BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=35 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 55.4 1e-07 lcl|Jr6S 31.9 1.3 lcl|Jr8S 30.1 4.5 lcl|Jr8D 30.1 4.5 lcl|Jr7D 30.1 4.5 lcl|Jr5S 30.1 4.5 lcl|Jr4S 30.1 4.5 lcl|Jr3D 30.1 4.5 lcl|Jr2D 30.1 4.5 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 55.4 bits (60), Expect = 1e-07 Identities = 34/35 (97%), Gaps = 1/35 (3%) Strand=Plus/Plus Query 1 TACCCATAATCCCCCTTGAAGCCGATCAGCAAATA 35 |||||||||||||| |||||||||||||||||||| Sbjct 18452138 TACCCATAATCCCC-TTGAAGCCGATCAGCAAATA 18452171 Score = 31.9 bits (34), Expect = 1.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 4 CCATAATCCCCCTTGAA 20 ||||||||||||||||| Sbjct 2076670 CCATAATCCCCCTTGAA 2076686 Score = 30.1 bits (32), Expect = 4.5 Identities = 18/19 (95%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 5 CATAATCCCCCTTGAAGCC 23 ||||||||||||| ||||| Sbjct 31919105 CATAATCCCCCTTTAAGCC 31919087 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 31.9 bits (34), Expect = 1.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 13 CCCTTGAAGCCGATCAGCAA 32 ||||||||||||||||| || Sbjct 5285230 CCCTTGAAGCCGATCAGTAA 5285249 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 30.1 bits (32), Expect = 4.5 Identities = 18/19 (95%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 4 CCATAATCCCCCTTGAAGC 22 ||| ||||||||||||||| Sbjct 6951590 CCAAAATCCCCCTTGAAGC 6951572 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 30.1 bits (32), Expect = 4.5 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 8 AATCCCCCTTGAAGCCGATCAGCAAA 33 ||||| || |||| ||||||||||| Sbjct 15218329 AATCCAACTGGAAGTCGATCAGCAAA 15218304 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 30.1 bits (32), Expect = 4.5 Identities = 21/24 (88%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 12 CCCCTTGAAGCCGATCAGCAAATA 35 ||| ||||| || ||||||||||| Sbjct 21432639 CCCATTGAAACCCATCAGCAAATA 21432616 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 30.1 bits (32), Expect = 4.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 4 CCATAATCCCCCTTGAAGCCG 24 ||||||| ||||||| ||||| Sbjct 14460006 CCATAATACCCCTTGTAGCCG 14459986 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 30.1 bits (32), Expect = 4.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 12 CCCCTTGAAGCCGATCAGCAA 32 |||||| |||| ||||||||| Sbjct 19728315 CCCCTTCAAGCTGATCAGCAA 19728295 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 30.1 bits (32), Expect = 4.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 13 CCCTTGAAGCCGATCAGCAAA 33 |||||||||||||| || ||| Sbjct 17522367 CCCTTGAAGCCGATTAGTAAA 17522387 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 30.1 bits (32), Expect = 4.5 Identities = 21/24 (88%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 4 CCATAATCCCCCTTGAAGCCGATC 27 || ||||||| |||||||| |||| Sbjct 19413055 CCTTAATCCCTCTTGAAGCAGATC 19413078 Score = 30.1 bits (32), Expect = 4.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 13 CCCTTGAAGCCGATCAGCAAA 33 |||||||||||||| || ||| Sbjct 28171553 CCCTTGAAGCCGATTAGTAAA 28171533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5346701040 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2