BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=39 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm4D 71.6 2e-12 lcl|Jm1D 35.6 0.15 lcl|Jm4S 33.7 0.51 lcl|Jm2D 33.7 0.51 lcl|Jm1S 33.7 0.51 lcl|Jm8D 31.9 1.8 lcl|Jm7D 31.9 1.8 lcl|Jm6S 31.9 1.8 lcl|Jm6D 31.9 1.8 lcl|Jm3S 31.9 1.8 lcl|Jm8S 30.1 6.2 lcl|Jm5S 30.1 6.2 lcl|Jm5D 30.1 6.2 lcl|Jm3D 30.1 6.2 lcl|Jm2S 30.1 6.2 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 71.6 bits (78), Expect = 2e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1 TGTTGTGCCTCTTTCTCTAGATCATAGGTTCTTAATTTG 39 ||||||||||||||||||||||||||||||||||||||| Sbjct 17666264 TGTTGTGCCTCTTTCTCTAGATCATAGGTTCTTAATTTG 17666302 Score = 39.2 bits (42), Expect = 0.012 Identities = 29/33 (88%), Gaps = 2/33 (6%) Strand=Plus/Plus Query 6 TGCCTCTTTCTCTAGATCATAGGTTCTTAATTT 38 |||||||||||| |||| ||| |||||||||| Sbjct 7574905 TGCCTCTTTCTC--GATCCTAGTTTCTTAATTT 7574935 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 TGTTGTGCCTCTTTCTCTAGA 21 |||||| ||||| |||||||| Sbjct 17580446 TGTTGTTCCTCTATCTCTAGA 17580466 Score = 30.1 bits (32), Expect = 6.2 Identities = 26/32 (81%), Gaps = 3/32 (9%) Strand=Plus/Plus Query 1 TGTTGTGCCTCTTTCTCTAGATCATAGGTTCT 32 |||||| ||||||||||| ||| ||| ||| Sbjct 20783873 TGTTGTACCTCTTTCTCT---TCAAAGGGTCT 20783901 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 35.6 bits (38), Expect = 0.15 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 11 CTTTCTCTAGATCATAGGTTCTTA 34 ||||||||| ||||||||||||| Sbjct 350639 CTTTCTCTATCTCATAGGTTCTTA 350616 Score = 33.7 bits (36), Expect = 0.51 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 2 GTTGTGCCTCTTTCTCTAGAT 22 ||||||||||||| ||||||| Sbjct 8156517 GTTGTGCCTCTTTTTCTAGAT 8156497 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 13 TTCTCTAGATCATAGGTTCTT 33 |||||||||||||| ||||| Sbjct 5782762 TTCTCTAGATCATATCTTCTT 5782782 Score = 30.1 bits (32), Expect = 6.2 Identities = 24/28 (86%), Gaps = 1/28 (4%) Strand=Plus/Plus Query 13 TTCTCTA-GATCATAGGTTCTTAATTTG 39 || |||| | |||||||| ||||||||| Sbjct 27287859 TTTTCTATGTTCATAGGTACTTAATTTG 27287886 Score = 30.1 bits (32), Expect = 6.2 Identities = 21/24 (88%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1 TGTTGTGCCTCTTTCTCTAGATCA 24 |||| |||||||| ||| |||||| Sbjct 42812138 TGTTCTGCCTCTTCCTCCAGATCA 42812115 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 33.7 bits (36), Expect = 0.51 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 10 TCTTTCTCTAGATCATAG 27 |||||||||||||||||| Sbjct 5240952 TCTTTCTCTAGATCATAG 5240935 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 33.7 bits (36), Expect = 0.51 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCA-TA-GGTTCTTAA 35 |||||||| |||||| ||| || || ||||||||| Sbjct 19537559 TTGTGCCTTTTTCTCAAGAGCACTATGGTTCTTAA 19537593 Score = 31.9 bits (34), Expect = 1.8 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 12 TTTCTCTAGATCATAGGTTCTT 33 |||||||| |||||||||||| Sbjct 26202074 TTTCTCTATCTCATAGGTTCTT 26202095 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 18 TAGATCATAGGTTCTTAATTT 38 |||||||||| || ||||||| Sbjct 15405035 TAGATCATAGTTTGTTAATTT 15405055 Score = 30.1 bits (32), Expect = 6.2 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 5 GTGCCTCTTTCTCTAGATCATAGGTT 30 |||||||| ||| |||||| || ||| Sbjct 22482866 GTGCCTCTATCTTTAGATCCTAAGTT 22482841 Score = 30.1 bits (32), Expect = 6.2 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 10 TCTTTCTCTAGATCATAGGTTCTTAA 35 ||||||| |||||||| | || |||| Sbjct 26112933 TCTTTCTTTAGATCATGGATTATTAA 26112958 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 33.7 bits (36), Expect = 0.51 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCATAGGTT 30 || ||| ||||| ||||| ||||||||| Sbjct 6318400 TTATGCTTCTTTTTCTAGTTCATAGGTT 6318427 Score = 33.7 bits (36), Expect = 0.51 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Minus Query 3 TTGTGCCTCTTTCTCTAGATCA-TA-GGTTCTTAA 35 |||||||| |||||| ||| || || ||||||||| Sbjct 8833319 TTGTGCCTTTTTCTCAAGAGCACTATGGTTCTTAA 8833285 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 19 AGATCATAGGTTCTTAATTTG 39 ||| || |||||||||||||| Sbjct 5994596 AGAGCAGAGGTTCTTAATTTG 5994616 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 10 TCTTTCTCTAGATCATAGGTT 30 |||||||||||||| ||| || Sbjct 10367438 TCTTTCTCTAGATCTTAGTTT 10367458 >Query1 on lcl|Jm8D| Query1 on lcl|Jm8D Length=36225362 Score = 31.9 bits (34), Expect = 1.8 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 13 TTCTCTAGATCATAGGTTCTTAATTTG 39 |||||||||| ||||| | ||||| || Sbjct 31475629 TTCTCTAGATAATAGGATTTTAATATG 31475655 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 4 TGTGCCTCTTTCTCTAGATCA 24 |||| |||| ||||||||||| Sbjct 1550098 TGTGTCTCTGTCTCTAGATCA 1550118 >Query1 on lcl|Jm7D| Query1 on lcl|Jm7D Length=26765518 Score = 31.9 bits (34), Expect = 1.8 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 11 CTTTCTCTAGATCATAG 27 ||||||||||||||||| Sbjct 17461667 CTTTCTCTAGATCATAG 17461683 >Query1 on lcl|Jm6S| Query1 on lcl|Jm6S Length=22373256 Score = 31.9 bits (34), Expect = 1.8 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 6 TGCCTCTTTCTCTAGATCATAGGTTCTTA 34 ||| ||||||||||||| | |||||||| Sbjct 13729004 TGCTTCTTTCTCTAGAT-TTTGGTTCTTA 13728977 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 31.9 bits (34), Expect = 1.8 Identities = 28/34 (82%), Gaps = 1/34 (3%) Strand=Plus/Minus Query 3 TTGTGCCTCTTTCTCTAGATCATAGGTTCTTAAT 36 |||||| |||| ||||||| ||| |||||||| Sbjct 8482009 TTGTGCATCTTCCTCTAGA-AATAAATTCTTAAT 8481977 Score = 31.9 bits (34), Expect = 1.8 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 22 TCATAGGTTCTTAATTT 38 ||||||||||||||||| Sbjct 26953013 TCATAGGTTCTTAATTT 26953029 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 18 TAGATCATAGGTTCTTAATTT 38 |||||||| |||| ||||||| Sbjct 13603989 TAGATCATGGGTTTTTAATTT 13603969 Score = 30.1 bits (32), Expect = 6.2 Identities = 22/26 (85%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCATAGG 28 || ||| ||||| ||||| ||||||| Sbjct 35659478 TTATGCTTCTTTTTCTAGTTCATAGG 35659503 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 31.9 bits (34), Expect = 1.8 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 4 TGTGCCTCTTTCTCTAGATCAT 25 |||| |||||||||||| |||| Sbjct 9058889 TGTGTCTCTTTCTCTAGCTCAT 9058868 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 30.1 bits (32), Expect = 6.2 Identities = 21/24 (88%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCATA 26 || |||| ||||| |||||||||| Sbjct 7469127 TTTTGCCCCTTTCCCTAGATCATA 7469150 >Query1 on lcl|Jm5S| Query1 on lcl|Jm5S Length=32113326 Score = 30.1 bits (32), Expect = 6.2 Identities = 29/35 (83%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 3 TTGTGCCTCTTTCTCTAGATCA-TA-GGTTCTTAA 35 |||||||| ||||||||| || || |||| |||| Sbjct 19021542 TTGTGCCTTTTTCTCTAGGGCACTATGGTTTTTAA 19021576 Score = 30.1 bits (32), Expect = 6.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 12 TTTCTCTAGATCATAG 27 |||||||||||||||| Sbjct 28773398 TTTCTCTAGATCATAG 28773383 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 12 TTTCTCTAGATCATAGGTTCT 32 ||| |||||||||||| |||| Sbjct 33684830 TTTTTCTAGATCATAGTTTCT 33684850 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 30.1 bits (32), Expect = 6.2 Identities = 26/32 (81%), Gaps = 3/32 (9%) Strand=Plus/Plus Query 1 TGTTGTGCCTCTTTCTCTAGATCATAGGTTCT 32 |||||| ||||||||||| ||| ||| ||| Sbjct 14061320 TGTTGTACCTCTTTCTCT---TCAAAGGGTCT 14061348 Score = 30.1 bits (32), Expect = 6.2 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 3 TTGTGCCTCTTTCTCT 18 |||||||||||||||| Sbjct 33797251 TTGTGCCTCTTTCTCT 33797236 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 30.1 bits (32), Expect = 6.2 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 TGTTGTGCCTCTTTCTCTAGA 21 |||||||| ||| |||||||| Sbjct 13419509 TGTTGTGCATCTATCTCTAGA 13419489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7390486698 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2