BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=39 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 71.6 2e-12 lcl|Jr3D 35.6 0.15 lcl|Jr4S 33.7 0.52 lcl|Jr1S 33.7 0.52 lcl|Jr1D 33.7 0.52 lcl|Jr8S 31.9 1.8 lcl|Jr8D 31.9 1.8 lcl|Jr7S 31.9 1.8 lcl|Jr7D 31.9 1.8 lcl|Jr5D 31.9 1.8 lcl|Jr6S 30.1 6.3 lcl|Jr6D 30.1 6.3 lcl|Jr5S 30.1 6.3 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 71.6 bits (78), Expect = 2e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1 TGTTGTGCCTCTTTCTCTAGATCATAGGTTCTTAATTTG 39 ||||||||||||||||||||||||||||||||||||||| Sbjct 18452489 TGTTGTGCCTCTTTCTCTAGATCATAGGTTCTTAATTTG 18452527 Score = 33.7 bits (36), Expect = 0.52 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 3 TTGTGCCTCTTTCTCTAGATCA-TA-GGTTCTTAA 35 |||||||| |||||| |||||| || ||| ||||| Sbjct 13917320 TTGTGCCTTTTTCTCAAGATCACTATGGTCCTTAA 13917286 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 35.6 bits (38), Expect = 0.15 Identities = 25/29 (86%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCATAGGTTC 31 |||||| ||||||||| ||||||| ||| Sbjct 6665875 TTGTGCTGCTTTCTCTAAATCATAGTTTC 6665903 Score = 31.9 bits (34), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 3 TTGTGCCTCTTTCTCTAGAT 22 ||||| |||||||||||||| Sbjct 13153354 TTGTGTCTCTTTCTCTAGAT 13153335 Score = 30.1 bits (32), Expect = 6.3 Identities = 26/32 (81%), Gaps = 3/32 (9%) Strand=Plus/Plus Query 1 TGTTGTGCCTCTTTCTCTAGATCATAGGTTCT 32 |||||| ||||||||||| ||| ||| ||| Sbjct 14260444 TGTTGTACCTCTTTCTCT---TCAAAGGGTCT 14260472 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 33.7 bits (36), Expect = 0.52 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 10 TCTTTCTCTAGATCATAG 27 |||||||||||||||||| Sbjct 5015798 TCTTTCTCTAGATCATAG 5015781 Score = 31.9 bits (34), Expect = 1.8 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 6 TGCCTCTTTCTCTAGATCAT 25 ||||||||||||||| |||| Sbjct 9703176 TGCCTCTTTCTCTAGGTCAT 9703157 Score = 31.9 bits (34), Expect = 1.8 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 12 TTTCTCTAGATCATAGGTTCTTAATTT 38 || || |||||| ||||||||| |||| Sbjct 11852566 TTACTATAGATCTTAGGTTCTTTATTT 11852592 Score = 30.1 bits (32), Expect = 6.3 Identities = 21/24 (88%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 10 TCTTTCTCTAGATCATAGGTTCTT 33 |||||||||| ||| |||||||| Sbjct 5887463 TCTTTCTCTATCTCACAGGTTCTT 5887440 Score = 30.1 bits (32), Expect = 6.3 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 2 GTTGTGCCTCTTTCTCTAGATCATAG 27 |||||||||||| ||| || ||||| Sbjct 9979290 GTTGTGCCTCTTCCTCGCGAACATAG 9979315 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 33.7 bits (36), Expect = 0.52 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCATAGGTT 30 || ||| ||||| ||||| ||||||||| Sbjct 6413204 TTATGCTTCTTTTTCTAGTTCATAGGTT 6413231 Score = 30.1 bits (32), Expect = 6.3 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 17 CTAGATCATAGGTTCT 32 |||||||||||||||| Sbjct 23058025 CTAGATCATAGGTTCT 23058040 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 33.7 bits (36), Expect = 0.52 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 GTTGTGCCTCTTTCTCTAGAT 22 ||||||||||||| ||||||| Sbjct 8126188 GTTGTGCCTCTTTTTCTAGAT 8126168 Score = 33.7 bits (36), Expect = 0.52 Identities = 25/28 (89%), Gaps = 1/28 (4%) Strand=Plus/Minus Query 13 TTCTCTA-GATCATAGGTTCTTAATTTG 39 || |||| |||||||||| ||||||||| Sbjct 28627628 TTTTCTATGATCATAGGTACTTAATTTG 28627601 Score = 33.7 bits (36), Expect = 0.52 Identities = 25/28 (89%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 13 TTCTCTA-GATCATAGGTTCTTAATTTG 39 || |||| |||||||||| ||||||||| Sbjct 28924680 TTTTCTATGATCATAGGTACTTAATTTG 28924707 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 31.9 bits (34), Expect = 1.8 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 2 GTTGTGCCTCTTTCTCT 18 ||||||||||||||||| Sbjct 18028357 GTTGTGCCTCTTTCTCT 18028341 Score = 30.1 bits (32), Expect = 6.3 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 9 CTCTTTCTCTAGATCATAGGT 29 |||||||||||| ||||| || Sbjct 8313295 CTCTTTCTCTAGTTCATATGT 8313315 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 31.9 bits (34), Expect = 1.8 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 13 TTCTCTAGATCATAGGTTCTTAATTTG 39 |||||||||| ||||| | ||||| || Sbjct 30665894 TTCTCTAGATAATAGGATTTTAATATG 30665920 Score = 30.1 bits (32), Expect = 6.3 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 8 CCTCTTTCTCTAGATCATAGGTTCTT 33 ||||||||| |||||| ||| | ||| Sbjct 6559057 CCTCTTTCTTTAGATCCTAGATCCTT 6559032 Score = 30.1 bits (32), Expect = 6.3 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 18 TAGATCATAGGTTCTTAATTT 38 ||||||||| ||||| ||||| Sbjct 7514208 TAGATCATATGTTCTGAATTT 7514228 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 31.9 bits (34), Expect = 1.8 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Plus Query 6 TGCCTCTTTCTCTAGATCATAGGTTCTTA 34 ||| ||||||||||||| | |||||||| Sbjct 846543 TGCTTCTTTCTCTAGAT-TTTGGTTCTTA 846570 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 31.9 bits (34), Expect = 1.8 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 11 CTTTCTCTAGATCATAG 27 ||||||||||||||||| Sbjct 18707346 CTTTCTCTAGATCATAG 18707362 Score = 31.9 bits (34), Expect = 1.8 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 12 TTTCTCTAGATCATAGGTTCTTAATTT 38 || || |||||| ||||||||| |||| Sbjct 26410965 TTACTATAGATCTTAGGTTCTTTATTT 26410939 Score = 30.1 bits (32), Expect = 6.3 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 19 AGATCATAGGTTCTTAATTTG 39 ||||||| |||||||| |||| Sbjct 4681570 AGATCATTGGTTCTTATTTTG 4681590 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 31.9 bits (34), Expect = 1.8 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 9 CTCTTTCTCTAGATCATAGGTT 30 ||||||||| |||||||| ||| Sbjct 28856943 CTCTTTCTCAAGATCATATGTT 28856922 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 30.1 bits (32), Expect = 6.3 Identities = 29/35 (83%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCA-TA-GGTTCTTAA 35 |||||||| |||||| || ||| || ||| ||||| Sbjct 5683702 TTGTGCCTTTTTCTCAAGGTCACTATGGTCCTTAA 5683736 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 30.1 bits (32), Expect = 6.3 Identities = 18/19 (95%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 3 TTGTGCCTCTTTCTCTAGA 21 ||||||||||| ||||||| Sbjct 8148717 TTGTGCCTCTTCCTCTAGA 8148699 Score = 30.1 bits (32), Expect = 6.3 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 18 TAGATCATAGGTTCTTAATTT 38 |||||||| |||| ||||||| Sbjct 13650473 TAGATCATGGGTTTTTAATTT 13650453 Score = 30.1 bits (32), Expect = 6.3 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 18 TAGATCATAGGTTCTTAATTT 38 |||||||| |||| ||||||| Sbjct 13786755 TAGATCATGGGTTTTTAATTT 13786735 Score = 30.1 bits (32), Expect = 6.3 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 3 TTGTGCCTCTTTCTCTAGATCATAGG 28 || ||||||||| ||||| || |||| Sbjct 31574862 TTATGCCTCTTTTTCTAGTTCGTAGG 31574837 Score = 30.1 bits (32), Expect = 6.3 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCATAGG 28 || ||| ||||| ||||| ||||||| Sbjct 35366646 TTATGCTTCTTTTTCTAGTTCATAGG 35366671 Score = 30.1 bits (32), Expect = 6.3 Identities = 21/24 (88%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 10 TCTTTCTCTAGATCATAGGTTCTT 33 |||||||||| |||| ||||||| Sbjct 37492737 TCTTTCTCTATCTCATGGGTTCTT 37492760 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 30.1 bits (32), Expect = 6.3 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 12 TTTCTCTAGATCATAG 27 |||||||||||||||| Sbjct 28952784 TTTCTCTAGATCATAG 28952769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7485381456 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2