BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=135 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 244 1e-63 lcl|Jr2D 41.0 0.027 lcl|Jr8D 39.2 0.093 lcl|Jr7D 39.2 0.093 lcl|Jr3D 37.4 0.33 lcl|Jr6D 35.6 1.1 lcl|Jr3S 35.6 1.1 lcl|Jr2S 35.6 1.1 lcl|Jr1D 35.6 1.1 lcl|Jr8S 33.7 4.0 lcl|Jr7S 33.7 4.0 lcl|Jr5D 33.7 4.0 lcl|Jr4S 33.7 4.0 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 244 bits (270), Expect = 1e-63 Identities = 135/135 (100%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1 GTAAATACCATTGATCCTTTTTTCTTATTAGAGAAAAGTTTTCCCCCCTTCTCTTGTTGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18452435 GTAAATACCATTGATCCTTTTTTCTTATTAGAGAAAAGTTTTCCCCCCTTCTCTTGTTGT 18452494 Query 61 GCCTCTTTCTCTAGATCATAGGTTCTTAATTTGTGTATCAGAGTTACATATGATGATCAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18452495 GCCTCTTTCTCTAGATCATAGGTTCTTAATTTGTGTATCAGAGTTACATATGATGATCAC 18452554 Query 121 GTCCACGTGCTTTAG 135 ||||||||||||||| Sbjct 18452555 GTCCACGTGCTTTAG 18452569 Score = 39.2 bits (42), Expect = 0.093 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 48 CTTCTCTTGTTGTGCCTCTTTCTC 71 ||||||||||||||| |||||||| Sbjct 18588595 CTTCTCTTGTTGTGCTTCTTTCTC 18588618 Score = 35.6 bits (38), Expect = 1.1 Identities = 23/24 (96%), Gaps = 1/24 (4%) Strand=Plus/Plus Query 39 TTTTCC-CCCCTTCTCTTGTTGTG 61 |||||| ||||||||||||||||| Sbjct 26062092 TTTTCCTCCCCTTCTCTTGTTGTG 26062115 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 32 AGAAAAGTTTTCCCCCCTTCTCT 54 || |||| ||||||||||||||| Sbjct 34049933 AGGAAAGATTTCCCCCCTTCTCT 34049955 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 41.0 bits (44), Expect = 0.027 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 15 TCCTTTTTTCTTATTAGAGAAAAGTTTTCCCC 46 ||| ||||||||||| ||||||| ||||||| Sbjct 33144766 TCCCTTTTTCTTATTGGAGAAAACCTTTCCCC 33144735 Score = 35.6 bits (38), Expect = 1.1 Identities = 42/55 (76%), Gaps = 8/55 (15%) Strand=Plus/Plus Query 42 TCCCCCCTTCTCTTGTTGTGCCT---CTTTCTCTAGATCATAGGTTCTT-AATTT 92 |||| | |||||||||||| ||| |||||||| | ||| ||||| ||||| Sbjct 9686253 TCCCACTTTCTCTTGTTGTTCCTTCACTTTCTCTTG----TAGTTTCTTCAATTT 9686303 Score = 35.6 bits (38), Expect = 1.1 Identities = 27/32 (84%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 14 ATCCTTTTTTCTTATTAGAGAAAAGTTTTCCC 45 |||||||||||| | |||||||| |||| || Sbjct 24338212 ATCCTTTTTTCTAAAGAGAGAAAACTTTTTCC 24338243 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 32 AGAAAAGTTTTCCCCCCTTCTCT 54 || ||||||||||||| |||||| Sbjct 26683426 AGGAAAGTTTTCCCCCTTTCTCT 26683448 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 39.2 bits (42), Expect = 0.093 Identities = 24/26 (92%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 17 CTTTTTTCTTATTAGAGAAAAGTTTT 42 ||| |||||||||||||||| ||||| Sbjct 11936675 CTTGTTTCTTATTAGAGAAATGTTTT 11936700 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 50 TCTCTTGTTGTGCCTCTTTCTCT 72 |||||||| ||||||||||||| Sbjct 1371777 TCTCTTGTCATGCCTCTTTCTCT 1371799 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 78 ATAGGTTCTTAATTTGTGTATCA 100 |||| ||||||||||||||| || Sbjct 11665771 ATAGTTTCTTAATTTGTGTACCA 11665749 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 41 TTCCCCCCTTCTCTTGTTGTG 61 |||| |||||||||||||||| Sbjct 12799934 TTCCTCCCTTCTCTTGTTGTG 12799954 Score = 33.7 bits (36), Expect = 4.0 Identities = 26/30 (87%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 69 CTCTAGATCATAGGTTCTTAATTTGTGTAT 98 ||||||||||| | |||||||||||||| Sbjct 18611754 CTCTAGATCATCCAT-CTTAATTTGTGTAT 18611726 Score = 33.7 bits (36), Expect = 4.0 Identities = 23/25 (92%), Gaps = 1/25 (4%) Strand=Plus/Plus Query 7 ACCATTGATCCTTTTTTCTTATTAG 31 |||| ||| |||||||||||||||| Sbjct 29215163 ACCACTGA-CCTTTTTTCTTATTAG 29215186 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 39.2 bits (42), Expect = 0.093 Identities = 26/29 (90%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 22 TTCTTATTAGAGAAAAGTTTTCCCCCCTT 50 |||||||||||||||| |||| | ||||| Sbjct 28470417 TTCTTATTAGAGAAAACTTTTTCTCCCTT 28470389 Score = 35.6 bits (38), Expect = 1.1 Identities = 28/33 (85%), Gaps = 2/33 (6%) Strand=Plus/Plus Query 65 CTTTCTCTAGATCATAGGT--TCTTAATTTGTG 95 ||||||||||||||||| | |||| | ||||| Sbjct 18707346 CTTTCTCTAGATCATAGATAGTCTTTAATTGTG 18707378 Score = 33.7 bits (36), Expect = 4.0 Identities = 29/36 (81%), Gaps = 4/36 (11%) Strand=Plus/Minus Query 19 TTTTTCTTATTAGAGAAAAGTTTTCCCCCCTTCTCT 54 ||||| |||||| | |||||| ||||||||||| Sbjct 8852115 TTTTTTTTATTACA----AGTTTTTCCCCCTTCTCT 8852084 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 18 TTTTTTCTTATTAGAGAA 35 |||||||||||||||||| Sbjct 9049727 TTTTTTCTTATTAGAGAA 9049710 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 37.4 bits (40), Expect = 0.33 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 32 AGAAAAGTTTTCCCCCCTTCTCT 54 || |||||||||||||||||||| Sbjct 27761115 AGGAAAGTTTTCCCCCCTTCTCT 27761137 Score = 35.6 bits (38), Expect = 1.1 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 15 TCCTTTTTTCTTATTAGAGAAAAGTTT 41 |||| ||||||||||| ||||||||| Sbjct 21898307 TCCTGTTTTCTTATTATGGAAAAGTTT 21898281 Score = 33.7 bits (36), Expect = 4.0 Identities = 23/25 (92%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 52 TCTTGTTGTGCCTCTTTCTCTAGAT 76 |||| ||||| |||||||||||||| Sbjct 13153358 TCTT-TTGTGTCTCTTTCTCTAGAT 13153335 Score = 33.7 bits (36), Expect = 4.0 Identities = 28/34 (82%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 53 CTTGTTGTGCCTCTTTCTCTAGATCATAGGTTCT 86 |||||||| ||||||||||| ||| ||| ||| Sbjct 14260442 CTTGTTGTACCTCTTTCTCT---TCAAAGGGTCT 14260472 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 83 TTCTTAATTTGTGTATCA 100 |||||||||||||||||| Sbjct 22685858 TTCTTAATTTGTGTATCA 22685875 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 20 TTTTCTTATTAGAGAAAAGTTTT 42 |||| |||||||||||||| ||| Sbjct 26361790 TTTTTTTATTAGAGAAAAGCTTT 26361768 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 76 TCATAGGTTCTTAATTTGTGTAT 98 ||| ||||||||||||||| ||| Sbjct 26726527 TCAGAGGTTCTTAATTTGTCTAT 26726549 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 10 ATTGATCCTTTTTTCTTATTAGA 32 |||||||||||||| ||||| || Sbjct 28736135 ATTGATCCTTTTTTTTTATTGGA 28736157 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 35.6 bits (38), Expect = 1.1 Identities = 25/29 (86%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 22 TTCTTATTAGAGAAAAGTTTTCCCCCCTT 50 |||||||||||||||| |||| ||||| Sbjct 32372969 TTCTTATTAGAGAAAACTTTTTAGCCCTT 32372941 Score = 35.6 bits (38), Expect = 1.1 Identities = 31/37 (84%), Gaps = 4/37 (11%) Strand=Plus/Plus Query 11 TTGATCCTTTTTTCTTATTAGAGAAAAG--TTTTCCC 45 |||||| ||||||||||| ||||| || ||||||| Sbjct 34688579 TTGATCGTTTTTTCTTAT--GAGAAGAGGATTTTCCC 34688613 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 14 ATCCTTTTTTCTTATTAGAGA 34 ||||||||||||||| ||||| Sbjct 167190 ATCCTTTTTTCTTATGAGAGA 167170 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 41 TTCCCCCCTTCTCTTGTTGTG 61 |||| |||||||||||||||| Sbjct 17986941 TTCCTCCCTTCTCTTGTTGTG 17986921 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 35.6 bits (38), Expect = 1.1 Identities = 34/44 (77%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 18 TTTTTTCTTATTAGAGAAAAGTTTTCCCCCCTTCTCTTGTTGTG 61 |||| ||| ||| || ||||||||||| ||| || |||| || Sbjct 11739342 TTTTGTCTGATTTGAATAAAGTTTTCCCTCCTAGTCATGTTTTG 11739299 Score = 35.6 bits (38), Expect = 1.1 Identities = 31/37 (84%), Gaps = 4/37 (11%) Strand=Plus/Plus Query 41 TTCCCC---CCTTCTC-TTGTTGTGCCTCTTTCTCTA 73 |||||| ||||||| ||||| | |||||||||||| Sbjct 27529759 TTCCCCTTTCCTTCTCGTTGTTTTACCTCTTTCTCTA 27529795 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 35 AAAGTTTTCCCCCCTTCTCTTGT 57 ||||||||||||| ||| ||||| Sbjct 21868683 AAAGTTTTCCCCCTTTCGCTTGT 21868705 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 35.6 bits (38), Expect = 1.1 Identities = 28/33 (85%), Gaps = 3/33 (9%) Strand=Plus/Minus Query 15 TCCTTTT---TTCTTATTAGAGAAAAGTTTTCC 44 ||||||| ||||||||||| ||||| ||||| Sbjct 34917931 TCCTTTTCTATTCTTATTAGAAAAAAGGTTTCC 34917899 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 42 TCCCCCCTTCTCTTGTTGTGCCT 64 |||| |||||||||||||| ||| Sbjct 6351942 TCCCACCTTCTCTTGTTGTTCCT 6351964 Score = 33.7 bits (36), Expect = 4.0 Identities = 31/39 (79%), Gaps = 3/39 (8%) Strand=Plus/Plus Query 78 ATAGGTTCTTAATTTGTGTATCAGAGTTACATATGATGA 116 ||| ||||||| | |||||||| |||||||||||| Sbjct 11772523 ATATGTTCTTACTA---GTATCAGAACTACATATGATGA 11772558 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 35.6 bits (38), Expect = 1.1 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 27 ATTAGAGAAAAGTTTTCCCCCCTT 50 ||| ||||||||||||||||| || Sbjct 47635362 ATTGGAGAAAAGTTTTCCCCCATT 47635339 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 56 GTTGTGCCTCTTTCTCTAGAT 76 ||||||||||||| ||||||| Sbjct 8126188 GTTGTGCCTCTTTTTCTAGAT 8126168 Score = 33.7 bits (36), Expect = 4.0 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 39 TTTTCCCCCCTTCTCTTGTTGTGCCT 64 || ||||||||||||||||| | ||| Sbjct 21450371 TTGTCCCCCCTTCTCTTGTTTTCCCT 21450346 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 37 AGTTTTCCCCCCTTCTCT 54 |||||||||||||||||| Sbjct 3452231 AGTTTTCCCCCCTTCTCT 3452248 Score = 33.7 bits (36), Expect = 4.0 Identities = 30/37 (81%), Gaps = 3/37 (8%) Strand=Plus/Plus Query 19 TTTTTCTTATTAGAGAAAAGTTTTCCCCCCTTCTCTT 55 |||||||||||| | | ||||||||||| ||||| Sbjct 3461844 TTTTTCTTATTACA---AGTTTTTCCCCCCTCCTCTT 3461877 Score = 33.7 bits (36), Expect = 4.0 Identities = 29/36 (81%), Gaps = 4/36 (11%) Strand=Plus/Minus Query 19 TTTTTCTTATTAGAGAAAAGTTTTCCCCCCTTCTCT 54 ||||| |||| || |||||||||||||| |||| Sbjct 3487093 TTTTTTTTAT----GACAAGTTTTCCCCCCTCCTCT 3487062 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 36 AAGTTTTCCCCCCTTCTCTTGTT 58 ||||||||||||||| |||| || Sbjct 7988782 AAGTTTTCCCCCCTTTTCTTTTT 7988760 Score = 33.7 bits (36), Expect = 4.0 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 2 TAAATACCATTGATCCTTTTTTCTTATT 29 ||||| || || ||||||||||||||| Sbjct 11502441 TAAATCCCTTTCTTCCTTTTTTCTTATT 11502414 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 33.7 bits (36), Expect = 4.0 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 6 TACCATTGATCCTTTTTTCTTATTAG 31 |||| |||| ||||||||||| |||| Sbjct 1105323 TACCGTTGACCCTTTTTTCTTTTTAG 1105298 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 14 ATCCTTTTTTCTTATTAGAGA 34 ||||||||||||||| ||||| Sbjct 906963 ATCCTTTTTTCTTATGAGAGA 906943 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 64 TCTTTCTCTAGATCATAG 81 |||||||||||||||||| Sbjct 5015798 TCTTTCTCTAGATCATAG 5015781 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 20 TTTTCTTATTAGAGAAAAGTTTT 42 ||||||||||| | ||||||||| Sbjct 19860874 TTTTCTTATTAAACAAAAGTTTT 19860852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 57209677695 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2