BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=21 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm7D 33.3 0.20 lcl|Jm6S 33.3 0.20 lcl|Jm6D 33.3 0.20 lcl|Jm5S 33.3 0.20 lcl|Jm5D 33.3 0.20 lcl|Jm4D 33.3 0.20 lcl|Jm3S 33.3 0.20 lcl|Jm2S 33.3 0.20 lcl|Jm2D 33.3 0.20 lcl|Jm1S 33.3 0.20 lcl|Jm1D 33.3 0.20 lcl|Jm8D 31.7 0.61 lcl|Jm4S 31.7 0.61 lcl|JmScfU0007 30.1 1.8 lcl|JmScfU0027 28.5 5.5 lcl|JmScfU0018 28.5 5.5 lcl|JmScfU0012 28.5 5.5 lcl|JmScfU0008 28.5 5.5 lcl|JmScfU0003 28.5 5.5 lcl|Jm3D 28.5 5.5 >Query1 on lcl|Jm7D| Query1 on lcl|Jm7D Length=26765518 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 15977487 CCCTTGAAGCCGATTAGTAA 15977468 Score = 30.1 bits (18), Expect = 1.8 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGT 18 |||||||||||||||||| Sbjct 13394808 CCCTTGAAGCCGATTAGT 13394825 >Query1 on lcl|Jm6S| Query1 on lcl|Jm6S Length=22373256 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 4709427 CCCTTGAAGCCGATTAGTAA 4709408 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 5516879 CCCTTGAAGCCGATTAGTAA 5516898 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||| ||||||||| Sbjct 4369365 CCCTTGAAGCTGATTAGTAA 4369346 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 ||||||||| |||||||||| Sbjct 5212834 CCCTTGAAGTCGATTAGTAA 5212815 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 533811 CCCTTGAGGCCGATTAGTGAA 533831 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 542962 CCCTTGAGGCCGATTAGTGAA 542982 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 |||||||||| ||||||| || Sbjct 3199581 CCCTTGAAGCTGATTAGTGAA 3199561 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 4655759 CCCTTGAGGCCGATTAGTGAA 4655779 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 12158842 CCCTTGAAGCCGATTAGTAA 12158823 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 14130071 CCCTTGAAGCCGATTAGTAA 14130090 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 21274332 CCCTTGAAGCCGATTAGTAA 21274351 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 ||||||||||| |||||||| Sbjct 19519979 CCCTTGAAGCCAATTAGTAA 19519960 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 5505270 CCCTTGAGGCCGATTAGTGAA 5505250 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 5803148 CCCTTGAGGCCGATTAGTGAA 5803128 >Query1 on lcl|Jm5S| Query1 on lcl|Jm5S Length=32113326 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 20337956 CCCTTGAAGCCGATTAGTAA 20337975 Score = 31.7 bits (19), Expect = 0.61 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 |||||||||||||||||| || Sbjct 22846640 CCCTTGAAGCCGATTAGTGAA 22846620 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 22072346 CCCTTGAGGCCGATTAGTGAA 22072326 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 23623518 CCCTTGAAGCCGATTAGTAA 23623537 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||| ||| Sbjct 25975461 CCCTTGAAGCCGATTAATAA 25975480 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 23095388 CCCTTGAGGCCGATTAGTGAA 23095408 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 27626816 CCCTTGAAGCCGATTAGTAA 27626797 Score = 31.7 bits (19), Expect = 0.61 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 |||||||||| |||||||||| Sbjct 17563328 CCCTTGAAGCTGATTAGTAAA 17563348 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 12128036 CCCTTGAAGCCGATTAGTAA 12128055 Score = 31.7 bits (19), Expect = 0.61 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 |||||||||||||||||| || Sbjct 11660929 CCCTTGAAGCCGATTAGTGAA 11660909 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||| ||||||||| Sbjct 12119291 CCCTTGAAGCAGATTAGTAA 12119310 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 19846678 CCCTTGAAGCCGATTAGTAA 19846659 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 22227001 CCCTTGAAGCCGATTAGTAA 22226982 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 21611196 CCCTTGAGGCCGATTAGTGAA 21611216 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 25240023 CCCTTGAGGCCGATTAGTGAA 25240043 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 27693668 CCCTTGAAGCCGATTAGTAA 27693649 Score = 31.7 bits (19), Expect = 0.61 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 |||||||||||||||||| || Sbjct 25337940 CCCTTGAAGCCGATTAGTGAA 25337920 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 ||||||||||| |||||||| Sbjct 26895352 CCCTTGAAGCCAATTAGTAA 26895371 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 24870033 CCCTTGAGGCCGATTAGTGAA 24870013 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 26398745 CCCTTGAGGCCGATTAGTGAA 26398765 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||||| |||||||| || Sbjct 26890779 CCCTTGAAGTCGATTAGTGAA 26890759 Score = 28.5 bits (17), Expect = 5.5 Identities = 18/19 (95%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTA 19 ||||||||||||| ||||| Sbjct 27941660 CCCTTGAAGCCGAATAGTA 27941642 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 29464468 CCCTTGAGGCCGATTAGTGAA 29464488 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 12384346 CCCTTGAAGCCGATTAGTAA 12384365 Score = 31.7 bits (19), Expect = 0.61 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||||||| ||||||||| Sbjct 13137737 CCCTTGAAGCCAATTAGTAAA 13137757 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 8999681 CCCTTGAGGCCGATTAGTGAA 8999661 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 12551578 CCCTTGAGGCCGATTAGTGAA 12551558 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 12938708 CCCTTGAGGCCGATTAGTGAA 12938688 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 33.3 bits (20), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||||||||||||| Sbjct 13288283 CCCTTGAAGCCGATTAGTAA 13288264 Score = 31.7 bits (19), Expect = 0.61 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTA 19 ||||||||||||||||||| Sbjct 30074147 CCCTTGAAGCCGATTAGTA 30074165 >Query1 on lcl|Jm8D| Query1 on lcl|Jm8D Length=36225362 Score = 31.7 bits (19), Expect = 0.61 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||||||| ||||||||| Sbjct 17081027 CCCTTGAAGCCAATTAGTAAA 17081047 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 16845207 CCCTTGAGGCCGATTAGTGAA 16845227 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 17537058 CCCTTGAGGCCGATTAGTGAA 17537078 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 18833917 CCCTTGAGGCCGATTAGTGAA 18833897 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 31.7 bits (19), Expect = 0.61 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 |||||||||| |||||||||| Sbjct 17685891 CCCTTGAAGCAGATTAGTAAA 17685871 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2 CCTTGAAGCCGATTAGTAAA 21 |||||| ||||||||||||| Sbjct 17482074 CCTTGAGGCCGATTAGTAAA 17482055 >Query1 on lcl|JmScfU0007| Query1 on lcl|JmScfU0007 Length=77901 Score = 30.1 bits (18), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAA 20 |||||||||| ||||||||| Sbjct 69986 CCCTTGAAGCTGATTAGTAA 69967 >Query1 on lcl|JmScfU0027| Query1 on lcl|JmScfU0027 Length=42491 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 218 CCCTTGAGGCCGATTAGTGAA 198 >Query1 on lcl|JmScfU0018| Query1 on lcl|JmScfU0018 Length=50570 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 8104 CCCTTGAGGCCGATTAGTGAA 8084 >Query1 on lcl|JmScfU0012| Query1 on lcl|JmScfU0012 Length=56525 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 217 CCCTTGAGGCCGATTAGTGAA 197 >Query1 on lcl|JmScfU0008| Query1 on lcl|JmScfU0008 Length=74832 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 39750 CCCTTGAGGCCGATTAGTGAA 39770 >Query1 on lcl|JmScfU0003| Query1 on lcl|JmScfU0003 Length=134876 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 13514 CCCTTGAGGCCGATTAGTGAA 13534 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 16597526 CCCTTGAGGCCGATTAGTGAA 16597506 Score = 28.5 bits (17), Expect = 5.5 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 CCCTTGAAGCCGATTAGTAAA 21 ||||||| |||||||||| || Sbjct 17743337 CCCTTGAGGCCGATTAGTGAA 17743357 Lambda K H 1.10 0.333 0.549 Gapped Lambda K H 1.10 0.333 0.549 Effective search space used: 2111572556 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 1 -1 Gap Penalties: Existence: 5, Extension: 2