BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jm3101_genome.fa 154 sequences; 527,895,757 total letters Query= Length=404 Score E Sequences producing significant alignments: (Bits) Value lcl|Jm4D 307 4e-82 lcl|Jm1S 59.0 3e-07 lcl|Jm3D 53.6 1e-05 lcl|Jm2D 53.6 1e-05 lcl|Jm1D 50.0 2e-04 lcl|Jm2S 48.2 6e-04 lcl|Jm7D 46.4 0.002 lcl|Jm5D 46.4 0.002 lcl|Jm8D 42.8 0.026 lcl|Jm6S 42.8 0.026 lcl|Jm8S 39.2 0.32 lcl|Jm6D 37.4 1.1 lcl|Jm5S 37.4 1.1 lcl|Jm4S 37.4 1.1 lcl|Jm3S 35.6 3.9 >Query1 on lcl|Jm4D| Query1 on lcl|Jm4D Length=35629462 Score = 307 bits (340), Expect = 4e-82 Identities = 365/512 (71%), Gaps = 117/512 (23%) Strand=Plus/Plus Query 1 ACCGATGGGATGGGCTGCTCAGATATATTCTGAGTCGAGTGCTAGGATTGAGACGTGATG 60 ||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 17664046 ACCCATGGGATGCGCTGCTCAGACATATCCTGAGTCGAGTGCTAGGATTGAGACGTGATG 17664105 Query 61 ATCGCTTGCGTCCTACCTTTGTTTTTATTCTAATTTAGGATGTTCGTGGTGTCATATGTA 120 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 17664106 ATCACTTGCGTCCTACCTTTGTTTTTATTCTAATTTAGGATGTTCGTAGTGTCATATGTC 17664165 Query 121 GACACGTTTTACTAACTGATT--------------------GCGTTTGATTGttaaatta 160 ||||||||||||| ||| ||| | |||||||||||||||| Sbjct 17664166 GACACGTTTTACTGACTAATTATCTCAAGACTATTTAAGTTGTGTTTGATTGTTAAATTT 17664225 Query 161 aatttatttcaaataaattattaatcataaaatata-tat--------attttt------ 205 |||||||||||||| |||||||||| |||||||| ||| |||||| Sbjct 17664226 AATTTATTTCAAATTAATTATTAAT---AAAATATATTATTTTTTAAAATTTTTATAAAA 17664282 Query 206 ----taaatt-------------tttataaa----------aaaaaataaatttatttta 238 |||||| |||||| | ||||| |||||| |||| | Sbjct 17664283 AATTTAAATTCATCCCAATCTATTTTATATATTTTAACTTAAAAAATTAAATTCATTTCA 17664342 Query 239 at------------aaaattt--------------attaaatattattattaaCAACTCA 272 || ||| ||| || ||||| |||||||||||| | | Sbjct 17664343 ATTTAAAGAAAGTTAAACTTTTGTTAATGTGAACCATAAAATACTATTATTAACAATTGA 17664402 Query 273 ATAGAT-------------------TTGAAACGTAGCCATCACAAATGTTGTGCATGCTT 313 || || ||||||||||||||||| |||||||||| || Sbjct 17664403 ATTCATGATACAACTCAACTCAATGTTGAAACGTAGCCATCATAAATGTTGTGA----TT 17664458 Query 314 GGGATAATATTAGGTATGGCCTATGTGAATAGCACTGGC-AATGTCTCCTCTTAGCATCT 372 |||||||||||||||||||| | |||||||||||||||| |||||||||| ||| || | Sbjct 17664459 GGGATAATATTAGGTATGGCGTGTGTGAATAGCACTGGCAAATGTCTCCTTTTAACA--T 17664516 Query 373 CTGGCCTATGACAAAAGCTGATGTCGGCTAGC 404 ||||||||||||||||||||| |||||||||| Sbjct 17664517 CTGGCCTATGACAAAAGCTGACGTCGGCTAGC 17664548 Score = 46.4 bits (50), Expect = 0.002 Identities = 61/82 (74%), Gaps = 7/82 (9%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatttatttca---aataaattattaatcataaaata 194 ||||||||||| |||| |||| |||| | || | |||||| ||||| || |||| Sbjct 14975954 GATTGCGTTTGGATGTTGAATTGAATTGAGTTGAGATAATAAAATATTA---TTAGAATA 14975898 Query 195 tatatattttttaaatttttat 216 | ||| ||||| | ||| |||| Sbjct 14975897 T-TATTTTTTTAATATTATTAT 14975877 >Query1 on lcl|Jm1S| Query1 on lcl|Jm1S Length=30169828 Score = 59.0 bits (64), Expect = 3e-07 Identities = 85/115 (74%), Gaps = 14/115 (12%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatatat 197 || ||||||||||||| | ||| |||| | || || | |||| |||| || |||| || Sbjct 25269199 GACTGCGTTTGATTGTAAGATTTAATTAAGTTTAATTTAATT-TTAA--ATTAAATTTA- 25269254 Query 198 atattttttaaatttttataaaaaaaaataaatttattttaa--taaaatttatt 250 |||||| ||||||| ||| | ||||||||| |||| |||||||| || Sbjct 25269255 ATATTT----AATTTTT----AAATTATTAAATTTATCTTAATTTAAAATTTCTT 25269301 Score = 53.6 bits (58), Expect = 1e-05 Identities = 61/80 (76%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatatat 197 |||||||||||| ||||||||| |||| | || |||| | | || | || ||||| Sbjct 24856360 GATTGCGTTTGAATGTTAAATTGAATTGAGTTGAAATGATAAAATATTGTTATAATAT-- 24856303 Query 198 atattttttaa-atttttat 216 |||||||||| ||| |||| Sbjct 24856302 -TATTTTTTAATATTATTAT 24856284 Score = 41.0 bits (44), Expect = 0.092 Identities = 88/128 (69%), Gaps = 14/128 (11%) Strand=Plus/Minus Query 130 TACTAACTGATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcata 189 |||||| ||||||||||| |||| |||| |||| | | ||||| ||| | || Sbjct 953138 TACTAA--GATTGCGTTTGGATGTTGAATTGAATTGAAAT--GATAAAATAT---TGTTA 953086 Query 190 aaatatatatattttttaa----atttttataaaaaaaaataaatttattttaataaaat 245 ||||| |||||||||| ||| |||| |||| | ||||| || | ||| | Sbjct 953085 GAATAT---TATTTTTTAATATTATTATTATTTTAAAATTTGAATTTTTTATTATATTTT 953029 Query 246 ttattaaa 253 ||||||| Sbjct 953028 ATATTAAA 953021 Score = 37.4 bits (40), Expect = 1.1 Identities = 45/59 (76%), Gaps = 3/59 (5%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaa-ttattaatcataaaatat 195 |||||||||||| | || || |||||| | || || |||| | | | | ||||||||| Sbjct 21353527 GATTGCGTTTGAATATTGAAATAAATTGAGTTGAATTAAACTGAGT--TGATAAAATAT 21353583 >Query1 on lcl|Jm3D| Query1 on lcl|Jm3D Length=39900371 Score = 53.6 bits (58), Expect = 1e-05 Identities = 70/94 (74%), Gaps = 10/94 (11%) Strand=Plus/Plus Query 127 TTTTACTAACTGATTGCGTTTGATTGttaaattaaatttatttca---aataaattatta 183 ||||||| |||||||||||| ||||||| | |||| | || | |||||| ||||| Sbjct 14052714 TTTTACTTCTTGATTGCGTTTGGATGTTAAACTGAATTGAGTTGAGATAATAAAATATTA 14052773 Query 184 atcataaaatatatatattttttaa-atttttat 216 || ||||| |||||||||| ||| |||| Sbjct 14052774 ---TTAGAATAT---TATTTTTTAATATTATTAT 14052801 Score = 39.2 bits (42), Expect = 0.32 Identities = 39/51 (76%), Gaps = 5/51 (10%) Strand=Plus/Minus Query 140 TTGCGTTTGATTGtt-----aaattaaatttatttcaaataaattattaat 185 ||||||||||||||| ||||| || | || ||||| ||||||| || Sbjct 39316527 TTGCGTTTGATTGTTGAACCAAATTCAACTCATCTCAAACCAATTATTGAT 39316477 Score = 37.4 bits (40), Expect = 1.1 Identities = 60/83 (72%), Gaps = 10/83 (12%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttca---aataaattattaatcataaaata 194 ||||||||||| |||| | |||||| | || | ||||| ||||| || |||| Sbjct 9555110 GATTGCGTTTGGATGTTGATCTAAATTGAGTTGAGATGATAAAATATTA---TTAGAATA 9555166 Query 195 tatatattttttaa-atttttat 216 | |||||||||| ||| |||| Sbjct 9555167 T---TATTTTTTAATATTATTAT 9555186 >Query1 on lcl|Jm2D| Query1 on lcl|Jm2D Length=43614719 Score = 53.6 bits (58), Expect = 1e-05 Identities = 98/137 (72%), Gaps = 14/137 (10%) Strand=Plus/Minus Query 137 TGATTGCGTTT-GA--TTG--ttaaattaaatttatttcaaataaattattaatcataaa 191 ||||||||||| || ||| |||| ||||||||| | |||||| ||||| | | || Sbjct 10998029 TGATTGCGTTTAGACTTTGAATTAAGTTAAATTTAAAT--AATAAAATATTATTTTTTAA 10997972 Query 192 atatatatattttttaaatttttataaaaaaaaataaatt----tattt--taataaaat 245 ||| || ||||||| ||| | |||| |||| | || ||||| || |||||| Sbjct 10997971 TATTATTAATATTTTAAAATTTAAAAAAATTAAATTATTTATTATATTTTATATTAAAAT 10997912 Query 246 ttattaaatattattat 262 ||| ||| ||||| || Sbjct 10997911 TTA-AAAAAATTATAAT 10997896 Score = 41.0 bits (44), Expect = 0.092 Identities = 94/137 (69%), Gaps = 16/137 (12%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaa----taaattattaatcataaaat 193 ||||||||||| |||| |||| || | || | | |||| |||| || | ||| Sbjct 16208545 GATTGCGTTTGGATGTTGAATTGAAATGATAAAATATTGTTAAAATATT-ATTTTTTAAT 16208603 Query 194 atatatatt-ttttaaatttttataaaaaaaaataaatttatt-------ttaataaaat 245 || |||| ||||||| ||||| |||| |||| |||||| ||| |||||| Sbjct 16208604 ATTATTATTATTTTAAAATTTTAAAAAATTAAAT-TTTTTATTATCTTTATTATTAAAAT 16208662 Query 246 ttattaaatattattat 262 ||| ||| ||||| || Sbjct 16208663 TTA--AAAAATTATAAT 16208677 Score = 37.4 bits (40), Expect = 1.1 Identities = 107/157 (68%), Gaps = 21/157 (13%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttca--aata-aattatt---aat-----c 186 || ||||||||||| | ||||| | | | |||| | || |||| || ||| Sbjct 9284702 GAGTGCGTTTGATTATCAAATTCATCTCAATTCATTATTATAATTTTTTTAAATTTCAAT 9284761 Query 187 ataaaatat-atatattttttaaatttttataa----aaaaaaataaatttattttaata 241 | ||||||| ||| || ||||| ||||| || |||| ||||| |||| || | Sbjct 9284762 ACAAAATATAATAAATAATTTAATTTTTTCAAATTTTAAAATAATAATAATATTAAAAAA 9284821 Query 242 aaatttatta--aatattattat--taaCAACTCAAT 274 ||| | ||| |||||| |||| | |||||||||| Sbjct 9284822 TAATATTTTAACAATATT-TTATCATCACAACTCAAT 9284857 Score = 37.4 bits (40), Expect = 1.1 Identities = 57/79 (72%), Gaps = 8/79 (10%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatatat 197 ||||||||||| ||||||| | | || | | |||||| ||| | |||||||| Sbjct 16374368 GATTGCGTTTGGATGTTAAACTGAGTTGAGAT--AATAAAATAT---TGTTAAAATAT-- 16374420 Query 198 atattttttaaatttttat 216 ||||||| | ||| |||| Sbjct 16374421 -TATTTTTAATATTATTAT 16374438 >Query1 on lcl|Jm1D| Query1 on lcl|Jm1D Length=49856174 Score = 50.0 bits (54), Expect = 2e-04 Identities = 75/105 (71%), Gaps = 9/105 (9%) Strand=Plus/Minus Query 141 TGCGTTTGATTGtta-----aattaaatttatttcaaataaattattaatcataaaatat 195 ||||||||||||||| | | ||||||||| |||| |||||| | | | || Sbjct 5607371 TGCGTTTGATTGTTAGAGTGAGCTTAATTTATTTTAAATTAATTAT---TGACGAGATTC 5607315 Query 196 atatattttttaaatttttataaaaaaaaataaatttattttaat 240 || |||||||| ||||| | ||||| | |||| | |||| ||| Sbjct 5607314 AT-TATTTTTTTAATTTCTCATAAAAAGATTAAACTCATTTGAAT 5607271 Score = 46.4 bits (50), Expect = 0.002 Identities = 62/83 (75%), Gaps = 10/83 (12%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttca---aataaattattaatcataaaata 194 ||||||||||| ||||||| | |||| | || | |||||| ||||| || |||| Sbjct 46003502 GATTGCGTTTGGATGTTAAACTGAATTGAGTTGAGATAATAAAATATTA---TTAGAATA 46003558 Query 195 tatatattttttaa-atttttat 216 | |||||||||| ||| |||| Sbjct 46003559 T---TATTTTTTAATATTATTAT 46003578 Score = 39.2 bits (42), Expect = 0.32 Identities = 62/86 (72%), Gaps = 11/86 (13%) Strand=Plus/Minus Query 132 CTAACTGATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaa 191 |||||| ||||||||||| |||| || | | || | || | ||| || ||||| Sbjct 43751955 CTAACT-ATTGCGTTTGAATGTTGAACTGAGTTGAGTTGAGTTAA------GATGATAAA 43751903 Query 192 atatatatattttttaa-atttttat 216 |||| |||||||||| ||| |||| Sbjct 43751902 ATAT---TATTTTTTAATATTATTAT 43751880 Score = 39.2 bits (42), Expect = 0.32 Identities = 62/86 (72%), Gaps = 11/86 (13%) Strand=Plus/Minus Query 132 CTAACTGATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaa 191 |||||| ||||||||||| |||| || | | || | || | ||| || ||||| Sbjct 43779887 CTAACT-ATTGCGTTTGAATGTTGAACTGAGTTGAGTTGAGTTAA------GATGATAAA 43779835 Query 192 atatatatattttttaa-atttttat 216 |||| |||||||||| ||| |||| Sbjct 43779834 ATAT---TATTTTTTAATATTATTAT 43779812 Score = 35.6 bits (38), Expect = 3.9 Identities = 33/41 (80%), Gaps = 1/41 (2%) Strand=Plus/Minus Query 240 taaaatttattaaatattattattaaCAACTCAATAGATTT 280 ||| ||||| || | ||||| |||| || ||||||||||| Sbjct 16599271 TAATATTTAAGAAGTTTTATT-TTAAAAATTCAATAGATTT 16599232 Score = 35.6 bits (38), Expect = 3.9 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatt 164 |||||||||||| | ||||||| |||| Sbjct 22239440 GATTGCGTTTGAATATTAAATTGAATT 22239414 Score = 35.6 bits (38), Expect = 3.9 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 78 TTTGTTTTTATTCTAATTTAGGAT 101 ||||||||| ||||||||||| || Sbjct 42065702 TTTGTTTTTTTTCTAATTTAGCAT 42065679 >Query1 on lcl|Jm2S| Query1 on lcl|Jm2S Length=34707362 Score = 48.2 bits (52), Expect = 6e-04 Identities = 62/82 (76%), Gaps = 8/82 (10%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaa---ataaattattaatcataaaata 194 |||||||||||| ||||||| | | || | || || ||||| ||||| ||||||| Sbjct 3620710 GATTGCGTTTGAATGTTAAACTGAGTTGAATTAAAATGATAAAATATTA---TTAAAATA 3620766 Query 195 tatatattttttaaatttttat 216 | || |||||| | ||| |||| Sbjct 3620767 T-TA-ATTTTTAATATTATTAT 3620786 Score = 42.8 bits (46), Expect = 0.026 Identities = 87/127 (69%), Gaps = 22/127 (17%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatttatttca---aataaattattaatcataaaata 194 |||||||||||| | ||| ||| | || | || | ||||| ||||| ||||||| Sbjct 3682906 GATTGCGTTTGAATATTAGATTGAGTTGAGTTGAGATGATAAAATATTA---TTAAAATA 3682850 Query 195 tatatattttttaa-------atttttataa-----aaaaaaataaatttattttaataa 242 | |||||||||| ||| || ||| |||||||| || ||| |||| || Sbjct 3682849 T---TATTTTTTAATAATATTATTATTTTAAAATTTAAAAAAATTAAATTA-TTTATTAT 3682794 Query 243 aatttat 249 | ||||| Sbjct 3682793 ATTTTAT 3682787 Score = 37.4 bits (40), Expect = 1.1 Identities = 69/98 (70%), Gaps = 15/98 (15%) Strand=Plus/Plus Query 126 GTTTTACTAACTGATTGCGTTTGATTGttaaattaaatttatttca------aataaatt 179 |||||| ||| ||||||||||| |||| |||| | || | || | |||||| | Sbjct 28471621 GTTTTATTAA--GATTGCGTTTGGATGTTGAATTGAGTTAAGTTGAGAGTTGAATAAAAT 28471678 Query 180 attaatcataaaatatatatattttttaa-atttttat 216 || | || ||||| |||||||||| ||| |||| Sbjct 28471679 AT---TGTTAGAATAT---TATTTTTTAATATTATTAT 28471710 Score = 35.6 bits (38), Expect = 3.9 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 84 TTTATTCTAATTTAGGATG 102 ||||||||||||||||||| Sbjct 999540 TTTATTCTAATTTAGGATG 999558 Score = 35.6 bits (38), Expect = 3.9 Identities = 57/80 (71%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatatat 197 ||||||||||| |||| |||| | || | || | || | | || | || ||||| Sbjct 27659242 GATTGCGTTTGGATGTTGAATTGAGTTGAGTTGAGATGATAAAATATTGTTAGAATAT-- 27659185 Query 198 atattttttaa-atttttat 216 |||||||||| ||| |||| Sbjct 27659184 -TATTTTTTAATATTATTAT 27659166 >Query1 on lcl|Jm7D| Query1 on lcl|Jm7D Length=26765518 Score = 46.4 bits (50), Expect = 0.002 Identities = 36/43 (84%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 137 TGATTGCGTTTGATTGttaaattaaatttatttcaaataaatt 179 || |||||||||||| ||||||| |||| | ||||| | |||| Sbjct 4445929 TGGTTGCGTTTGATTTTTAAATTTAATTGAGTTCAACTGAATT 4445971 Score = 44.6 bits (48), Expect = 0.008 Identities = 64/87 (74%), Gaps = 10/87 (11%) Strand=Plus/Minus Query 139 ATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatat--- 195 ||||||||||| |||| || |||||| | || || | | || ||| ||||||||| Sbjct 9616020 ATTGCGTTTGAATGTTGAAGTAAATTGAATTGAATTGAGTT-GAAATGATAAAATATTAT 9615962 Query 196 ----ata-tattttttaa-atttttat 216 ||| |||||||||| ||| |||| Sbjct 9615961 TAAAATATTATTTTTTAATATTATTAT 9615935 >Query1 on lcl|Jm5D| Query1 on lcl|Jm5D Length=35798223 Score = 46.4 bits (50), Expect = 0.002 Identities = 63/84 (75%), Gaps = 7/84 (8%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcata----aaat 193 |||||||||||| ||||||| | |||| | || | || | || ||| |||| || Sbjct 7337401 GATTGCGTTTGAATGTTAAACTGAATTGAGTTGAGATGAGATAGTAA-CATATTGTTAAA 7337343 Query 194 atatatattttttaa-atttttat 216 |||| |||||||||| ||| |||| Sbjct 7337342 ATAT-TATTTTTTAATATTATTAT 7337320 >Query1 on lcl|Jm8D| Query1 on lcl|Jm8D Length=36225362 Score = 42.8 bits (46), Expect = 0.026 Identities = 97/140 (69%), Gaps = 21/140 (15%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaatt--attaatcataaaatat 195 |||||||||||||| | ||| | ||||||| | | || ||| ||||| ||| Sbjct 25835512 GATTGCGTTTGATT-----ACTAATTACATTTCAACTCATTTTAATTCATCAT----TAT 25835462 Query 196 atatattttttaaatttt--tataaaaaaaaataaat--tt--attttaataaaatttat 249 | ||||||||||| || ||||| | | ||||||| || | ||| ||| |||| Sbjct 25835461 A---ATTTTTTAAATCTTAATATAAGATATAATAAATAATTCAACTTTTTCAAATTTTAA 25835405 Query 250 ta-aatattattattaaCAA 268 | |||| || |||||| || Sbjct 25835404 AATAATAATAATATTAAAAA 25835385 Score = 37.4 bits (40), Expect = 1.1 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 75 ACCTTTGTTTTTATTCTAATTTAGG 99 || || ||||||||||||||||||| Sbjct 29517314 ACTTTAGTTTTTATTCTAATTTAGG 29517338 Score = 37.4 bits (40), Expect = 1.1 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 75 ACCTTTGTTTTTATTCTAATTTAGG 99 || || ||||||||||||||||||| Sbjct 29563153 ACTTTAGTTTTTATTCTAATTTAGG 29563177 Score = 35.6 bits (38), Expect = 3.9 Identities = 57/80 (71%), Gaps = 4/80 (5%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatatat 197 ||||||||||| |||| || | | || | || | |||| | || | || ||||| Sbjct 12482122 GATTGCGTTTGGATGTTGAAGTGAGTTGAGTTAAGATAATAAAATATTGTTAGAATAT-- 12482179 Query 198 atattttttaa-atttttat 216 |||||||||| ||| |||| Sbjct 12482180 -TATTTTTTAATATTATTAT 12482198 >Query1 on lcl|Jm6S| Query1 on lcl|Jm6S Length=22373256 Score = 42.8 bits (46), Expect = 0.026 Identities = 91/134 (68%), Gaps = 19/134 (14%) Strand=Plus/Minus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatat-- 195 ||||||||||| |||| |||| | || | || || | |||| ||| ||||||||| Sbjct 15755316 GATTGCGTTTGGATGTTGAATTGAGTTGAGTTAAATTTAATT-GAAATGATAAAATATTA 15755258 Query 196 -----ata-tattttttaa-attttta---------taaaaaaaaataaatttattttaa 239 ||| |||||||||| ||| ||| | ||||||| |||||| || | | Sbjct 15755257 TTAAAATATTATTTTTTAATATTATTATTTTGAGATTTAAAAAAATTAAATTGTTTATTA 15755198 Query 240 taaaatttattaaa 253 || | ||||||| Sbjct 15755197 TATTTTATATTAAA 15755184 Score = 35.6 bits (38), Expect = 3.9 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 78 TTTGTTTTTATTCTAATTTAGG 99 ||||||||||||||||||| || Sbjct 9348211 TTTGTTTTTATTCTAATTTTGG 9348190 Score = 35.6 bits (38), Expect = 3.9 Identities = 35/44 (80%), Gaps = 1/44 (2%) Strand=Plus/Plus Query 141 TGCGTTTGATTGttaaattaaatttatttcaaataaattattaa 184 ||||||||||| ||||| | |||| | |||| | |||| |||| Sbjct 13137034 TGCGTTTGATTCTTAAACTCAATTGAGCTCAATTTAATT-TTAA 13137076 Score = 35.6 bits (38), Expect = 3.9 Identities = 30/36 (83%), Gaps = 2/36 (6%) Strand=Plus/Plus Query 92 AATTTAGGATGTTCGTGGTGTCAT--ATGTAGACAC 125 ||||||||||||| ||| |||||| ||| || ||| Sbjct 22069270 AATTTAGGATGTTTGTGTTGTCATGCATGCAGCCAC 22069305 >Query1 on lcl|Jm8S| Query1 on lcl|Jm8S Length=19962766 Score = 39.2 bits (42), Expect = 0.32 Identities = 66/92 (72%), Gaps = 13/92 (14%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaatt-att---aatcataaaat 193 ||||||||||| |||| || |||||| | || | |||||| | | || ||||||| Sbjct 3750451 GATTGCGTTTGTATGTTGAAGTAAATTGACTTGAGTTAAATTGAGTTGAGATGATAAAAT 3750510 Query 194 at-------ata-tattttttaa-atttttat 216 || ||| |||||||||| ||| |||| Sbjct 3750511 ATTGTTAGAATATTATTTTTTAATATTATTAT 3750542 >Query1 on lcl|Jm6D| Query1 on lcl|Jm6D Length=38364907 Score = 37.4 bits (40), Expect = 1.1 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 140 TTGCGTTTGATTGttaaattaaatt 164 |||||||||||||| ||||| |||| Sbjct 33714071 TTGCGTTTGATTGTAAAATTTAATT 33714095 >Query1 on lcl|Jm5S| Query1 on lcl|Jm5S Length=32113326 Score = 37.4 bits (40), Expect = 1.1 Identities = 53/73 (73%), Gaps = 9/73 (12%) Strand=Plus/Minus Query 139 ATTGCGTTTGATTGttaaattaaatttatttcaa---ataaattattaatcataaaatat 195 ||||||||||| |||| || | | || | || || ||||| |||| || |||| || Sbjct 27382491 ATTGCGTTTGAATGTTGAACTGAGTTGAGTTAAAATGATAAAATATT-ATTATAATAT-- 27382435 Query 196 atatattttttaa 208 |||||||||| Sbjct 27382434 ---TATTTTTTAA 27382425 >Query1 on lcl|Jm4S| Query1 on lcl|Jm4S Length=27577207 Score = 37.4 bits (40), Expect = 1.1 Identities = 63/88 (72%), Gaps = 10/88 (11%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttcaaataaattattaatcataaaatat-- 195 ||||||||||| ||||||| | | || | || | ||| || | || ||||||||| Sbjct 8894059 GATTGCGTTTGGATGTTAAAGTGAGTTGAGTTGAGTTAAGTTGAT-ATGATAAAATATTA 8894117 Query 196 -----ata-tattttttaa-atttttat 216 ||| |||||||||| ||| |||| Sbjct 8894118 TTAGAATATTATTTTTTAATATTATTAT 8894145 Score = 37.4 bits (40), Expect = 1.1 Identities = 62/88 (70%), Gaps = 15/88 (17%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaattaaatttatttca--------aataaattattaatcata 189 |||||||||||| | ||||| ||| || | || | |||||| ||||| || Sbjct 18139364 GATTGCGTTTGAATATTAAAATAAGTTGAGTTGAGTTGAGATAATAAAATATTA---TTA 18139420 Query 190 aaatatatatattttttaa-atttttat 216 ||||| |||||||||| ||| |||| Sbjct 18139421 GAATAT---TATTTTTTAATATTATTAT 18139445 Score = 35.6 bits (38), Expect = 3.9 Identities = 63/90 (70%), Gaps = 19/90 (21%) Strand=Plus/Plus Query 138 GATTGCGTTTGATTGttaaa----------ttaaatttatttcaaataaattattaatca 187 ||||||||||| ||||||| |||| |||| || ||||| ||||| Sbjct 19785072 GATTGCGTTTGGATGTTAAACTGAGTTGAGTTAAGTTTAGTT--GATAAAATATTA---T 19785126 Query 188 taaaatatatatattttttaa-atttttat 216 |||||||| |||||||||| ||| |||| Sbjct 19785127 TAAAATAT---TATTTTTTAATATTATTAT 19785153 >Query1 on lcl|Jm3S| Query1 on lcl|Jm3S Length=27832763 Score = 35.6 bits (38), Expect = 3.9 Identities = 39/51 (76%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 235 tttaataaaatt-tattaaatattattattaaCAACTCAATAGATTTGAAA 284 |||| |||||| |||||| | |||| |||| | | | ||||||||||| Sbjct 19372692 TTTATAAAAATTATATTAATTTTTATGTTTAAATAATGATTAGATTTGAAA 19372642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197431285238 Database: Jm3101_genome.fa Posted date: Apr 26, 2019 3:00 PM Number of letters in database: 527,895,757 Number of sequences in database: 154 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2