || || || ||| || | ||||| || |||||| | || || | Sbjct 25260070 GGCACAGCAAGATTAACACTGCGCGAGGCCCAAGGGATCGGAGAATGAGATTGTCCCTTG 25260011 Query 1144 ATGTCGCCAAAGAGTTGTTTGGCTTACAAGACATGCTTGGATTTGACAAAGCCAGCAAAA 1203 | || ||| |||| || ||| | ||||||||||| || |||||||| || ||||| | Sbjct 25260010 AAGTTGCCCGCAAGTTTTTCGGCCTGCAAGACATGCTAGGCTTTGACAAGGCTAGCAAGA 25259951 Query 1204 CCGTTGAATGGTTGCTTACACAAGCAAAACCTGAGATCA 1242 | ||||| ||| | || ||| ||||||||||| |||| Sbjct 25259950 CTGTTGAGTGGCTACTCCTACAGGCAAAACCTGAAATCA 25259912 Score = 78.8 bits (86), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 1074 AGAACGGACAGGCACAGCAAGATCAAAACGGCCAAAGGGACACGAGATCGTAGGATGAGA 1133 |||| ||||||||||||||||||| || || | || | ||||||| || ||||| Sbjct 360000 AGAA-GGACAGGCACAGCAAGATCTGTACAGCTCATGGCCCGAGAGATCGCAGAATGAGG 359942 Query 1134 CTCTCGCT--AGATGTCGCCAAAGAGTTGTTTGGCTTACAAGACATGCTTGGATTTGACA 1191 | || || |||| ||| | |||| |||| | ||||||||| | || ||||| | Sbjct 359941 TTGTCCCTTCAGATTGCGCGTA--AGTTCTTTGATCTTCAAGACATGTTAGGCTTTGATA 359884 Query 1192 AAGCCAGCAAAACCGTTGAATGGTTGCTTAC 1222 |||| ||||||||| |||| ||| | |||| Sbjct 359883 AAGCGAGCAAAACCATTGAGTGGCTATTTAC 359853 Score = 42.8 bits (46), Expect = 0.20 Identities = 46/57 (81%), Gaps = 3/57 (5%) Strand=Plus/Plus Query 1532 ATTTACAATTATATATAGAGTACTTTCTA-TCAAAAT-GTTACAAAAGATAAATTAT 1586 ||||| ||| |||||| | || ||| || | ||||| ||||||||||| ||||||| Sbjct 9600093 ATTTAAAATC-TATATAAATTATTTTTTAATAAAAATAGTTACAAAAGAAAAATTAT 9600148 Score = 41.0 bits (44), Expect = 0.70 Identities = 27/29 (93%), Gaps = 1/29 (3%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAATAAA 101 |||||| ||||||||||||| |||||||| Sbjct 3292096 AATTAA-AAAAATATATAAAAAAAATAAA 3292123 Score = 41.0 bits (44), Expect = 0.70 Identities = 40/49 (82%), Gaps = 2/49 (4%) Strand=Plus/Plus Query 553 AGATT-ATAGTACAAGTGTCATTCTCAAAATTTT-GTCTTAGGGTTTTT 599 ||||| || || ||| || ||||| || ||||| |||||||||||||| Sbjct 25126714 AGATTCATTGTTCAATTGAGATTCTAAACATTTTCGTCTTAGGGTTTTT 25126762 Score = 39.2 bits (42), Expect = 2.4 Identities = 44/57 (77%), Gaps = 4/57 (7%) Strand=Plus/Minus Query 2606 GTGTCAAATA-TTAAACCTATGTGAAGAAATTAATGCA---ATTTGTATAATATTTT 2658 || ||||| | |||||| |||||||||||| ||| | |||| ||| ||||||| Sbjct 7866048 GTTTCAAAAACTTAAACTGATGTGAAGAAATAAATTTAATTATTTATATTATATTTT 7865992 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATAAATG 103 |||| ||||||||||||| ||||| |||| Sbjct 27615732 TTAAAAAAAATATATAAAAAAAATGAATG 27615760 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 2611 AAATATTAAACCTATGTGAAGAAATTAAT 2639 |||||||||||||| |||| |||||||| Sbjct 28557121 AAATATTAAACCTACATGAAAAAATTAAT 28557149 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 2326 TATGGTTTTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||||||||||||| ||| ||| | | ||||||||||||| Sbjct 2910462 TATGGTTTTTATTATTCGTGTTTGCTACCTTTTTTTTTTTTTT 2910420 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 70 AGGAATTAAGAAAAATATATAAACAAAATAAAT 102 |||||| |||||||||||| || |||||||| Sbjct 6286373 AGGAATCAAGAAAAATATAAAATATAAATAAAT 6286341 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1689 AGGAGGAGAGAGCGAAAGCTAGAGAAAGAG 1718 |||| ||||||||||||| ||| |||||| Sbjct 16565408 AGGAAGAGAGAGCGAAAGACAGAAAAAGAG 16565437 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2220 GAAGTTAGTTTTTGTGTTTTGTGGA 2244 |||||||||||||| ||||||||| Sbjct 16854882 GAAGTTAGTTTTTGGTTTTTGTGGA 16854906 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATA-AACAAAATAAA 101 ||| |||||||||||||| || |||||||| Sbjct 18602010 AATAAAGAAAAATATATAGAATAAAATAAA 18601981 Score = 37.4 bits (40), Expect = 8.5 Identities = 38/48 (79%), Gaps = 5/48 (10%) Strand=Plus/Minus Query 2543 TATGtttttttttCT---TAACATCGTAATTAATCATGTTTATATGAA 2587 |||||||| |||| | || || |||||||| ||||||||||||| Sbjct 22289499 TATGTTTTGTTTTATGGGTACCAC--TAATTAATTATGTTTATATGAA 22289454 Score = 37.4 bits (40), Expect = 8.5 Identities = 30/35 (86%), Gaps = 1/35 (3%) Strand=Plus/Minus Query 8 AACATCTATTATCACATTTTCACaaaaaacaaaaa 42 |||| ||||||||||||| | | |||||| ||||| Sbjct 26104469 AACAACTATTATCACATTGT-AGAAAAAAAAAAAA 26104436 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 39 aaaaCGAATATATTTTTATC 58 |||||||||||||||||||| Sbjct 28409635 AAAACGAATATATTTTTATC 28409616 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 2331 TTTTTATTGTTCAAATTTTCATCGAtttttttttttt 2367 ||||| || ||||||||||| ||| || |||| |||| Sbjct 29740648 TTTTTTTTTTTCAAATTTTC-TCGTTTATTTTATTTT 29740613 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2567 AATTAATCATGTTTATATGAAGGCT 2591 ||||||||||||||| ||| ||||| Sbjct 31797272 AATTAATCATGTTTACATGGAGGCT 31797248 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 408 aaaaaaaGAAATCTCTCTTTCTAAT 432 ||| || |||||||||||||||||| Sbjct 32960987 AAAGAATGAAATCTCTCTTTCTAAT 32961011 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 589 TTAGGGTTTTTTAATTTTGTTACTTCAAAAACC 621 |||||||||||||||||| | || ||||||| Sbjct 33641183 TTAGGGTTTTTTAATTTTTTGTCTCAAAAAACC 33641151 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 89.7 bits (98), Expect = 2e-15 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 1084 GGCACAGCAAGATCAAAACGGCCAAAGGGACACGAGATCGTAGGATGAGACTCTCGCTAG 1143 ||||||||||||| || || || ||| || | ||||| || |||||| | || || | Sbjct 13984787 GGCACAGCAAGATTAACACTGCGCGAGGACCAAGGGATCGGAGAATGAGATTGTCCCTTG 13984728 Query 1144 ATGTCGCCAAAGAGTTGTTTGGCTTACAAGACATGCTTGGATTTGACAAAGCCAGCAAAA 1203 | || ||| |||| || || | ||||||||||| || |||||||| || ||||| | Sbjct 13984727 AAGTTGCCCGCAAGTTTTTCGGTCTCCAAGACATGCTAGGCTTTGACAAGGCAAGCAAGA 13984668 Query 1204 CCGTTGAATGGTTGCTTACACAAGCAAAACCTGAGATCA 1242 |||| || ||| | || || |||||| ||| |||| Sbjct 13984667 CCGTCGAGTGGCTACTCCTGCAGGCAAAAGTTGAAATCA 13984629 Score = 87.8 bits (96), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 1074 AGAACGGACAGGCACAGCAAGATCAAAACGGCCAAAGGGACACGAGATCGTAGGATGAGA 1133 |||| ||||||||||||||||||| || || |||| | |||| ||||| ||||| Sbjct 286960 AGAA-GGACAGGCACAGCAAGATCTGTACAGCTCAAGGACCTAGAGACCGTAGAATGAGG 286902 Query 1134 CTCTCGCT--AGATGTCGCCAAAGAGTTGTTTGGCTTACAAGACATGCTTGGATTTGACA 1191 | || || |||| ||| | |||| |||| | ||||||||| | || ||||||| Sbjct 286901 TTGTCCCTTCAGATTGCGCGCA--AGTTCTTTGATCTTCAAGACATGTTAGGCTTTGACA 286844 Query 1192 AAGCCAGCAAAACCGTTGAATGG 1214 |||| ||||||||| |||| ||| Sbjct 286843 AAGCTAGCAAAACCATTGAGTGG 286821 Score = 44.6 bits (48), Expect = 0.057 Identities = 38/47 (81%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 1703 AAAGCTAGAGAAAGAGCAAAGGGTAGAACAATGGAGAAAATGATGAT 1749 || || |||| |||||||| || ||||||| | | ||||||||||| Sbjct 286574 AAGGCAAGAGCAAGAGCAAGGGAGAGAACAAGGAAAAAAATGATGAT 286528 Score = 44.6 bits (48), Expect = 0.057 Identities = 41/50 (82%), Gaps = 3/50 (6%) Strand=Plus/Minus Query 1538 AATTATATATAGAGTACTTTCTATCAAAATGTTACAAAAGATA-AATTAT 1586 |||||| ||| | || ||||||||||||| ||| ||||||| |||||| Sbjct 1861499 AATTATTTATTG--TATTTTCTATCAAAATTTTATGAAAGATATAATTAT 1861452 Score = 39.2 bits (42), Expect = 2.4 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Plus Query 571 CATTCTCAAAATTTTGTCTTAGGGTTTTTTAAT 603 ||||| || |||||| |||||||||||||| || Sbjct 14530302 CATTC-CATAATTTTCTCTTAGGGTTTTTTTAT 14530333 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1561 TCAAAATGTTACAAAAGATAAAT 1583 ||||||| ||||||||||||||| Sbjct 8489067 TCAAAATATTACAAAAGATAAAT 8489045 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1940 AAGAAAGATCACATTTCAAATGAAT 1964 ||||||| |||| |||||||||||| Sbjct 10983779 AAGAAAGGTCACTTTTCAAATGAAT 10983803 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 79 GAAAAATATATAAACAAAATAAATGCTTTTTCAA 112 |||||||||||||| ||||| ||| | |||||| Sbjct 13614691 GAAAAATATATAAAAAAAATTAAT--TATTTCAA 13614722 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 2327 ATGGTTTTTATTGTTCAAATTTTCATCGAt 2356 ||||||||||||| | |||| |||||||| Sbjct 15057539 ATGGTTTTTATTGCTTTAATTGTCATCGAT 15057510 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1162 TTGGCTTACAAGACATGCTTGGA 1184 ||| ||||||||||||||||||| Sbjct 17981394 TTGTCTTACAAGACATGCTTGGA 17981416 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 59.0 bits (64), Expect = 3e-06 Identities = 100/144 (69%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 1084 GGCACAGCAAGATCAAAACGGCCAAAGGGACACGAGATCGTAGGATGAGACTCTCGCTAG 1143 ||||||||||||| | ||| || | || | ||||| || ||||||| || | | Sbjct 4635582 GGCACAGCAAGATTTACACGTCCCAGGGCTTGAGGGATCGACGGGTGAGACTGTCCATTG 4635523 Query 1144 ATGTCGCCAAAGAGTTGTTTGGCTTACAAGACATGCTTGGATTTGACAAAGCCAGCAAAA 1203 | ||| |||| |||| | || |||||||| || ||||||||||| || ||| Sbjct 4635522 GGATTGCCCGCAAGTTCTTTGATCTCCAGGACATGCTAGGGTTTGACAAAGCTAGTCAAA 4635463 Query 1204 CCGTTGAATGGTTGCTTACACAAG 1227 || | || ||| |||| || |||| Sbjct 4635462 CCCTAGACTGGCTGCTGAC-CAAG 4635440 Score = 41.0 bits (44), Expect = 0.70 Identities = 32/36 (89%), Gaps = 2/36 (6%) Strand=Plus/Plus Query 2525 AGATATGTTAATCCATCTTATGtttttttttCTTAA 2560 ||||||||||| |||| || ||||||||||| |||| Sbjct 308947 AGATATGTTAAACCAT-TTTTGTTTTTTTTT-TTAA 308980 Score = 41.0 bits (44), Expect = 0.70 Identities = 35/42 (83%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 2203 TATATATAGTTTAATTAGAAGTTAGTTTTTGTGTTTTGTGGA 2244 |||||| ||||| |||||||||||| ||||| ||||| || Sbjct 27124846 TATATA-AGTTTGATTAGAAGTTAGGTTTTGACATTTGTAGA 27124806 Score = 41.0 bits (44), Expect = 0.70 Identities = 28/31 (90%), Gaps = 2/31 (6%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATAT--AAACAAAATAAA 101 ||||||||||||||||| ||| |||||||| Sbjct 28763320 AATTAAGAAAAATATATAGAAATAAAATAAA 28763350 Score = 39.2 bits (42), Expect = 2.4 Identities = 30/35 (86%), Gaps = 3/35 (9%) Strand=Plus/Minus Query 2188 TCGATTAATTAATGC---TATATATAGTTTAATTA 2219 || ||||||||||| ||||||||||||||||| Sbjct 1553728 TCTATTAATTAATGTATATATATATAGTTTAATTA 1553694 Score = 39.2 bits (42), Expect = 2.4 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 20 CACATTTTCACaaaaaacaaa 40 ||||||||||||||||||||| Sbjct 7088863 CACATTTTCACAAAAAACAAA 7088883 Score = 39.2 bits (42), Expect = 2.4 Identities = 34/41 (83%), Gaps = 1/41 (2%) Strand=Plus/Plus Query 2060 TTATATCTACGAGTCACATTTATAATTTTTATGAGtttttt 2100 |||| | ||| | ||| ||||||||||| ||||| |||||| Sbjct 15333824 TTATTTTTACTATTCA-ATTTATAATTTATATGATTTTTTT 15333863 Score = 39.2 bits (42), Expect = 2.4 Identities = 40/50 (80%), Gaps = 3/50 (6%) Strand=Plus/Minus Query 413 aaGAAATCTCTCTTTCTAATTTTCTTGTTTTCATTTT-GGTTGAGACTTG 461 ||||| ||| | ||| | ||||||| |||||||||| ||| |||| ||| Sbjct 34530863 AAGAATTCTTTTTTTTT--TTTTCTTTTTTTCATTTTGGGTAGAGATTTG 34530816 Score = 39.2 bits (42), Expect = 2.4 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 419 TCTCTCTTTCTAATTTTCTTGTTTTCATTTT 449 ||||||||||||| |||||| || ||||||| Sbjct 35447327 TCTCTCTTTCTAA-TTTCTTCTTGTCATTTT 35447298 Score = 39.2 bits (42), Expect = 2.4 Identities = 25/26 (96%), Gaps = 1/26 (4%) Strand=Plus/Plus Query 1741 AATGATGATGAAGATG-AAAGGAAGA 1765 |||||||||||||||| ||||||||| Sbjct 36089394 AATGATGATGAAGATGCAAAGGAAGA 36089419 Score = 39.2 bits (42), Expect = 2.4 Identities = 52/69 (75%), Gaps = 9/69 (13%) Strand=Plus/Minus Query 380 ttttttttCTTGATTTTGCAGGCTAAGGaaaaa---aaGAAATC--TCTCTTTCTAATTT 434 || |||| ||||||||| || ||||||| | || |||| ||||||||||| || Sbjct 43698717 TTATTTTACTTGATTTT-CA---TAAGGAAGATGATAATAAATGAATCTCTTTCTAAATT 43698662 Query 435 TCTTGTTTT 443 |||| |||| Sbjct 43698661 TCTTTTTTT 43698653 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 423 TCTTTCTAATTTTCTTGTTTTCA 445 |||||||||||||||||| |||| Sbjct 925471 TCTTTCTAATTTTCTTGTGTTCA 925493 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 76 TAAGAAAAATATATAAACAAAAT 98 ||| ||||||||||||||||||| Sbjct 1198658 TAAAAAAAATATATAAACAAAAT 1198636 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 2647 GTATAATATTTTGTTTTCATAGTTCGAGTGGATTTTT 2683 |||| ||||||||||||||| || ||| || ||||| Sbjct 2424576 GTATTATATTTTGTTTTCATTCTTTGAG-GGCTTTTT 2424541 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 14 TATTATCACATTTTCACaaaaaa 36 |||||||||||||| |||||||| Sbjct 6807488 TATTATCACATTTTTACAAAAAA 6807466 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 2229 TTTTGTGTTTTGTGGATTGGTACTTGGTTA 2258 || || ||||| ||| |||||||||||||| Sbjct 6920738 TTATGAGTTTTCTGGTTTGGTACTTGGTTA 6920709 Score = 37.4 bits (40), Expect = 8.5 Identities = 40/52 (77%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 1352 CTTCTATGAAtttttttATATC-ATAATCTGAAAATTGTAAATTTCCTAATT 1402 ||||| | ||||||||| || ||| ||| | |||||||||||||| || Sbjct 16092000 CTTCTTTCTATTTTTTTAAATATATATTCTATATTTTGTAAATTTCCTAGTT 16091949 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/43 (79%), Gaps = 4/43 (9%) Strand=Plus/Minus Query 416 AAATCTCTCTTTCTAATTTTCTTGTTT----TCATTTTGGTTG 454 ||||| | || |||| ||||||||||| | |||||||||| Sbjct 16961408 AAATCACCCTCTCTATTTTTCTTGTTTGGTATGATTTTGGTTG 16961366 Score = 37.4 bits (40), Expect = 8.5 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 2681 TTTAACTGATATGTATCCTTTAAACGTTGTTTGTTAATAT 2720 ||||||| | ||||| ||||| ||| ||||||||||| Sbjct 21073760 TTTAACTACTTAGTATCTATTAAAAGTTTTTTGTTAATAT 21073721 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 582 TTTTGTCTTAGGGTTTTTTAATTTT 606 ||| |||||||||||||||| |||| Sbjct 21105482 TTTAGTCTTAGGGTTTTTTAGTTTT 21105506 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATAAACAAAA 97 |||||||||| || ||||||||||| Sbjct 23027042 AATTAAGAAATATTTATAAACAAAA 23027018 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATAT-AAACAAAATAAA 101 ||| ||||||||||||| ||| |||||||| Sbjct 26005932 AATAAAGAAAAATATATGAAATAAAATAAA 26005903 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 77 AAGAAAAAT--ATATAAACAAAATAAATG 103 || |||||| |||||||||||||||||| Sbjct 28507067 AAAAAAAATTAATATAAACAAAATAAATG 28507039 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1694 GAGAGAGCGAAAGCTAGAGAAAGAG 1718 ||||||| |||||||||||| |||| Sbjct 32182420 GAGAGAGAGAAAGCTAGAGAGAGAG 32182444 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Plus Query 1373 CATAATCTGAAAATTGTAAATTTCCTAATTAATTAAG 1409 |||| ||| |||||||||||| || | ||||||||| Sbjct 35007697 CATACTCT-AAAATTGTAAATATCATTTTTAATTAAG 35007732 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 2713 GTTAATATTATCTCTGTGTTGTTAAGTTTGTCT 2745 |||||||||||||| || ||||||||| ||| Sbjct 35640886 GTTAATATTATCTCATTGGAGTTAAGTTTATCT 35640918 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1711 AGAAAGAGCAAAGGGTAGAACAATGGAGAAAATGATGA 1748 ||||||| | | || |||||||||||| ||| ||||| Sbjct 35794273 AGAAAGAAGATAAGGAAGAACAATGGAGGAAAAGATGA 35794310 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1813 GATAATAAAGAATAATAATAGAA 1835 ||||||||| ||||||||||||| Sbjct 40809687 GATAATAAAAAATAATAATAGAA 40809709 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1892 CTTTGCAAGAACGATCGTTTTGCAG 1916 |||||||||||||||| |||| ||| Sbjct 41253346 CTTTGCAAGAACGATCCTTTTCCAG 41253370 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 57.2 bits (62), Expect = 9e-06 Identities = 48/59 (81%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1685 TCCAAGGAGGAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTAGAACAATGGAGAAAAT 1743 ||||| ||| ||||||||| || ||||||||||||| || || |||| ||| ||||| Sbjct 3116595 TCCAAAGAGTCGAGAGCGAAGGCAAGAGAAAGAGCAAGGGAAAGGACAAGGGAAAAAAT 3116537 Score = 53.6 bits (58), Expect = 1e-04 Identities = 73/102 (72%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1119 GATCGTAGGATGAGACTCTCGCTAGATGTCGCCAAAGAGTTGTTTGGCTTACAAGACATG 1178 ||||| ||| ||||||| || | ||||| |||| |||| | || |||||| Sbjct 3116910 GATCGAAGGGTGAGACTTTCCACTGGGATCGCCCGCAAGTTCTTTGATCTCCAGGACATG 3116851 Query 1179 CTTGGATTTGACAAAGCCAGCAAAACCGTTGAATGGTTGCTT 1220 | || ||||||||||| || ||||||| || ||||| ||| Sbjct 3116850 TTAGGGTTTGACAAAGCTAGTCAAACCGTAGACTGGTTACTT 3116809 Score = 46.4 bits (50), Expect = 0.016 Identities = 33/38 (87%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 2331 TTTTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||||| || |||||||||||| | ||||||||||||| Sbjct 6160768 TTTTTTTTTTTCAAATTTTCAAGGTTTTTTTTTTTTTT 6160805 Score = 42.8 bits (46), Expect = 0.20 Identities = 43/56 (77%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2317 TTATACTATTATGGTTTTTATTGTTCAAATTTTCATCGAtttttttttttttGGGG 2372 |||| ||||| | |||| ||||||||||| | ||||||||||||||||| Sbjct 14320590 TTATTCTATTGTTTCTTTTTTTGTTCAAATTGGTTGTGTTTTTTTTTTTTTTGGGG 14320645 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 593 GGTTTTTTAATTT-TGTTACTTCAAAAA 619 |||||| |||||| |||||||||||||| Sbjct 14583785 GGTTTTATAATTTATGTTACTTCAAAAA 14583758 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1567 TGTTACAAAAGATAAATTATCTTATA 1592 ||| |||||||||||||||| ||||| Sbjct 17041254 TGTCACAAAAGATAAATTATGTTATA 17041279 Score = 39.2 bits (42), Expect = 2.4 Identities = 46/63 (73%), Gaps = 7/63 (11%) Strand=Plus/Minus Query 1338 ATTCAAGTTTTCAACTTCTATGAAtttttttATATCATAATCTGAAAATTGTAAATTTCC 1397 |||||| |||| ||||| |||| ||| || || |||| | ||| ||||||||| Sbjct 17665998 ATTCAAATTTTTAACTT-------TTTTATTAAATTATTATCTAATTATTATAAATTTCC 17665946 Query 1398 TAA 1400 ||| Sbjct 17665945 TAA 17665943 Score = 39.2 bits (42), Expect = 2.4 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 2633 AATTAATGCAATTTGTATAATATTTTGTTTT 2663 |||||||||||| || || ||||||||||| Sbjct 23010752 AATTAATGCAATATGCATCGTATTTTGTTTT 23010782 Score = 39.2 bits (42), Expect = 2.4 Identities = 38/46 (83%), Gaps = 5/46 (11%) Strand=Plus/Minus Query 2483 AACATTAAT-AT---CTCAAATTAATGATATATAGTTTGGTGAGAG 2524 ||||||||| || || ||| || |||||||| |||||||||||| Sbjct 24628280 AACATTAATCATGGACTGAAAATA-TGATATATGGTTTGGTGAGAG 24628236 Score = 39.2 bits (42), Expect = 2.4 Identities = 29/34 (85%), Gaps = 4/34 (12%) Strand=Plus/Minus Query 1551 GTACTTTCTATCAAAATGTTACAAAAGATAAATT 1584 ||||||| ||||||||||| ||||||||||| Sbjct 31066519 GTACTTTTTATCAAAATGT----AAAGATAAATT 31066490 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 2478 CATTTAACATTAATATCTCAAATTAAT 2504 |||||||||||||||| |||| ||||| Sbjct 699972 CATTTAACATTAATAT-TCAAGTTAAT 699997 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 2684 AACTGATATGTATCCTTTAAACGTTGT-TTGTTAATATTATC 2724 |||||||||||| | |||| | ||| | || ||| ||||||| Sbjct 1665703 AACTGATATGTAACTTTTAGATGTTATATTATTATTATTATC 1665662 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 2475 TTTCATTTAACATTAATATCTCAAATTAATGATATATA 2512 ||| | |||| |||||||| | ||| ||||||||||| Sbjct 2674122 TTTTAATTAAAATTAATATTTTAAAAAAATGATATATA 2674159 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2078 TTTATAATTTTTATGAGtttttttC 2102 |||||||||||||| | |||||||| Sbjct 3666192 TTTATAATTTTTATAATTTTTTTTC 3666168 Score = 37.4 bits (40), Expect = 8.5 Identities = 32/39 (82%), Gaps = 2/39 (5%) Strand=Plus/Plus Query 77 AAGAAAAATATATAAAC--AAAATAAATGCTTTTTCAAA 113 |||||||||||| |||| |||||||| | ||||||| Sbjct 3755884 AAGAAAAATATAAAAACATAAAATAAAATGTCTTTCAAA 3755922 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1242 ATAAAGATCGCGACAACCCTTTCTC 1266 ||||||| | ||||||||||||||| Sbjct 4110546 ATAAAGACCTCGACAACCCTTTCTC 4110522 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1815 TAATAAAGAATAATAATAGAAGCCAAGTGA 1844 |||||| |||||||||||||||| || || Sbjct 5433365 TAATAATAAATAATAATAGAAGCCTAGAGA 5433394 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1727 AGAACAATGGAGAAAATGATGATGAAGATGAAA 1759 |||| | || |||||||| ||||||||||||| Sbjct 6975209 AGAAAGAAGGCGAAAATGAAGATGAAGATGAAA 6975241 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAATAAATGCT 105 |||| | ||||||||||||| |||||| || || Sbjct 7766833 AATTTAAAAAAATATATAAAAAAAATACATACT 7766865 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATA 99 |||| ||||||||||||||| |||| Sbjct 9665961 TTAAAAAAAATATATAAACATAATA 9665985 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 2/32 (6%) Strand=Plus/Plus Query 1733 ATGGAGAAAATGATGATGAAGATGA--AAGGA 1762 |||||||| |||| ||||||||||| ||||| Sbjct 10632869 ATGGAGAATATGAAGATGAAGATGATGAAGGA 10632900 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 1619 GATGGGAGATCGATGAGAGGGAAGAGAAAGAG 1650 |||| |||| |||||||||| |||||||||| Sbjct 12587119 GATGAGAGAGAGATGAGAGGG-AGAGAAAGAG 12587149 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2191 ATTAATTAATGCTATATATAGTT 2213 ||||||||||| ||||||||||| Sbjct 12761390 ATTAATTAATGTTATATATAGTT 12761368 Score = 37.4 bits (40), Expect = 8.5 Identities = 35/45 (78%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1080 GACAGGCACAGCAAGATCAAAACGGCCAAAGGGACACGAGATCGT 1124 ||||||||||||||| || | ||| | ||||| | || || ||| Sbjct 17067423 GACAGGCACAGCAAGGTCTACACGTCGAAAGGTCCCCGGGACCGT 17067467 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 1690 GGAGGAGAGAGCGAAAGCTAGAGAAAGAGCAAAGG 1724 ||||||||||| || || ||||| ||||| |||| Sbjct 19204149 GGAGGAGAGAGAGAGAGAGAGAGATAGAGCTAAGG 19204115 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 2215 AATTAGAAGTTAGTTTTTGTGTTTTGT 2241 |||| ||| |||||||||||||||||| Sbjct 21353397 AATTTGAA-TTAGTTTTTGTGTTTTGT 21353422 Score = 37.4 bits (40), Expect = 8.5 Identities = 37/48 (77%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 2194 AATTAATGCTATATATAGTTTAATTAGAAGTTAGTTTTTGTGTTTTGT 2241 |||||| ||| | || | ||||||||||||||| || |||| ||| Sbjct 23206412 AATTAAAACTAGACCTATTATAATTAGAAGTTAGTATTGTTGTTATGT 23206365 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATA-AACAAAATAAATGC 104 || |||||||||||||| | ||||||||||| Sbjct 28332790 ATGAAGAAAAATATATAGAGGAAAATAAATGC 28332821 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1740 AAATGATGATGAAGATGAAA 1759 |||||||||||||||||||| Sbjct 33993575 AAATGATGATGAAGATGAAA 33993556 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2465 TTGAAACTGATTTCATTTAACAT 2487 ||||||||||||||||||| ||| Sbjct 35640188 TTGAAACTGATTTCATTTAGCAT 35640210 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 421 TCTCTTTCTAATTTTCTTGTTTT 443 ||||||||||||||| ||||||| Sbjct 36666453 TCTCTTTCTAATTTTTTTGTTTT 36666431 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 48.2 bits (52), Expect = 0.005 Identities = 46/59 (78%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 129 CCTTCCCCCATAATGAtctctttgcctctctctccatatagctctccctctctctctct 187 ||||||||||| || |||| | ||||||||| | | ||||| |||||||||||| Sbjct 37666045 CCTTCCCCCATCATCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 37665987 Score = 44.6 bits (48), Expect = 0.057 Identities = 27/29 (93%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAATAAA 101 |||||| ||||||||||||| |||||||| Sbjct 13425163 AATTAAAAAAAATATATAAATAAAATAAA 13425191 Score = 41.0 bits (44), Expect = 0.70 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Minus Query 1694 GAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTAGAA 1730 ||||||| || || ||||| |||||||||||| ||| Sbjct 786106 GAGAGAGAGAGAGAGAGAGAGAGAGCAAAGGGTTGAA 786070 Score = 41.0 bits (44), Expect = 0.70 Identities = 37/45 (82%), Gaps = 4/45 (9%) Strand=Plus/Plus Query 2324 ATTATGGTTTTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||||||||||||||| |||| ||| ||||||||||||||| Sbjct 24889710 ATTATGGTTTTTATT-TTCATGTTT---GGGATTTTTTTTTTTTT 24889750 Score = 39.2 bits (42), Expect = 2.4 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 2627 TGAAGAAATTAATGCAATTTGTATAATATTT 2657 |||| ||||| ||||||||||| ||| |||| Sbjct 523818 TGAACAAATTTATGCAATTTGTTTAAAATTT 523848 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 414 AGAAATCTCTCTTTCTAATTTTCTTGTTT 442 |||||| ||||||||||||||| || ||| Sbjct 2565141 AGAAATGTCTCTTTCTAATTTTTTTTTTT 2565169 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1626 GATCGATGAGAGGGAAGAGAAAGAGG 1651 ||||||||||||||||| || ||||| Sbjct 7416781 GATCGATGAGAGGGAAGCGAGAGAGG 7416806 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1738 GAAAATGATGATGAAGATGAAAGGAA 1763 |||||||||||||| |||||||| || Sbjct 8514069 GAAAATGATGATGATGATGAAAGAAA 8514044 Score = 39.2 bits (42), Expect = 2.4 Identities = 29/33 (88%), Gaps = 2/33 (6%) Strand=Plus/Minus Query 292 TATTCTCTCTCTACACATTTAGACACACACATA 324 ||||||||||||||||| | ||||||||||| Sbjct 8651626 TATTCTCTCTCTACACA--CACACACACACATA 8651596 Score = 39.2 bits (42), Expect = 2.4 Identities = 37/47 (79%), Gaps = 4/47 (9%) Strand=Plus/Minus Query 2320 TACTATTATGGTTTTTATTGTTCAAATTTTCATCGAttttttttttt 2366 |||| || | ||||||||||| ||||||| |||||| |||||| Sbjct 10952224 TACTGTTTTTATTTTTATTGTTAAAATTTT----GATTTTGTTTTTT 10952182 Score = 39.2 bits (42), Expect = 2.4 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 2297 GttttttttAACTGACTTGGT 2317 ||||||||||||||||||||| Sbjct 20672164 GTTTTTTTTAACTGACTTGGT 20672184 Score = 39.2 bits (42), Expect = 2.4 Identities = 41/53 (77%), Gaps = 6/53 (11%) Strand=Plus/Minus Query 2543 TATGtttttttttC----TTAACATCGTAATTAATCATGTTTATATGAAGGCT 2591 |||||||| ||||| ||| || |||||| | ||||||||||||| ||| Sbjct 23610163 TATGTTTTGTTTTCACGGTTACCAC--TAATTATTTATGTTTATATGAACGCT 23610113 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1390 AAATTTCCTAATTAATTAAGGACCGGTGTTAGG 1422 |||| ||||||||||||| ||| | ||||||| Sbjct 6775057 AAATATCCTAATTAATTATGGAGCAATGTTAGG 6775025 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 1737 AGAAAATGATGATGAAGATGAAA 1759 ||||||||| ||||||||||||| Sbjct 9343184 AGAAAATGAAGATGAAGATGAAA 9343206 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 13528344 AACAAAAATATATAAACCAAATAAA 13528320 Score = 37.4 bits (40), Expect = 8.5 Identities = 35/43 (81%), Gaps = 4/43 (9%) Strand=Plus/Plus Query 1560 ATCAAAATGTTACAAAAGATAAATTAT-CTTATACATTAGAAA 1601 |||||||| ||| |||| ||| ||| ||| ||||||||||| Sbjct 14996518 ATCAAAATATTAAAAAA---AAAATATACTTTTACATTAGAAA 14996557 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2644 TTTGTATAATATTTTGTTTT 2663 |||||||||||||||||||| Sbjct 15337996 TTTGTATAATATTTTGTTTT 15337977 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 2331 TTTTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||||| || ||||||||||| | |||| |||||||| Sbjct 17486716 TTTTTTTTTTTCAAATTTTCTTTTCTTTTCTTTTTTTT 17486679 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/42 (81%), Gaps = 1/42 (2%) Strand=Plus/Minus Query 1315 CATTCTTTTCT-AGTTTTAAGTCTATTCAAGTTTTCAACTTC 1355 ||| |||| || | |||||| | ||||||||||||||| || Sbjct 20780609 CATGCTTTACTCATTTTTAATCCCATTCAAGTTTTCAACATC 20780568 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 74 ATTAAGAAAAATATATAAACA-AAATAAAT 102 ||||||||||| ||||||| | |||||||| Sbjct 27608177 ATTAAGAAAAAAATATAAATATAAATAAAT 27608148 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 2638 ATGCAATTT-GTATAATATTTTGTTTTCAT 2666 ||||| ||| ||||||||||||||||| || Sbjct 28144084 ATGCAGTTTAGTATAATATTTTGTTTTTAT 28144113 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1991 AACTCATCATTCCCAGTGAT 2010 |||||||||||||||||||| Sbjct 30754422 AACTCATCATTCCCAGTGAT 30754403 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 408 aaaaaaaGAAATCTCTCTTTCTAAT 432 |||||||||||||||||| || ||| Sbjct 33007023 AAAAAAAGAAATCTCTCTCTCAAAT 33007047 Score = 37.4 bits (40), Expect = 8.5 Identities = 36/44 (82%), Gaps = 2/44 (5%) Strand=Plus/Minus Query 2078 TTTATAATTTT-TATGAGtttttttCCAATGGTTTTATCTAAAG 2120 |||||| || | || || |||||| ||||| |||||||||||| Sbjct 35109193 TTTATATTTGTATAGGA-TTTTTTACCAATTTTTTTATCTAAAG 35109151 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2078 TTTATAATTTTTATGAGtttttttC 2102 |||||||||||||| | |||||||| Sbjct 37339651 TTTATAATTTTTATAATTTTTTTTC 37339675 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2078 TTTATAATTTTTATGAGtttttttC 2102 |||||||||||||| | |||||||| Sbjct 37396442 TTTATAATTTTTATAATTTTTTTTC 37396466 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 46.4 bits (50), Expect = 0.016 Identities = 31/35 (89%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 2334 TTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||||| || ||||||||||| ||||||||||||| Sbjct 29648735 TTATTATTTAAATTTTCATCTTTTTTTTTTTTTTT 29648769 Score = 44.6 bits (48), Expect = 0.057 Identities = 36/44 (82%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 2325 TTATGGTTTTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||||||||||| | ||| |||||||| ||||||||||||| Sbjct 31457195 TTATGGTTTTTTATCTTCTTCTTTTCATCTTTTTTTTTTTTTTT 31457238 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAA 101 ||||| ||||||||||||| |||||||| Sbjct 915461 ATTAA-AAAAATATATAAAAAAAATAAA 915487 Score = 39.2 bits (42), Expect = 2.4 Identities = 25/26 (96%), Gaps = 1/26 (4%) Strand=Plus/Minus Query 1532 ATTTACAATTATATATAGAGTACTTT 1557 ||||||||||||||||| |||||||| Sbjct 2598441 ATTTACAATTATATATA-AGTACTTT 2598417 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 1329 TTTAAGTCTATTCAAGTTTTCAACTT 1354 || |||||||||||| |||||||||| Sbjct 8259532 TTAAAGTCTATTCAAATTTTCAACTT 8259557 Score = 39.2 bits (42), Expect = 2.4 Identities = 27/30 (90%), Gaps = 2/30 (7%) Strand=Plus/Plus Query 2195 ATTAATG--CTATATATAGTTTAATTAGAA 2222 ||||||| |||||||||||| |||||||| Sbjct 11145875 ATTAATGATCTATATATAGTTAAATTAGAA 11145904 Score = 39.2 bits (42), Expect = 2.4 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAAT 98 ||||||||||| |||||||||||| Sbjct 18419412 TTAAGAAAAATTTATAAACAAAAT 18419435 Score = 39.2 bits (42), Expect = 2.4 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 598 TTTAATTTTGTTACTTCAAAA 618 ||||||||||||||||||||| Sbjct 23631437 TTTAATTTTGTTACTTCAAAA 23631417 Score = 39.2 bits (42), Expect = 2.4 Identities = 40/51 (78%), Gaps = 5/51 (10%) Strand=Plus/Plus Query 2612 AATATTA-AACCTATGTGAAGAAATTAATGCAATTTGTATAATATTTTGTT 2661 ||||| | || |||| ||| ||||||| | ||| |||||||||||||| Sbjct 32322677 AATATGACAAACTATATGATGAAATTATT----TTTATATAATATTTTGTT 32322723 Score = 39.2 bits (42), Expect = 2.4 Identities = 31/37 (84%), Gaps = 3/37 (8%) Strand=Plus/Minus Query 70 AGGAATTAAGAAAAATATATAAACAA---AATAAATG 103 || ||| || |||||||||||||||| |||||||| Sbjct 33622916 AGAAATGAATAAAAATATATAAACAATGCAATAAATG 33622880 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||| ||||||||||||| Sbjct 8732790 AAAAAAAATATTTAAACAAAATAAA 8732766 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 70 AGGAATTAAGAAAAATATAT--AAACAAAATAAA 101 || ||| ||||||||||||| ||| |||||||| Sbjct 9723047 AGAAATAAAGAAAAATATATAGAAATAAAATAAA 9723014 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1816 AATAAAGAATAATAATAGAAGCCAA 1840 ||||||||||||||| ||||| ||| Sbjct 14052503 AATAAAGAATAATAAAAGAAGACAA 14052527 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 2333 TTTATTGTTCAAATTTTCATCGAtttttttttttt 2367 ||| || |||||||||||| |||||||||||| Sbjct 18799119 TTTTTTCGTCAAATTTTCATTTTTTTTTTTTTTTT 18799085 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1694 GAGAGAGCGAAAGCTAGAGAAAGAG 1718 ||||||| |||||||||||| |||| Sbjct 22287931 GAGAGAGAGAAAGCTAGAGAGAGAG 22287955 Score = 37.4 bits (40), Expect = 8.5 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 396 TGCAGGCTAAGGaaa-aaaaGAAAT 419 ||||||||||||||| ||||||||| Sbjct 24998068 TGCAGGCTAAGGAAAGAAAAGAAAT 24998044 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 29 ACaaaaaacaaaaaCGAATATATTTTTATCATGCC 63 |||||| ||||||| ||||||||||| | |||| Sbjct 26777096 ACAAAATACAAAAATCAATATATTTTTTTACTGCC 26777062 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 77 AAGAAAAATATATAAACAAAATAAA 101 |||||||||||||||| |||| ||| Sbjct 36919310 AAGAAAAATATATAAAAAAAAAAAA 36919334 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 44.6 bits (48), Expect = 0.057 Identities = 27/29 (93%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAATAAA 101 ||| |||||||||||||||| |||||||| Sbjct 9891569 AATAAAGAAAAATATATAAAAAAAATAAA 9891597 Score = 41.0 bits (44), Expect = 0.70 Identities = 38/48 (79%), Gaps = 3/48 (6%) Strand=Plus/Plus Query 2619 AACCTATGT---GAAGAAATTAATGCAATTTGTATAATATTTTGTTTT 2663 |||| |||| |||||||||||| |||| | ||||| |||||||| Sbjct 13013879 AACCCATGTATCGAAGAAATTAATATTATTTTTCTAATAATTTGTTTT 13013926 Score = 41.0 bits (44), Expect = 0.70 Identities = 35/43 (81%), Gaps = 3/43 (7%) Strand=Plus/Plus Query 2623 TATGTGAAGAAATTAATGCAATTTGTATAATATTTTGTTTTCA 2665 ||| | ||||||| ||| |||||||||||||||| || ||| Sbjct 17717211 TATTTTAAGAAATAAAT---ATTTGTATAATATTTTATTATCA 17717250 Score = 41.0 bits (44), Expect = 0.70 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 2083 AATTTTTATGAGtttttttCCAATGGTTTTATCTA 2117 ||||||||||| ||||| |||||| |||||| || Sbjct 20859457 AATTTTTATGAAATTTTTACCAATGTTTTTATATA 20859423 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 426 TTCTAATTTTCTTGTTTTCATTTTGGTT 453 || ||||||||||| ||||||||||||| Sbjct 17253523 TTTTAATTTTCTTG-TTTCATTTTGGTT 17253497 Score = 39.2 bits (42), Expect = 2.4 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1695 AGAGAGCGAAAGCTAGAGAAAGAG 1718 |||||| ||||||||||||||||| Sbjct 18398926 AGAGAGAGAAAGCTAGAGAAAGAG 18398903 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1817 ATAAAGAATAATAATAGAAGCCA 1839 ||||||||||||||||||| ||| Sbjct 5837744 ATAAAGAATAATAATAGAAACCA 5837722 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAA-AATAAA 101 ||| |||||||||||||||| || |||||| Sbjct 9492245 AATAAAGAAAAATATATAAAAAATAATAAA 9492274 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 72 GAATTAAGAAAAATATATAA-ACAAAATAAAT 102 ||| ||||||||||| |||| || |||||||| Sbjct 12297537 GAAGTAAGAAAAATAGATAACACGAAATAAAT 12297568 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Plus Query 1016 TTCCCAGAGAATCTCAACTTCT--CAAGA 1042 |||||||||||||||| ||||| ||||| Sbjct 12548555 TTCCCAGAGAATCTCACCTTCTACCAAGA 12548583 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 2483 AACATTAATATCTCAAATTAATGATATATA 2512 || ||| |||||||||||||| |||||||| Sbjct 16859817 AATATTTATATCTCAAATTAA-GATATATA 16859845 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1025 AATCTCAACTTCTCAAGACCCaaaa 1049 || ||| |||||||||||||||||| Sbjct 18485391 AAACTCGACTTCTCAAGACCCAAAA 18485367 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 77 AAGAAAAATATATAAACAAAATAAA 101 ||||||||||||||||| |||| || Sbjct 19122021 AAGAAAAATATATAAACTAAATCAA 19122045 Score = 37.4 bits (40), Expect = 8.5 Identities = 33/41 (80%), Gaps = 3/41 (7%) Strand=Plus/Plus Query 2075 ACATTTATAATTTTTATGAG---tttttttCCAATGGTTTT 2112 ||||||| |||||||||||| |||||| |||| |||| Sbjct 19884749 ACATTTAAAATTTTTATGAGAACTTTTTTAGCAATTTTTTT 19884789 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 792 CATCTTGACCATCATCATCAATTCCAACAACCT 824 ||||||| |||||||||||| | | ||||||| Sbjct 22438054 CATCTTGGCCATCATCATCACTGCTGACAACCT 22438022 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 44.6 bits (48), Expect = 0.057 Identities = 27/29 (93%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 2611 AAATATTAAACCTATGTGAAGAAATTAAT 2639 |||||| ||||||||||||| |||||||| Sbjct 33315303 AAATATAAAACCTATGTGAAAAAATTAAT 33315275 Score = 42.8 bits (46), Expect = 0.20 Identities = 26/28 (93%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 1691 GAGGAGAGAGCGAAAGCTAGAGAAAGAG 1718 |||||||||| |||||||||||| |||| Sbjct 31708365 GAGGAGAGAGAGAAAGCTAGAGAGAGAG 31708338 Score = 41.0 bits (44), Expect = 0.70 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1811 GAGATAATAAAGAATAATAATAGAA 1835 ||||||||||| ||||||||||||| Sbjct 6226086 GAGATAATAAATAATAATAATAGAA 6226110 Score = 41.0 bits (44), Expect = 0.70 Identities = 45/57 (79%), Gaps = 5/57 (9%) Strand=Plus/Plus Query 45 AATATATTTTTATCATG--CCGAAGCTAGGAATTAAGAAAAATATATAAACAAAATA 99 ||||||||||||| ||| || | | | | || | |||||||||||||||||||| Sbjct 19929763 AATATATTTTTATTATGGGCCTCA-CAACG--TTCACAAAAATATATAAACAAAATA 19929816 Score = 41.0 bits (44), Expect = 0.70 Identities = 39/50 (78%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 1691 GAGGAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTAGAACAATGGAGAA 1740 ||||||||||||| || ||||| |||| |||| | ||| | |||| || Sbjct 26928779 GAGGAGAGAGCGAGAGAGAGAGAGAGAGGAAAGAATCGAAAACTGGAAAA 26928828 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAA 101 ||||| ||||||||||||| |||||||| Sbjct 2138531 ATTAA-AAAAATATATAAAAAAAATAAA 2138557 Score = 39.2 bits (42), Expect = 2.4 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 423 TCTTTC-TAATTTTCTTGTTTTCATTTTGGTTG 454 |||||| ||||||| ||||||||||| | |||| Sbjct 2869952 TCTTTCGTAATTTTATTGTTTTCATTGTAGTTG 2869920 Score = 39.2 bits (42), Expect = 2.4 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 1729 AACAATGGA-GAAAATGATGATGAAGATGAA 1758 ||||||| | ||||||||||||||| ||||| Sbjct 23905078 AACAATGTACGAAAATGATGATGAATATGAA 23905048 Score = 39.2 bits (42), Expect = 2.4 Identities = 36/45 (80%), Gaps = 2/45 (4%) Strand=Plus/Plus Query 69 TAGGAATTAAGAAAAATA--TATAAACAAAATAAATGCTTTTTCA 111 || ||||||||||||||| ||||| |||||||| |||||| Sbjct 32543404 TAAGAATTAAGAAAAATAGTAATAAATTCAATAAATGGATTTTCA 32543448 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 447819 AATAAAAATATATAAACCAAATAAA 447795 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2629 AAGAAATTAATGCAATTTGTATAATATTTT 2658 || || ||||||||||||||||| ||||| Sbjct 1313679 AACAATTTAATGCAATTTGTATATGATTTT 1313708 Score = 37.4 bits (40), Expect = 8.5 Identities = 32/40 (80%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 2540 TCTTATGtttttttttCTTAACATCGTAATTAATCATGTT 2579 ||| || ||||||||| || | | |||||||||||||| Sbjct 5776841 TCTAATTTTTTTTTTTTTTGAATTTATAATTAATCATGTT 5776880 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 76 TAAGAAAAATATATAAACAAAATAA 100 ||| ||||||||||||| ||||||| Sbjct 9170076 TAAAAAAAATATATAAAAAAAATAA 9170100 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 2474 ATTTCATTTAACATTAATATCTCAAATTAATG 2505 ||| |||||||||||||||| | | ||||||| Sbjct 14632097 ATTCCATTTAACATTAATAT-TAACATTAATG 14632067 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 72 GAATTAAGAAAAATATATAAACAAAATAAA 101 ||||||| ||||||||||||| ||| |||| Sbjct 18398187 GAATTAA-AAAAATATATAAAAAAATTAAA 18398215 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1339 TTCAAGTTTTCAACTTCTATGAAttttttt 1368 |||||||||||| ||||| | |||||||| Sbjct 23314762 TTCAAGTTTTCATCTTCTTTTCATTTTTTT 23314733 Score = 37.4 bits (40), Expect = 8.5 Identities = 47/62 (76%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 2574 CATGTTTATATGAAGGCTTTTTCGTCATTTTAGTGTCAAATATTAAACCTATGTGAAGAA 2633 |||||||||||||| ||||| | ||||| ||| | |||||| |||| ||| ||| Sbjct 23630672 CATGTTTATATGAATTTTTTTTTTGGAGATTAGTTTCATA-ATTAAAGCTAT-TGATGAA 23630729 Query 2634 AT 2635 || Sbjct 23630730 AT 23630731 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 910 AAACCATCCCAAACGACAATC-ATCAT 935 ||||||||||||||| ||||| ||||| Sbjct 25598860 AAACCATCCCAAACGTCAATCTATCAT 25598834 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 44.6 bits (48), Expect = 0.057 Identities = 26/27 (96%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATAAA 101 ||||||||||||||||||| ||||||| Sbjct 27271040 TTAAGAAAAATATATAAACCAAATAAA 27271066 Score = 41.0 bits (44), Expect = 0.70 Identities = 40/51 (78%), Gaps = 2/51 (4%) Strand=Plus/Minus Query 790 ATCATCTTGACCATCATCATCAATTCCAACAACCTTCTCCTTTTTCTCACT 840 |||||| | | |||||||||||| | ||| |||||||| |||||| || Sbjct 2829602 ATCATCATCATCATCATCATCAAATATAAC--TCTTCTCCTCTTTCTCGCT 2829554 Score = 41.0 bits (44), Expect = 0.70 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 1321 TTTCTAGTTTTAAGTCTATTCAAGTTTTCA 1350 |||||||| | |||||||||||| |||||| Sbjct 35066998 TTTCTAGTCTAAAGTCTATTCAATTTTTCA 35066969 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 76 TAAGAAAAATATATAAACAAAATAAA 101 ||||||||||| ||||||||||| || Sbjct 1390148 TAAGAAAAATAAATAAACAAAATTAA 1390123 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAA 101 ||||| ||||||||||||| |||||||| Sbjct 8394390 ATTAA-AAAAATATATAAAAAAAATAAA 8394416 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 2343 AAATTTTCATCGAttttttttttttt 2368 ||||||||||||| ||||||||||| Sbjct 27941382 AAATTTTCATCGAGGTTTTTTTTTTT 27941407 Score = 39.2 bits (42), Expect = 2.4 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 2564 CGTAATTAATCATGTTTATAT 2584 ||||||||||||||||||||| Sbjct 31025358 CGTAATTAATCATGTTTATAT 31025378 Score = 39.2 bits (42), Expect = 2.4 Identities = 32/38 (84%), Gaps = 2/38 (5%) Strand=Plus/Plus Query 1371 ATCATAATCTGAAAATTGTAAATTTCCTAATTAATTAA 1408 ||||| ||| ||||| || |||| ||||||||||||| Sbjct 33461691 ATCATTATC--AAAATCGTTAATTACCTAATTAATTAA 33461726 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/43 (79%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 2057 TATTTATATCTACGAGTCACATTTATAATTTTTATGAGttttt 2099 ||||||| ||| | ||||| ||||||||||| | | ||||| Sbjct 3040556 TATTTATTCTTACAATTCACACTTATAATTTTTTTTATTTTTT 3040514 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/42 (81%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 2616 TTAAACCTATGTGAAGAAATTAATGCAATTTGTATAATATTT 2657 |||||| ||||||||||| | ||| ||||||| || |||| Sbjct 10939237 TTAAAC--ATGTGAAGAAAATCATGGAATTTGTCAAAAATTT 10939276 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 12637688 AACAAAAATATATAAACCAAATAAA 12637712 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2079 TTATAATTTTTATGAGttttttt 2101 ||||||||||||||| ||||||| Sbjct 13534717 TTATAATTTTTATGACTTTTTTT 13534739 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 425 TTTCTAATTTTCTTGTTTTCATTTT 449 ||||||||||| || |||||||||| Sbjct 14644858 TTTCTAATTTTTTTTTTTTCATTTT 14644882 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 626 AAAAGGCATGAACAACAACATTTTC 650 ||||||||||| ||||||| ||||| Sbjct 18302587 AAAAGGCATGACCAACAACCTTTTC 18302611 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 2084 ATTTTTATGAGtttttttCCAATGGTTTTA 2113 ||||||||||| ||||||| ||||| ||| Sbjct 19501703 ATTTTTATGAGCTTTTTTCTGATGGTGTTA 19501674 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATAT--AAACAAAATAAATGC 104 ||| ||||||||||||| ||| |||||||| || Sbjct 20148676 AATAAAGAAAAATATATAGAAATAAAATAAAAGC 20148643 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAA 100 ||||| |||||||||||||||||| || Sbjct 21380049 ATTAA-AAAAATATATAAACAAAAGAA 21380074 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 2474 ATTTCATTTAACATTAATATCTCAAATTAATG 2505 ||| |||||||||||||||| | | ||||||| Sbjct 21447880 ATTCCATTTAACATTAATAT-TAACATTAATG 21447850 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1028 CTCAACTTCTCAAGACCCaaaaa 1050 ||||||||||| ||||||||||| Sbjct 21919358 CTCAACTTCTCCAGACCCAAAAA 21919336 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 75 TTAAGAAAAATATATAAACAAAATA 99 |||| ||||||||||||| |||||| Sbjct 23123778 TTAAAAAAAATATATAAAAAAAATA 23123754 Score = 37.4 bits (40), Expect = 8.5 Identities = 51/67 (76%), Gaps = 7/67 (10%) Strand=Plus/Minus Query 2162 AATTCAATGACACTAATG----CACC-ACCATCGATTA-ATTAATGCTATATATAGTTTA 2215 || ||||||||||||||| |||| || || | | | | || |||||| | || |||| Sbjct 23771420 AAGTCAATGACACTAATGACCTCACCTACAATAGTTAAGAATACTGCTAT-TGTAATTTA 23771362 Query 2216 ATTAGAA 2222 ||||||| Sbjct 23771361 ATTAGAA 23771355 Score = 37.4 bits (40), Expect = 8.5 Identities = 37/48 (77%), Gaps = 4/48 (8%) Strand=Plus/Plus Query 2602 TTTAGTGTCAAATATTAAACCTAT----GTGAAGAAATTAATGCAATT 2645 |||| | |||||| ||| | || | ||||| |||||||||||||| Sbjct 24860631 TTTAATATCAAATCTTACAGCTTTTAGAGTGAAAAAATTAATGCAATT 24860678 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 814 TCCAACAACCTTCTCCTTTTTCT 836 ||| ||||||||||||||||||| Sbjct 26913243 TCCCACAACCTTCTCCTTTTTCT 26913265 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 80 AAAAATATATAAACAAAATAAAT 102 ||||||||||||| ||||||||| Sbjct 27385266 AAAAATATATAAAAAAAATAAAT 27385288 Score = 37.4 bits (40), Expect = 8.5 Identities = 36/46 (78%), Gaps = 4/46 (9%) Strand=Plus/Plus Query 2330 GTTTTTATTGTTCAAATTTTCATCGAtttttttt----tttttGGG 2371 |||||| ||||||||||||||| | | |||| | |||||||| Sbjct 28526100 GTTTTTTTTGTTCAAATTTTCACAGTTCTTTTCTACAGTTTTTGGG 28526145 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1221 ACACAAGCAAAACCTGAGATCAT 1243 |||||| |||||||||||||||| Sbjct 31351327 ACACAAACAAAACCTGAGATCAT 31351305 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 2332 TTTTATTGTTCAAATTTTCATCGAttttttttttt 2366 ||| ||| ||||||||||| | ||||| ||| ||| Sbjct 31442512 TTTAATTTTTCAAATTTTCTTTGATTTATTTATTT 31442478 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 2057 TATTTATATCTACGAGTCACATTTATAATTTTT 2089 ||||||| | ||| ||||||||||||||||| Sbjct 31541157 TATTTATTTTTACATTTCACATTTATAATTTTT 31541125 Score = 37.4 bits (40), Expect = 8.5 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 18 ATCACATTTTC-ACaaaaaacaaaa 41 ||||||||||| ||||||||||||| Sbjct 34215526 ATCACATTTTCAACAAAAAACAAAA 34215502 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 35482525 AATAAAAATATATAAACCAAATAAA 35482501 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 42.8 bits (46), Expect = 0.20 Identities = 28/31 (90%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATAAATGCT 105 |||| |||||||| |||| |||||||||||| Sbjct 4371170 TTAATAAAAATATTTAAAAAAAATAAATGCT 4371200 Score = 41.0 bits (44), Expect = 0.70 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 2534 AATCCATCTTATGtttttttttCTTAACATCGTAATT 2570 |||||||||||| || |||| ||||| ||| ||||| Sbjct 765503 AATCCATCTTATTTTATTTTATCTTATTATCATAATT 765539 Score = 41.0 bits (44), Expect = 0.70 Identities = 42/51 (82%), Gaps = 3/51 (6%) Strand=Plus/Plus Query 1347 TTCAACTTCTATGAA-tttttttATATCA-TAATCTG-AAAATTGTAAATT 1394 ||| ||||||||||| ||||||| |||| | || || |||||||||| || Sbjct 4409384 TTCTACTTCTATGAATTTTTTTTGGATCATTCATTTGTAAAATTGTAATTT 4409434 Score = 41.0 bits (44), Expect = 0.70 Identities = 28/31 (90%), Gaps = 2/31 (6%) Strand=Plus/Minus Query 73 AATTAAG--AAAAATATATAAACAAAATAAA 101 ||||||| ||||||||||||| |||||||| Sbjct 10723952 AATTAAGTAAAAAATATATAAATAAAATAAA 10723922 Score = 41.0 bits (44), Expect = 0.70 Identities = 28/31 (90%), Gaps = 2/31 (6%) Strand=Plus/Plus Query 73 AATTAAG--AAAAATATATAAACAAAATAAA 101 ||||||| ||||||||||||| |||||||| Sbjct 10734479 AATTAAGTAAAAAATATATAAATAAAATAAA 10734509 Score = 41.0 bits (44), Expect = 0.70 Identities = 28/31 (90%), Gaps = 2/31 (6%) Strand=Plus/Plus Query 73 AATTAAG--AAAAATATATAAACAAAATAAA 101 ||||||| ||||||||||||| |||||||| Sbjct 10736181 AATTAAGTAAAAAATATATAAATAAAATAAA 10736211 Score = 39.2 bits (42), Expect = 2.4 Identities = 32/38 (84%), Gaps = 2/38 (5%) Strand=Plus/Minus Query 67 GCTAGGAAT--TAAGAAAAATATATAAACAAAATAAAT 102 ||||||||| ||||||||||| ||||| | || |||| Sbjct 7803699 GCTAGGAATGATAAGAAAAATAAATAAAAATAAAAAAT 7803662 Score = 39.2 bits (42), Expect = 2.4 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 2333 TTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||| |||||||||||| | || |||| |||||||| Sbjct 11822478 TTTTTTGTTCAAATTTCTAACGTTTTTCTTTTTTTT 11822513 Score = 39.2 bits (42), Expect = 2.4 Identities = 46/60 (77%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 2605 AGTGTCAAATATTAAACCTATGTGAAGAAATTA-ATGCAATTTGTATAATATTTTGTTTT 2663 ||||| ||||||||||||||| | || ||| | || || ||||| | | |||| |||| Sbjct 13444396 AGTGTAAAATATTAAACCTATTTTAATTAATAAGGTGGAAATTGTA-ATTTTTTTCTTTT 13444454 Score = 39.2 bits (42), Expect = 2.4 Identities = 32/38 (84%), Gaps = 1/38 (3%) Strand=Plus/Minus Query 2630 AGAAATTAATGCAATTTGTATAATATTT-TGTTTTCAT 2666 || |||||||||||| ||| || ||||| | ||||||| Sbjct 14522928 AGGAATTAATGCAATATGTGTAGTATTTATCTTTTCAT 14522891 Score = 39.2 bits (42), Expect = 2.4 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAA-ACAAAATAAAT 102 |||||||||||||| |||| ||||| ||||| Sbjct 17160636 AATTAAGAAAAATAAATAACACAAAGTAAAT 17160666 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 368 TATTACTGCTCtttttttttCTT 390 |||||||||||||| |||||||| Sbjct 487903 TATTACTGCTCTTTGTTTTTCTT 487925 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 295 TCTCTCTCTACACATTTAGACACACACATAGAT 327 |||||||||||||| | ||||||||||| || Sbjct 1213388 TCTCTCTCTACACACACACACACACACATATAT 1213420 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1694 GAGAGAGCGAAAGCTAGAGAAAGAG 1718 ||||||| |||||||||||| |||| Sbjct 1497976 GAGAGAGAGAAAGCTAGAGAGAGAG 1497952 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 942 CTTCACTTTCCCTTGAACAACACCA 966 ||||||||||||||||||| | ||| Sbjct 3139890 CTTCACTTTCCCTTGAACATCTCCA 3139914 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||| ||||||||| Sbjct 5855038 AACAAAAATATATAAGCAAAATAAA 5855014 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 6975721 AATAAAAATATATAAACCAAATAAA 6975697 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAATAA 100 |||||| |||| ||||||||||||||| Sbjct 8174362 AATTAATGAAAAGATATAAACAAAATAA 8174389 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/42 (81%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 2474 ATTTCATTTAACATTAATATCTCAAATTAATGATATATAGTT 2515 || ||||||||||| ||||||| |||| | | |||||||| Sbjct 10885348 ATATCATTTAACATAAATATCTTCAATT--TAAAATATAGTT 10885387 Score = 37.4 bits (40), Expect = 8.5 Identities = 36/45 (80%), Gaps = 1/45 (2%) Strand=Plus/Plus Query 80 AAAAATATATAAAC-AAAATAAATGCTTTTTCAAAGGCTTATATG 123 |||| ||| ||| |||||||||||||| | ||| |||| |||| Sbjct 15102919 AAAAGTATGAAAATGAAAATAAATGCTTTATGAAATGCTTTTATG 15102963 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1694 GAGAGAGCGAAAGCTAGAGAAAGAG 1718 ||||||| |||||||||||| |||| Sbjct 17143542 GAGAGAGAGAAAGCTAGAGAGAGAG 17143566 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Plus Query 70 AGGAATTAAGAAAAATATATA--AACAAAATAAA 101 || ||| |||||||||||||| || |||||||| Sbjct 18654174 AGAAATAAAGAAAAATATATAGGAATAAAATAAA 18654207 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATAAA 101 |||| ||||||||||||| |||||||| Sbjct 23740065 TTAA-AAAAATATATAAATAAAATAAA 23740090 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 398 CAGGCTAAGGaaaaaaaGAAATCTCTCTTT 427 ||||| || ||||||| |||||||||||| Sbjct 24361126 CAGGCAAAAGAAAAAAGAAAATCTCTCTTT 24361155 Score = 37.4 bits (40), Expect = 8.5 Identities = 39/49 (80%), Gaps = 3/49 (6%) Strand=Plus/Plus Query 412 aaaGAAATCTC-TCTTTCTAATTTTCTTGTTTTCATTTTGGTTGAGACT 459 ||||||| ||| ||||| | |||| || |||| ||||||||||| || Sbjct 25470177 AAAGAAAGCTCCTCTTTTTTTTTTTTTTTTTTT--TTTTGGTTGAGGCT 25470223 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAA 101 |||| |||||||||||||| ||| |||| Sbjct 26524237 ATTATGAAAAATATATAAATAAATTAAA 26524264 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAA 97 |||| |||||||||||||||||| Sbjct 26738496 TTAAAAAAAATATATAAACAAAA 26738518 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAA 101 |||| |||||||||||||| ||| |||| Sbjct 26789111 ATTATGAAAAATATATAAATAAATTAAA 26789138 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAA 101 |||| |||||||||||||| ||| |||| Sbjct 26815551 ATTATGAAAAATATATAAATAAATTAAA 26815578 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 26851887 AACAAAAATATATAAACCAAATAAA 26851911 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 42.8 bits (46), Expect = 0.20 Identities = 34/42 (81%), Gaps = 7/42 (17%) Strand=Plus/Plus Query 2330 GTTTTTATTGTTCAAATTTTCATCGAtttttttttttttGGG 2371 |||||||||||| |||||| |||||||||||||||| Sbjct 22586454 GTTTTTATTGTTGAAATTT-------TTTTTTTTTTTTTGGG 22586488 Score = 41.0 bits (44), Expect = 0.70 Identities = 38/46 (83%), Gaps = 3/46 (7%) Strand=Plus/Minus Query 2317 TTATACTATTATGGTT--TTTATTGTTCAAATTTTCA-TCGAtttt 2359 ||| ||| |||||||| ||| ||||||||||||| | | |||||| Sbjct 28820741 TTAAACTTTTATGGTTCATTTTTTGTTCAAATTTTTATTAGATTTT 28820696 Score = 39.2 bits (42), Expect = 2.4 Identities = 32/38 (84%), Gaps = 1/38 (3%) Strand=Plus/Minus Query 1107 AAAGGGACACGAGATCGTAGGATGAGACTCTC-GCTAG 1143 ||||| ||||||||||| || ||||||| || ||||| Sbjct 5174871 AAAGGTACACGAGATCGACGGCTGAGACTGTCTGCTAG 5174834 Score = 39.2 bits (42), Expect = 2.4 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1171 AAGACATGCTTGGATTTGACAAAG 1194 |||||||||||||| ||||||||| Sbjct 17743223 AAGACATGCTTGGAATTGACAAAG 17743200 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1735 GGAGAAAATGATGATGAAGATGAAAG 1760 |||||||||||||||| ||| ||||| Sbjct 22782177 GGAGAAAATGATGATGGAGAGGAAAG 22782152 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 78 AGAAAAATATATAAACAAAATAAAT 102 ||||||||||||||| |||||||| Sbjct 1145654 AGAAAAATATATAAAATAAATAAAT 1145630 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATAAA 92 |||||||||||||||||||| Sbjct 1325378 AATTAAGAAAAATATATAAA 1325359 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2583 ATGAAGGCTTTTTCGTCATTTTA 2605 |||||||| |||||||||||||| Sbjct 2566851 ATGAAGGCATTTTCGTCATTTTA 2566829 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1737 AGAAAATGATGATGAAGATGAAAGG 1761 |||| | |||||||||||||||||| Sbjct 2989071 AGAAGAAGATGATGAAGATGAAAGG 2989047 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1797 CTCATGATCATGGTGAGATAATAAAGAATA 1826 |||||||||||||||||| || ||| |||| Sbjct 3506689 CTCATGATCATGGTGAGA-AAAAAAAAATA 3506717 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 408 aaaaaaaGAAATCTCTCTTTCTA 430 ||||||| ||||||||||||||| Sbjct 7844688 AAAAAAAAAAATCTCTCTTTCTA 7844666 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 2331 TTTTTATTGTTCAAATTTTCATCGAtttttttttt 2365 |||| ||| || ||||||||||| | || |||||| Sbjct 8416496 TTTTAATTTTTAAAATTTTCATCTAATTATTTTTT 8416462 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 11856611 AACAAAAATATATAAACCAAATAAA 11856587 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 45 AATATATTTTTATCATG-CCGAAGCTAGGA 73 || |||||||||||||| || ||||||||| Sbjct 13692978 AAAATATTTTTATCATGACCCAAGCTAGGA 13693007 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 2467 GAAACTGATTTCATTTAACATTA 2489 ||||||||||||||| ||||||| Sbjct 14026541 GAAACTGATTTCATTAAACATTA 14026519 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1385 ATTGTAAATTTCCTAATTAATTAAGGACCG 1414 ||| |||| ||||||||||||||||||| Sbjct 29199033 ATTTTAAAGAACCTAATTAATTAAGGACCG 29199062 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 2633 AATTAATGCA-ATTTGTATAATATTTT 2658 |||||||||| | |||||||||||||| Sbjct 30182066 AATTAATGCAGAGTTGTATAATATTTT 30182092 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 42.8 bits (46), Expect = 0.20 Identities = 25/26 (96%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAAT 98 ||||||||||||| |||||||||||| Sbjct 1947765 AATTAAGAAAAATTTATAAACAAAAT 1947790 Score = 42.8 bits (46), Expect = 0.20 Identities = 44/55 (80%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 1689 AGGAGGAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTAGAAC-AATGGAGAAAA 1742 || |||||| || ||| |||||||||||| | || | ||| | ||||||||||| Sbjct 13277289 AGAAGGAGAAGGCAAAACCTAGAGAAAGAG-AGAGAGAAGACCAAATGGAGAAAA 13277342 Score = 42.8 bits (46), Expect = 0.20 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 2460 ATGTATTGAAACTGATTTCATTTAACATTAATATCTCA 2497 |||| || | | || ||||||||||||| ||||||||| Sbjct 22187856 ATGTTTTAATATTGTTTTCATTTAACATGAATATCTCA 22187893 Score = 41.0 bits (44), Expect = 0.70 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 634 TGAACAACAACATTTTCAGTACTACTACCA 663 ||||| |||||||||||| ||| ||||||| Sbjct 19438834 TGAACTACAACATTTTCAATACAACTACCA 19438805 Score = 41.0 bits (44), Expect = 0.70 Identities = 33/39 (85%), Gaps = 1/39 (3%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAATGCTTTTTCAA 112 ||||| ||||||||||||| |||| ||| |||||| || Sbjct 20172826 ATTAA-AAAAATATATAAAAAAAAAAAAAACTTTTTAAA 20172863 Score = 39.2 bits (42), Expect = 2.4 Identities = 27/31 (87%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAATAAATG 103 || ||| ||||||||||||| |||||| ||| Sbjct 3234253 AAATAAAAAAAATATATAAAAAAAATATATG 3234283 Score = 39.2 bits (42), Expect = 2.4 Identities = 30/36 (83%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 2057 TATTTATATCTACGAGTCACATTTATAATTTTTATG 2092 ||||||| ||||| ||||| ||||||||||| || Sbjct 17919486 TATTTATTTCTACATCTCACACTTATAATTTTTTTG 17919521 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 418 ATCTCTCTTTCTAATTTTCTTGTTTT 443 |||||||| ||| ||||||||||||| Sbjct 20278045 ATCTCTCTCTCTTATTTTCTTGTTTT 20278020 Score = 39.2 bits (42), Expect = 2.4 Identities = 38/48 (79%), Gaps = 2/48 (4%) Strand=Plus/Minus Query 2699 TTTAAACGTTGTTTGTTAATATTATCTCTGTGTTGTTAAGTTTGTCTA 2746 ||| || || |||||||||||||| | ||| ||| |||||||| || Sbjct 24436552 TTTGAATGTAATTTGTTAATATTATTTTTGTATTG--AAGTTTGTATA 24436507 Score = 39.2 bits (42), Expect = 2.4 Identities = 38/47 (81%), Gaps = 3/47 (6%) Strand=Plus/Plus Query 2321 ACTATTATGGTTTTTATTGTTCAAATTTTCATCGAtttttttttttt 2367 || ||||| | ||||| || ||||||||||| |||||||| |||| Sbjct 26360535 ACAATTAT--TATTTATCGTATAAATTTTCATC-ATTTTTTTATTTT 26360578 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 80 AAAAATATATAAACAAAATAAAT 102 |||||| |||||||||||||||| Sbjct 457964 AAAAATTTATAAACAAAATAAAT 457942 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 2215 AATTAGAAGTTAGTTTTTGTGTTTTGT 2241 |||||||| ||| |||||||||||||| Sbjct 1066398 AATTAGAA-TTATTTTTTGTGTTTTGT 1066373 Score = 37.4 bits (40), Expect = 8.5 Identities = 34/41 (83%), Gaps = 3/41 (7%) Strand=Plus/Minus Query 2474 ATTTCATTTAACATT--AATATCTCAAATTAATGATATATA 2512 ||||||||||||||| ||||| ||||| ||| |||||| Sbjct 10136812 ATTTCATTTAACATTAGAATAT-TCAAAGAAATATTATATA 10136773 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATAAA 101 |||| ||||||||||||| |||||||| Sbjct 21193272 TTAA-AAAAATATATAAAAAAAATAAA 21193297 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 97 ATAAATGCTTTTTCAAAGGCTTATATGTTG 126 || ||||||||||||||||||| | || || Sbjct 25638889 ATCAATGCTTTTTCAAAGGCTTGTTTGGTG 25638918 Score = 37.4 bits (40), Expect = 8.5 Identities = 50/65 (77%), Gaps = 5/65 (8%) Strand=Plus/Minus Query 2080 TATAATTTTTATGAGtttttttCCAATGGTTTTATCTAAAGCTATACACAGTTAATTCAA 2139 |||||||||||| | ||||||| ||| |||||| |||| |||| | | ||||| || Sbjct 28098490 TATAATTTTTAT-AATTTTTTTAAAAT--TTTTATATAAA-ATATA-ATAAATAATTTAA 28098436 Query 2140 GTTTT 2144 |||| Sbjct 28098435 TTTTT 28098431 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 42.8 bits (46), Expect = 0.20 Identities = 31/35 (89%), Gaps = 1/35 (3%) Strand=Plus/Minus Query 1624 GAGATCGATGA-GAGGGAAGAGAAAGAGGCCAGAA 1657 ||||| ||||| |||||||||||||||| | |||| Sbjct 1064342 GAGATAGATGACGAGGGAAGAGAAAGAGCCGAGAA 1064308 Score = 42.8 bits (46), Expect = 0.20 Identities = 28/31 (90%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATAAACAAAATAAATG 103 |||||| ||||||||||||| |||||| ||| Sbjct 39633168 AATTAAAAAAAATATATAAAAAAAATACATG 39633138 Score = 41.0 bits (44), Expect = 0.70 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 1741 AATGATGATGAAGATGAAAGGA 1762 |||||||||||||||||||||| Sbjct 14173884 AATGATGATGAAGATGAAAGGA 14173863 Score = 41.0 bits (44), Expect = 0.70 Identities = 27/29 (93%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATAAACAAAATAAA 101 |||||| ||||||||||||| |||||||| Sbjct 17396857 AATTAA-AAAAATATATAAAAAAAATAAA 17396830 Score = 41.0 bits (44), Expect = 0.70 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 432 TTTTCTTGTTTTCATTTTGGTTGAGACTTGAGATCAA 468 |||| ||||| | |||||||||||| |||| ||||| Sbjct 36754737 TTTTATTGTTGTTATTTTGGTTGAGTTTTGACATCAA 36754773 Score = 41.0 bits (44), Expect = 0.70 Identities = 30/35 (86%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 2646 TGTATAATATTTTGTTTTCATAGTTCGAGTGGATT 2680 || ||||||| || ||||||||||| |||| |||| Sbjct 43379307 TGCATAATATATTTTTTTCATAGTTTGAGTTGATT 43379273 Score = 41.0 bits (44), Expect = 0.70 Identities = 35/43 (81%), Gaps = 3/43 (7%) Strand=Plus/Plus Query 1679 AAGTTGTCCAAGGAG---GAGAGAGCGAAAGCTAGAGAAAGAG 1718 ||||||||||||||| ||||||| || || ||||| |||| Sbjct 45220875 AAGTTGTCCAAGGAGAGAGAGAGAGTGAGAGAGAGAGAGAGAG 45220917 Score = 39.2 bits (42), Expect = 2.4 Identities = 32/39 (82%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 75 TTAAGAAAAATATATAAACAAAATAAATGCTTTTTCAAA 113 ||||| |||| ||| ||| |||| || ||||||||||| Sbjct 631318 TTAAGCAAAACATAAAAAAAAAAAAACAGCTTTTTCAAA 631280 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 74 ATTAAGAAAAATATATAAACAAAATAAA 101 ||||| ||||||||||||| |||||||| Sbjct 2025883 ATTAA-AAAAATATATAAAAAAAATAAA 2025857 Score = 39.2 bits (42), Expect = 2.4 Identities = 32/38 (84%), Gaps = 1/38 (3%) Strand=Plus/Plus Query 77 AAGAAAAATATATAA-ACAAAATAAATGCTTTTTCAAA 113 ||||||||||||||| | |||||| || ||||| ||| Sbjct 8953072 AAGAAAAATATATAATAAAAAATATATTTTTTTTTAAA 8953109 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 88 ATAAACAAAATAAATGCTTTTTCAAA 113 ||||| ||||||||||||||||| || Sbjct 13683692 ATAAATAAAATAAATGCTTTTTCCAA 13683717 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 72 GAATTAAGAAAAATATATAAACAAAATAA 100 || |||||||||||| |||||||||| || Sbjct 33035772 GATTTAAGAAAAATAAATAAACAAAACAA 33035744 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 75 TTAAGAAAAATATATAAACAAAATAAA 101 |||| ||||||||||||| |||||||| Sbjct 837861 TTAA-AAAAATATATAAAAAAAATAAA 837836 Score = 37.4 bits (40), Expect = 8.5 Identities = 39/49 (80%), Gaps = 2/49 (4%) Strand=Plus/Plus Query 1604 AGAGGAAACAAGG-TCGATGGGAGATCGATGAGAGGGA-AGAGAAAGAG 1650 ||||| | |||| || | | |||||||||||||| || ||||| |||| Sbjct 5019471 AGAGGGAGCAAGAATCAAAGAGAGATCGATGAGAGAGAGAGAGAGAGAG 5019519 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 418 ATCTCTCTTTCTAATTTTCTTGTTTTCATTTT 449 |||||||||||||| ||| || |||| ||||| Sbjct 5281353 ATCTCTCTTTCTAA-TTTATTCTTTTTATTTT 5281323 Score = 37.4 bits (40), Expect = 8.5 Identities = 37/46 (80%), Gaps = 3/46 (7%) Strand=Plus/Plus Query 1709 AGAGAAAGAGCAA--AGGGTAGAACAATGGAGAAAATGATGATGAA 1752 ||| ||||||||| | | ||||| ||| || ||||||||||||| Sbjct 9295357 AGACAAAGAGCAACTAAAG-AGAACCATGAAGCAAATGATGATGAA 9295401 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/34 (85%), Gaps = 3/34 (9%) Strand=Plus/Minus Query 583 TTTGTCTTAGGGTTTTTTAATT---TTGTTACTT 613 ||| ||||| |||||||||||| ||||||||| Sbjct 9411452 TTTATCTTATGGTTTTTTAATTTCATTGTTACTT 9411419 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Plus Query 105 TTTTTCAAAGGCTTATATGTTGTTCCTTC 133 ||||||| ||||||| |||||||||||| Sbjct 13496217 TTTTTCA--GGCTTATTTGTTGTTCCTTC 13496243 Score = 37.4 bits (40), Expect = 8.5 Identities = 32/38 (84%), Gaps = 4/38 (11%) Strand=Plus/Minus Query 75 TTAAGAAAAATATATAAACAAAATAAATGCTTTTTCAA 112 |||| ||||||||||||| ||||| |||||| |||| Sbjct 14439871 TTAA-AAAAATATATAAAAAAAAT---TGCTTTGTCAA 14439838 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 73 AATTAAGAAAAATATATAAACAAAATAAAT 102 || ||| ||||||||||||| |||||| || Sbjct 16514656 AACTAAAAAAAATATATAAAAAAAATATAT 16514685 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 80 AAAAATATATAAACAAAATA 99 |||||||||||||||||||| Sbjct 16624384 AAAAATATATAAACAAAATA 16624365 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 74 ATTAAGAAAAATATATA-AACAAAATAAATGC 104 || |||||||||||||| | ||||||||||| Sbjct 17491964 ATGAAGAAAAATATATATAGGAAAATAAATGC 17491933 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2065 TCTACGAGTCACATTTATAATTTTT 2089 ||||||||| ||||||||||| ||| Sbjct 19886232 TCTACGAGTTACATTTATAATATTT 19886208 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 614 CAAAAACCCCTAAAAAGGCATGAACAACAA 643 ||||||| ||||||||||| |||||||| Sbjct 19989209 CAAAAACACCTAAAAAGGCTATAACAACAA 19989180 Score = 37.4 bits (40), Expect = 8.5 Identities = 35/45 (78%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1367 ttATATCATAATCTGAAAATTGTAAATTTCCTAATTAATTAAGGA 1411 || || |||||| | || || ||| ||| |||||||||||||| Sbjct 20518534 TTTTAACATAATTTAAATATGATAATATTCTTAATTAATTAAGGA 20518578 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 94 AAAATAAATGCTTTTTCAAAGGCTTATATG 123 |||||||||||||| | ||| |||| |||| Sbjct 21295222 AAAATAAATGCTTTATGAAATGCTTTTATG 21295193 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 378 CtttttttttCTTGATTTTGCAG 400 |||| |||||||||||||||||| Sbjct 22360314 CTTTGTTTTTCTTGATTTTGCAG 22360336 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 2209 TAGTTTAATTAGAAGTTAGTTTTTGTGTTTTGT 2241 ||||||| | ||| |||| ||||||||||||| Sbjct 23021659 TAGTTTATTGAGAGATTAGGTTTTGTGTTTTGT 23021627 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 75 TTAAGAAAAATATATAAACAAAATAAA 101 |||||||||||| ||||| |||||||| Sbjct 26954994 TTAAGAAAAATAAATAAA-AAAATAAA 26954969 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 2197 TAATGCTATATATAGTTTAA 2216 |||||||||||||||||||| Sbjct 27675958 TAATGCTATATATAGTTTAA 27675977 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATAAACAAAATA 99 |||||| ||||||||||||| |||||| Sbjct 29756638 AATTAA-AAAAATATATAAAAAAAATA 29756613 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2534 AATCCATCTTATGtttttttttCTT 2558 ||||||||||||| |||||||| || Sbjct 30673121 AATCCATCTTATGGTTTTTTTTTTT 30673097 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Minus Query 418 ATCTCTCTTTCTAATTTTCTTGTTTTCATTTT 449 |||||||||||| ||||||| ||||| |||| Sbjct 33270386 ATCTCTCTTTCTTTTTTTCTT-TTTTCTTTTT 33270356 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 2057 TATTTATATCTACGAGTCACATTTATAATTTTT 2089 || |||| ||||||| ||||||||||||||| Sbjct 33679187 TACTTATGTCTACGAAAAACATTTATAATTTTT 33679155 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 82 AAATATATAAACAAAATAAATGC 104 ||||||| ||||||||||||||| Sbjct 34913952 AAATATAAAAACAAAATAAATGC 34913974 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 2331 TTTTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 ||||| || ||||||||||| | ||||||| ||||| Sbjct 35021404 TTTTTTTTTTTCAAATTTTCTTTTTTTTTTTTCTTTTT 35021367 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 2330 GTTTTTATTGTTCAAATTTTCATCGAttttttttt 2364 |||||| || ||||||||||| | ||||||||| Sbjct 36108107 GTTTTTTTTTTTCAAATTTTCTTTTCTTTTTTTTT 36108073 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATAAACAAAA 97 |||||||||||||| | |||||||| Sbjct 36123031 AATTAAGAAAAATAAACAAACAAAA 36123007 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 36925841 AACAAAAATATATAAACCAAATAAA 36925817 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 403 TAAGGaaaaaaaGAAATCTCTCTTT 427 ||||||||| || |||||||||||| Sbjct 37027320 TAAGGAAAATAAAAAATCTCTCTTT 37027296 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2504 TGATATATAGTTTGGTGAGAGAGATATGTT 2533 |||||||||||||| | || ||||| |||| Sbjct 38666845 TGATATATAGTTTGCTAAGTGAGATGTGTT 38666874 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 2331 TTTTTATTGTTCAAATTTTCATC 2353 |||||||| |||||||||||||| Sbjct 42453583 TTTTTATTCTTCAAATTTTCATC 42453605 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 2331 TTTTTATTGTTCAAATTTTCATCGAtttttttttt 2365 ||||||||||||| || || || |||| |||||| Sbjct 46271340 TTTTTATTGTTCATATATTTATTTATTTATTTTTT 46271374 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||| ||||||||| Sbjct 48154065 AATAAAAATATATAAGCAAAATAAA 48154041 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 41.0 bits (44), Expect = 0.70 Identities = 34/42 (81%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 2327 ATGGTTTTTATTGTTCAAATTTTCATCGAttttttttttttt 2368 |||||||||||| ||| | | ||| | | |||||||||| || Sbjct 1389938 ATGGTTTTTATTATTCTACTCTTCTTTGTTTTTTTTTTTGTT 1389897 Score = 41.0 bits (44), Expect = 0.70 Identities = 31/36 (86%), Gaps = 2/36 (6%) Strand=Plus/Minus Query 790 ATCATCTTGACCATCATCATCA--ATTCCAACAACC 823 |||||| |||||||||||| || || ||||||||| Sbjct 3149593 ATCATCATGACCATCATCAACAAGATACCAACAACC 3149558 Score = 41.0 bits (44), Expect = 0.70 Identities = 25/27 (93%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 2341 TCAAATTTTCATCGAtttttttttttt 2367 ||||||||||||| |||||||||||| Sbjct 9365938 TCAAATTTTCATCCTTTTTTTTTTTTT 9365912 Score = 39.2 bits (42), Expect = 2.4 Identities = 28/31 (90%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 73 AATTA-AGAAAAATATATAAACAAAATAAAT 102 ||||| | ||||||| ||||||||||||||| Sbjct 1032013 AATTATATAAAAATAAATAAACAAAATAAAT 1031983 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 74 ATTAAGAAAAATATATAAACAAAATAAAT 102 ||||||||||||||||||| ||| | ||| Sbjct 1827820 ATTAAGAAAAATATATAAATAAACTGAAT 1827848 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/28 (93%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 69 TAGG-AATTAAGAAAAATATATAAACAA 95 |||| |||||| |||||||||||||||| Sbjct 6399061 TAGGCAATTAAAAAAAATATATAAACAA 6399034 Score = 39.2 bits (42), Expect = 2.4 Identities = 40/49 (82%), Gaps = 5/49 (10%) Strand=Plus/Minus Query 1712 GAAAGAGCAAAGGGTAGAACAATGGAGAAAATGATGATGAAGATGAAAG 1760 |||||||||||||| ||| | || || || ||||| ||||||||||| Sbjct 13030940 GAAAGAGCAAAGGG--GAATA-TGAAGGAA--GATGAGGAAGATGAAAG 13030897 Score = 39.2 bits (42), Expect = 2.4 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 1567 TGTTACAAAAGATAAATTATCTTATA 1592 |||||||||||||||||||| || || Sbjct 13432506 TGTTACAAAAGATAAATTATGTTGTA 13432481 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 414 AGAAATCTCTCTTTCTAATTTTCTT 438 |||||| ||||| |||||||||||| Sbjct 854796 AGAAATGTCTCTCTCTAATTTTCTT 854772 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 31 aaaaaacaaaaaCGAATATATTTTTATCAT 60 |||||| |||||| | ||||||||||| || Sbjct 2050215 AAAAAAAAAAAACTACTATATTTTTATTAT 2050244 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 2631 GAAATTAATGCAATTTGTATAATAT 2655 ||||||||||| |||| |||||||| Sbjct 4332237 GAAATTAATGCTATTTATATAATAT 4332261 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1584 TATCTTATACATTAGAAACAAGA 1606 |||||||||||||| |||||||| Sbjct 5196455 TATCTTATACATTATAAACAAGA 5196433 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1543 TATATAGAGTACTTTCTATCAAAAT 1567 || |||||||||||| ||||||||| Sbjct 5418999 TAGATAGAGTACTTTTTATCAAAAT 5418975 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 2464 ATTGAAACTGATTTCATTT-AACATTAATATC 2494 ||| ||||||||||||||| || |||||| || Sbjct 6085117 ATTCAAACTGATTTCATTTGAATATTAATTTC 6085148 Score = 37.4 bits (40), Expect = 8.5 Identities = 38/49 (78%), Gaps = 2/49 (4%) Strand=Plus/Minus Query 13 CTATTATCACATTTTCACaaaaaacaaa--aaCGAATATATTTTTATCA 59 || || ||||||||||||| |||| ||| || ||| |||||| ||| Sbjct 10058526 CTTTTTTCACATTTTCACATAAAATAAAATAAAAAATTCATTTTTTTCA 10058478 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 74 ATTAAGAAAAATATATAAACAAAATAAATG 103 || || ||||| |||||||||||||| ||| Sbjct 10140514 ATCAAAAAAAAAATATAAACAAAATACATG 10140485 Score = 37.4 bits (40), Expect = 8.5 Identities = 24/25 (96%), Gaps = 1/25 (4%) Strand=Plus/Plus Query 1743 TGATGATGAAGATGAAAG-GAAGAT 1766 |||||||||||||||||| |||||| Sbjct 15794838 TGATGATGAAGATGAAAGTGAAGAT 15794862 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 2190 GATTAATTAATGCTATATATAGTTTAATTA 2219 ||||||||||| | ||||||||||||||| Sbjct 20616450 GATTAATTAATTAT-TATATAGTTTAATTA 20616422 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1362 tttttttATATCATAATCTGAAAATTGTAAATT 1394 |||||| |||| |||||||||||||| |||| Sbjct 24028798 TTTTTTCATATATGAATCTGAAAATTGTGAATT 24028830 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 1552 TACTTTCTATCAA-AATGTTACAAAAGATA 1580 || |||| ||||| |||||||||||||||| Sbjct 24560437 TATTTTCGATCAAGAATGTTACAAAAGATA 24560466 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 || |||||||||||||| ||||||| Sbjct 26220348 AATAAAAATATATAAACCAAATAAA 26220324 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 80 AAAAATATATAAACAAAATAAATGCTTTTT 109 |||||||||||||| || |||||| | ||| Sbjct 26477650 AAAAATATATAAACTAATTAAATGGTATTT 26477621 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 41.0 bits (44), Expect = 0.70 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 |||||||||||||| |||||||||| Sbjct 15659697 AAGAAAAATATATATACAAAATAAA 15659673 Score = 41.0 bits (44), Expect = 0.70 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 |||||||||||||| |||||||||| Sbjct 15826392 AAGAAAAATATATATACAAAATAAA 15826368 Score = 41.0 bits (44), Expect = 0.70 Identities = 24/25 (96%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 |||||||||||||| |||||||||| Sbjct 16015557 AAGAAAAATATATATACAAAATAAA 16015533 Score = 41.0 bits (44), Expect = 0.70 Identities = 27/29 (93%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 74 ATTAAGAAAAATATATAAACAAAATAAAT 102 ||||| ||||||||||||| ||||||||| Sbjct 16772954 ATTAA-AAAAATATATAAAAAAAATAAAT 16772927 Score = 41.0 bits (44), Expect = 0.70 Identities = 31/37 (84%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1694 GAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTAGAA 1730 ||||||| || || ||||| |||||||||||| ||| Sbjct 22019810 GAGAGAGAGAGAGAGAGAGAGAGAGCAAAGGGTGGAA 22019846 Score = 39.2 bits (42), Expect = 2.4 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 2645 TTGTATAATATTTTGTTTTCA 2665 ||||||||||||||||||||| Sbjct 13757317 TTGTATAATATTTTGTTTTCA 13757337 Score = 39.2 bits (42), Expect = 2.4 Identities = 32/39 (82%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATAAATGCTTTTTCAAA 113 |||| |||||||||||| |||| ||| | |||||||| Sbjct 17586653 TTAAACAAAATATATAAAAAAAAAAAAATCATTTTCAAA 17586691 Score = 39.2 bits (42), Expect = 2.4 Identities = 30/33 (91%), Gaps = 2/33 (6%) Strand=Plus/Plus Query 2337 TTGTTCAAATT-TTCATCGAttttttttttttt 2368 ||||||||||| |||||| ||||||||||||| Sbjct 25278865 TTGTTCAAATTCTTCATCT-TTTTTTTTTTTTT 25278896 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 2533 TAATCCATCTTATGtttttt 2552 |||||||||||||||||||| Sbjct 774817 TAATCCATCTTATGTTTTTT 774836 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 2533 TAATCCATCTTATGtttttt 2552 |||||||||||||||||||| Sbjct 851122 TAATCCATCTTATGTTTTTT 851141 Score = 37.4 bits (40), Expect = 8.5 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 2534 AATCCATCTTATGttttttt 2553 |||||||||||||||||||| Sbjct 875223 AATCCATCTTATGTTTTTTT 875242 Score = 37.4 bits (40), Expect = 8.5 Identities = 35/44 (80%), Gaps = 2/44 (5%) Strand=Plus/Minus Query 2202 CTATATATAGTTTAATTAGAAGTTAGTTTTTGTGTTTTGTGGAT 2245 ||||||||| || ||| ||| | ||||| |||||||||||| Sbjct 3856634 CTATATATATCTTCATTTGAAAT--GTTTTCTTGTTTTGTGGAT 3856593 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/27 (93%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 380 ttttttttCTTG-ATTTTGCAGGCTAA 405 |||||||| ||| |||||||||||||| Sbjct 4056995 TTTTTTTTGTTGTATTTTGCAGGCTAA 4057021 Score = 37.4 bits (40), Expect = 8.5 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 1343 AGTTTTCAACTTCTATGAAtttt 1365 |||||||||||||||||| |||| Sbjct 6974275 AGTTTTCAACTTCTATGATTTTT 6974253 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 2321 ACTATTATGGTTTTTATTGTTCAAATTTTCATC 2353 |||||||| ||| || | |||||||||||||| Sbjct 9187615 ACTATTATTGTTCTTGATCTTCAAATTTTCATC 9187647 Score = 37.4 bits (40), Expect = 8.5 Identities = 27/30 (90%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 73 AATTAAGAAAAATA-TATAAACAAAATAAA 101 |||||||||||||| || ||| |||||||| Sbjct 9861244 AATTAAGAAAAATATTAAAAATAAAATAAA 9861215 Score = 37.4 bits (40), Expect = 8.5 Identities = 31/37 (84%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 2479 ATTTAACAT-TAATATCTCAAATTAATGATATATAGT 2514 ||||||||| |||||| | || ||||||||||||| Sbjct 13136058 ATTTAACATATAATATATATAAAAAATGATATATAGT 13136022 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 414 AGAAATCTCTCTTTCTAATTTT-CTTGTTTTC 444 ||||| |||||||||||||| ||||||||| Sbjct 16049251 AGAAACTGCTCTTTCTAATTTTGCTTGTTTTC 16049282 Score = 37.4 bits (40), Expect = 8.5 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 73 AATTAAGAAAAATATATAAACAAAATAAA 101 |||||| |||||||||||| |||||||| Sbjct 18111363 AATTAA--AAAATATATAAAAAAAATAAA 18111337 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 78 AGAAAAATATATAAACAAAATAAAT 102 ||||||||| | ||||||||||||| Sbjct 25415200 AGAAAAATAGACAAACAAAATAAAT 25415224 Score = 37.4 bits (40), Expect = 8.5 Identities = 36/46 (78%), Gaps = 3/46 (7%) Strand=Plus/Plus Query 303 TACACATTTAGACACACACATAGATTCTCTAGAACAAAGACATATT 348 |||||||||| | |||||||||| || ||||||||||| || Sbjct 28115918 TACACATTTATA---ACACATAGATCAGATATAACAAAGACATTTT 28115960 >Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 Length=1158772 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 2339 GTTCAAATTTTCATCGAtttttttttttt 2367 ||||||||||| |||| ||||||||||| Sbjct 664909 GTTCAAATTTTATTCGAATTTTTTTTTTT 664937 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 39.2 bits (42), Expect = 2.4 Identities = 31/35 (89%), Gaps = 3/35 (9%) Strand=Plus/Minus Query 431 ATTTTCTTGTT--TTCATTTTGGTTGAGAC-TTGA 462 ||||||||||| || |||||||||||||| |||| Sbjct 3367901 ATTTTCTTGTTCTTTAATTTTGGTTGAGACATTGA 3367867 Score = 39.2 bits (42), Expect = 2.4 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 433 TTTCTTGTTTTCATTTTGGTTGAGACTTG 461 ||| ||||||| ||||| ||||||||||| Sbjct 14958703 TTTGTTGTTTTGATTTTTGTTGAGACTTG 14958731 Score = 39.2 bits (42), Expect = 2.4 Identities = 29/33 (88%), Gaps = 1/33 (3%) Strand=Plus/Minus Query 2527 ATATGTTAATCCATCTTATGtttttttttCTTA 2559 ||||| |||||||||||| |||||||||||| Sbjct 19592162 ATATGCTAATCCATCTTA-CATTTTTTTTCTTA 19592131 Score = 39.2 bits (42), Expect = 2.4 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1031 AACTTCTCAAGACCCaaaaat 1051 ||||||||||||||||||||| Sbjct 22170107 AACTTCTCAAGACCCAAAAAT 22170127 Score = 37.4 bits (40), Expect = 8.5 Identities = 37/47 (79%), Gaps = 2/47 (4%) Strand=Plus/Minus Query 2323 TATTATGGTTTTTATTGTTCAAATTTTCATCGAtttttttttttttG 2369 |||||| || ||||||||||||| || | || ||||| |||||| Sbjct 960866 TATTAT--TTGTTATTGTTCAAATGTTTTTTGACATTTTTATTTTTG 960822 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 942 CTTCACTTTCCCTTGAACAACACCA 966 ||||||||||||||||||| | ||| Sbjct 2725622 CTTCACTTTCCCTTGAACATCTCCA 2725646 Score = 37.4 bits (40), Expect = 8.5 Identities = 25/28 (89%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 2077 ATTTATAATTTTTATGAGtttttttCCA 2104 ||||||||||||||||| |||| || || Sbjct 4918619 ATTTATAATTTTTATGATTTTTATTTCA 4918646 Score = 37.4 bits (40), Expect = 8.5 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 419 TCTCTCTTTCTAATTTTCTTGTTTTCATTTTGGTT 453 ||||||| ||||||||||| |||||||| ||| Sbjct 7790862 TCTCTCTCCCTAATTTTCTTTGCTTCATTTTTGTT 7790828 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 77 AAGAAAAATATATAAACAAAATAAA 101 |||||||||||| |||||| ||||| Sbjct 9254552 AAGAAAAATATAGAAACAAGATAAA 9254528 Score = 37.4 bits (40), Expect = 8.5 Identities = 28/32 (88%), Gaps = 1/32 (3%) Strand=Plus/Plus Query 75 TTAAGAAAAATATATAAACAAAATAAATGCTT 106 |||||||||||| ||||| ||||||||| || Sbjct 9695068 TTAAGAAAAATAAATAAA-TAAATAAATGATT 9695098 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1694 GAGAGAGCGAAAGCTAGAGAAAGAG 1718 ||||||| |||||||||||| |||| Sbjct 12984854 GAGAGAGAGAAAGCTAGAGAGAGAG 12984878 Score = 37.4 bits (40), Expect = 8.5 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 1814 ATAATAAAGAATAATAATAGAAGCC 1838 ||||||| |||||||||||||||| Sbjct 18901645 ATAATAATTAATAATAATAGAAGCC 18901621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496005521214 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2