BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=135 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm4D 149 7e-35 lcl|Jm2S 41.0 0.026 lcl|Jm2D 41.0 0.026 lcl|Jm3D 37.4 0.32 lcl|Jm1D 37.4 0.32 lcl|Jm8D 35.6 1.1 lcl|Jm7S 35.6 1.1 lcl|Jm7D 35.6 1.1 lcl|Jm5D 35.6 1.1 lcl|Jm8S 33.7 3.9 lcl|Jm6S 33.7 3.9 lcl|Jm6D 33.7 3.9 lcl|Jm5S 33.7 3.9 lcl|Jm4S 33.7 3.9 lcl|Jm1S 33.7 3.9 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 149 bits (164), Expect = 7e-35 Identities = 125/160 (78%), Gaps = 25/160 (16%) Strand=Plus/Plus Query 1 GTAAATACCATTGATCCTTTTTTCTTATTAGAGAAAAG---------------------- 38 |||||||||||||| ||||||||||||||| |||||| Sbjct 17666185 GTAAATACCATTGACCCTTTTTTCTTATTACAGAAAAAGAAAAGAAAAATACCAACTTTT 17666244 Query 39 ---TTTTCCCCCCTTCTCTTGTTGTGCCTCTTTCTCTAGATCATAGGTTCTTAATTTGTG 95 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17666245 TTTTTTTTTCCCCTTCTCTTGTTGTGCCTCTTTCTCTAGATCATAGGTTCTTAATTTGTG 17666304 Query 96 TATCAGAGTTACATATGATGATCACGTCCACGTGCTTTAG 135 |||| |||||| |||||||||||||| |||||| ||| || Sbjct 17666305 TATCTGAGTTATATATGATGATCACGCCCACGTACTTCAG 17666344 Score = 39.2 bits (42), Expect = 0.092 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 48 CTTCTCTTGTTGTGCCTCTTTCTC 71 ||||||||||||||| |||||||| Sbjct 17786569 CTTCTCTTGTTGTGCTTCTTTCTC 17786592 Score = 35.6 bits (38), Expect = 1.1 Identities = 23/24 (96%), Gaps = 1/24 (4%) Strand=Plus/Plus Query 39 TTTTCC-CCCCTTCTCTTGTTGTG 61 |||||| ||||||||||||||||| Sbjct 25752922 TTTTCCTCCCCTTCTCTTGTTGTG 25752945 Score = 33.7 bits (36), Expect = 3.9 Identities = 28/34 (82%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 53 CTTGTTGTGCCTCTTTCTCTAGATCATAGGTTCT 86 |||||||| ||||||||||| ||| ||| ||| Sbjct 20783871 CTTGTTGTACCTCTTTCTCT---TCAAAGGGTCT 20783901 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 41.0 bits (44), Expect = 0.026 Identities = 38/47 (81%), Gaps = 5/47 (11%) Strand=Plus/Minus Query 3 AAATACCATTGATC--CTTTT---TTCTTATTAGAGAAAAGTTTTCC 44 ||||| ||||||| ||||| ||||||||||| ||||| ||||| Sbjct 32284965 AAATAGGATTGATCTCCTTTTCTATTCTTATTAGAAAAAAGGTTTCC 32284919 Score = 35.6 bits (38), Expect = 1.1 Identities = 28/33 (85%), Gaps = 3/33 (9%) Strand=Plus/Plus Query 42 TCCCCCCTTCTCTTGTTGTGCCT---CTTTCTC 71 |||| |||||||||||||| ||| ||||||| Sbjct 6260294 TCCCACCTTCTCTTGTTGTTCCTTCACTTTCTC 6260326 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 41.0 bits (44), Expect = 0.026 Identities = 28/32 (88%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 15 TCCTTTTTTCTTATTAGAGAAAAGTTTTCCCC 46 ||| ||||||||||| ||||||| ||||||| Sbjct 32669190 TCCCTTTTTCTTATTGGAGAAAACCTTTCCCC 32669159 Score = 33.7 bits (36), Expect = 3.9 Identities = 28/34 (82%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 42 TCCCCCCTTCTCTTGTTGTGCCT---CTTTCTCT 72 |||| | |||||||||||| ||| |||||||| Sbjct 10103354 TCCCACTTTCTCTTGTTGTTCCTTCACTTTCTCT 10103387 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 37.4 bits (40), Expect = 0.32 Identities = 31/38 (82%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 15 TCCTTTTTTCTTATTAGAGAAAAGTTTTCCCCCCTTCT 52 || || ||| || |||| ||||| ||||||||||||| Sbjct 1983105 TCTTTATTTTTTGATAGATAAAAGATTTCCCCCCTTCT 1983068 Score = 35.6 bits (38), Expect = 1.1 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 15 TCCTTTTTTCTTATTAGAGAAAAGTTT 41 |||| ||||||||||| ||||||||| Sbjct 20885437 TCCTGTTTTCTTATTATGGAAAAGTTT 20885411 Score = 33.7 bits (36), Expect = 3.9 Identities = 31/37 (84%), Gaps = 2/37 (5%) Strand=Plus/Plus Query 97 ATCAGAGTTACATATGATGATCACGTCCACGTGCTTT 133 ||||| ||| |||||||||||||| ||||| |||| Sbjct 4340797 ATCAG-GTT-CATATGATGATCACTCCCACGCCCTTT 4340831 Score = 33.7 bits (36), Expect = 3.9 Identities = 28/34 (82%), Gaps = 3/34 (9%) Strand=Plus/Plus Query 53 CTTGTTGTGCCTCTTTCTCTAGATCATAGGTTCT 86 |||||||| ||||||||||| ||| ||| ||| Sbjct 14061318 CTTGTTGTACCTCTTTCTCT---TCAAAGGGTCT 14061348 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 32 AGAAAAGTTTTCCCCCCTTCTCT 54 || ||||||||||||| |||||| Sbjct 18061291 AGGAAAGTTTTCCCCCTTTCTCT 18061269 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 76 TCATAGGTTCTTAATTTGTGTAT 98 ||| ||||||||||||||| ||| Sbjct 25780025 TCAGAGGTTCTTAATTTGTCTAT 25780047 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 10 ATTGATCCTTTTTTCTTATTAGA 32 |||||||||||||| ||||| || Sbjct 28169863 ATTGATCCTTTTTTTTTATTGGA 28169885 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 37.4 bits (40), Expect = 0.32 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 19 TTTTTCTTATTAGAGAAAAGTTTTC 43 |||||||||||| |||||| ||||| Sbjct 42015306 TTTTTCTTATTAAAGAAAAATTTTC 42015282 Score = 35.6 bits (38), Expect = 1.1 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 65 CTTTCTCTAGATCATAGGTTCTTA 88 ||||||||| ||||||||||||| Sbjct 350639 CTTTCTCTATCTCATAGGTTCTTA 350616 Score = 35.6 bits (38), Expect = 1.1 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 24 CTTATTAGAGAAAAGTTTTCCCCC 47 ||||||||||||||||| || ||| Sbjct 512774 CTTATTAGAGAAAAGTTGTCACCC 512797 Score = 35.6 bits (38), Expect = 1.1 Identities = 28/33 (85%), Gaps = 2/33 (6%) Strand=Plus/Minus Query 1 GTAAATACCATTGATCCTT--TTTTCTTATTAG 31 |||||||||||| ||| || ||||||| |||| Sbjct 47370542 GTAAATACCATTAATCTTTTATTTTCTTTTTAG 47370510 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 56 GTTGTGCCTCTTTCTCTAGAT 76 ||||||||||||| ||||||| Sbjct 8156517 GTTGTGCCTCTTTTTCTAGAT 8156497 Score = 33.7 bits (36), Expect = 3.9 Identities = 23/25 (92%), Gaps = 1/25 (4%) Strand=Plus/Plus Query 2 TAAATACCATTGATCCTTTTTTCTT 26 |||||||||||||| ||||||||| Sbjct 9868819 TAAATACCATTGAT-GTTTTTTCTT 9868842 Score = 33.7 bits (36), Expect = 3.9 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 2 TAAATACCATTGATCCTTTTTTCTTATT 29 |||| |||||||| |||||||||||| Sbjct 33006248 TAAAAACCATTGAAGTTTTTTTCTTATT 33006221 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 32 AGAAAAGTTTTCCCCCCTTCTCT 54 || ||| |||||||||||||||| Sbjct 33386034 AGGAAATTTTTCCCCCCTTCTCT 33386056 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 27 ATTAGAGAAAAGTTTTCCCCC 47 ||| ||||||||||||||||| Sbjct 45619083 ATTGGAGAAAAGTTTTCCCCC 45619063 >Query1 on lcl|Jm8D| Query1 on lcl|Jm8D Length=36225362 Score = 35.6 bits (38), Expect = 1.1 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 7 ACCATTGATCCTTTTTTCTTATTA 30 ||||| ||||||||||| |||||| Sbjct 30075903 ACCATAGATCCTTTTTTATTATTA 30075926 Score = 35.6 bits (38), Expect = 1.1 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 7 ACCATTGATCCTTTTTTCTTATTA 30 ||||| ||||||||||| |||||| Sbjct 30110930 ACCATAGATCCTTTTTTATTATTA 30110953 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 78 ATAGGTTCTTAATTTGTGTATCA 100 |||| ||||||||||||||| || Sbjct 11962682 ATAGTTTCTTAATTTGTGTACCA 11962660 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 41 TTCCCCCCTTCTCTTGTTGTG 61 |||| |||||||||||||||| Sbjct 21745879 TTCCTCCCTTCTCTTGTTGTG 21745899 >Query1 on lcl|Jm7S| Query1 on lcl|Jm7S Length=21889424 Score = 35.6 bits (38), Expect = 1.1 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 30 AGAGAAAAGTTTTCCCCCC 48 ||||||||||||||||||| Sbjct 5422818 AGAGAAAAGTTTTCCCCCC 5422836 >Query1 on lcl|Jm7D| Query1 on lcl|Jm7D Length=26765518 Score = 35.6 bits (38), Expect = 1.1 Identities = 28/33 (85%), Gaps = 2/33 (6%) Strand=Plus/Plus Query 65 CTTTCTCTAGATCATAGGT--TCTTAATTTGTG 95 ||||||||||||||||| | |||| | ||||| Sbjct 17461667 CTTTCTCTAGATCATAGATAGTCTTTAATTGTG 17461699 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 5 ATACCATTGATCCTTTTTTCTTA 27 |||||||||||| |||| ||||| Sbjct 2902848 ATACCATTGATCATTTTGTCTTA 2902826 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 10 ATTGATCCTTTTTTCTTATTA 30 ||||||||||||||| ||||| Sbjct 5259576 ATTGATCCTTTTTTCCTATTA 5259556 Score = 33.7 bits (36), Expect = 3.9 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 18 TTTTTTCTTATTAGAGAA 35 |||||||||||||||||| Sbjct 8427590 TTTTTTCTTATTAGAGAA 8427573 Score = 33.7 bits (36), Expect = 3.9 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 45 CCCCTTCTCTTGTTGTGCCTCTTTCTCT 72 ||||||||||| || | | ||||||||| Sbjct 12189996 CCCCTTCTCTTCTTATCCTTCTTTCTCT 12189969 Score = 33.7 bits (36), Expect = 3.9 Identities = 26/30 (87%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 70 TCTAGATCATAGGTTCTTAATTTGTGTATC 99 |||| ||||| | | ||||||||||||||| Sbjct 14906618 TCTATATCATCGAT-CTTAATTTGTGTATC 14906646 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 14 ATCCTTTTTTCTTATTAGAGA 34 ||||||||||||||| ||||| Sbjct 15266435 ATCCTTTTTTCTTATGAGAGA 15266455 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 35.6 bits (38), Expect = 1.1 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 39 TTTTCCCCCCTTCTCTTGTTGT 60 |||||||||||| ||||||||| Sbjct 4569702 TTTTCCCCCCTTTTCTTGTTGT 4569681 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 41 TTCCCCCCTTCTCTTGTTGTG 61 |||| |||||||||||||||| Sbjct 12781321 TTCCTCCCTTCTCTTGTTGTG 12781301 Score = 33.7 bits (36), Expect = 3.9 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 35 AAAGTTTTCCCCCCTTCT 52 |||||||||||||||||| Sbjct 14690775 AAAGTTTTCCCCCCTTCT 14690758 >Query1 on lcl|Jm6S| Query1 on lcl|Jm6S Length=22373256 Score = 33.7 bits (36), Expect = 3.9 Identities = 32/39 (82%), Gaps = 4/39 (10%) Strand=Plus/Minus Query 3 AAATACCATTGATCCTTTT--TTCTTATTAGAGAAAAGT 39 |||| | ||||||||||| ||||| ||||||||||| Sbjct 12981311 AAATTCAATTGATCCTTTGCCTTCTT--TAGAGAAAAGT 12981275 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 33.7 bits (36), Expect = 3.9 Identities = 26/30 (87%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 69 CTCTAGATCATAGGTTCTTAATTTGTGTAT 98 ||||| |||||| | |||||||||||||| Sbjct 15493391 CTCTATATCATACAT-CTTAATTTGTGTAT 15493419 >Query1 on lcl|Jm5S| Query1 on lcl|Jm5S Length=32113326 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 20 TTTTCTTATTAGAGAAAAGTTTT 42 ||||||||||| ||||||| ||| Sbjct 28324942 TTTTCTTATTACAGAAAAGCTTT 28324964 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 14 ATCCTTTTTTCTTATTAGAGA 34 ||||||||||||||| ||||| Sbjct 851357 ATCCTTTTTTCTTATGAGAGA 851337 Score = 33.7 bits (36), Expect = 3.9 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 64 TCTTTCTCTAGATCATAG 81 |||||||||||||||||| Sbjct 5240952 TCTTTCTCTAGATCATAG 5240935 Score = 33.7 bits (36), Expect = 3.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 14 ATCCTTTTTTCTTATTAGAGA 34 ||||||||||||||| ||||| Sbjct 5939168 ATCCTTTTTTCTTATGAGAGA 5939148 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 33.7 bits (36), Expect = 3.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 78 ATAGGTTCTTAATTTGTGTATCA 100 |||| ||||||||||||||| || Sbjct 17932754 ATAGTTTCTTAATTTGTGTACCA 17932732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 56484384615 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2