BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: JrSerr_genome.fa
           73 sequences; 534,671,929 total letters



Query= 
Length=143
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

lcl|Jr4D                                                               259    6e-68
lcl|JrScfU0001                                                        33.7    4.3  
lcl|Jr8S                                                              33.7    4.3  
lcl|Jr8D                                                              33.7    4.3  
lcl|Jr3S                                                              33.7    4.3  
lcl|Jr1D                                                              33.7    4.3  


>Query1 on lcl|Jr4D| Query1 on lcl|Jr4D 
Length=35878018

 Score =  259 bits (286),  Expect = 6e-68
 Identities = 143/143 (100%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  1         TTAACAACTCAATAGATTTGAAACGTAGCCATCACAAATGTTGTGCATGCTTGGGATAAT  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18451054  TTAACAACTCAATAGATTTGAAACGTAGCCATCACAAATGTTGTGCATGCTTGGGATAAT  18451113

Query  61        ATTAGGTATGGCCTATGTGAATAGCACTGGCAATGTCTCCTCTTAGCATCTCTGGCCTAT  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18451114  ATTAGGTATGGCCTATGTGAATAGCACTGGCAATGTCTCCTCTTAGCATCTCTGGCCTAT  18451173

Query  121       GACAAAAGCTGATGTCGGCTAGC  143
                 |||||||||||||||||||||||
Sbjct  18451174  GACAAAAGCTGATGTCGGCTAGC  18451196


 Score = 33.7 bits (36),  Expect = 4.3
 Identities = 23/26 (88%), Gaps = 0/26 (0%)
 Strand=Plus/Minus

Query  39       TGTTGTGCATGCTTGGGATAATATTA  64
                ||||  |||||||||||||| |||||
Sbjct  1524957  TGTTCAGCATGCTTGGGATATTATTA  1524932


>Query1 on lcl|JrScfU0001| Query1 on lcl|JrScfU0001 
Length=1158772

 Score = 33.7 bits (36),  Expect = 4.3
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Plus

Query  6       AACTCAATAGATTTGAAACGT  26
               |||||||||||||| ||||||
Sbjct  590780  AACTCAATAGATTTCAAACGT  590800


>Query1 on lcl|Jr8S| Query1 on lcl|Jr8S 
Length=19617005

 Score = 33.7 bits (36),  Expect = 4.3
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  1         TTAACAACTCAATAGATT  18
                 ||||||||||||||||||
Sbjct  14353705  TTAACAACTCAATAGATT  14353688


>Query1 on lcl|Jr8D| Query1 on lcl|Jr8D 
Length=35197335

 Score = 33.7 bits (36),  Expect = 4.3
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  35        CAAATGTTGTGCATGCTTGGGAT  57
                 |||||||||||||| || |||||
Sbjct  19511950  CAAATGTTGTGCATTCTAGGGAT  19511972


>Query1 on lcl|Jr3S| Query1 on lcl|Jr3S 
Length=28458890

 Score = 33.7 bits (36),  Expect = 4.3
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  1        TTAACAACTCAATAGATTTGAAA  23
                |||| ||||||||||| ||||||
Sbjct  4810569  TTAAAAACTCAATAGAATTGAAA  4810547


>Query1 on lcl|Jr1D| Query1 on lcl|Jr1D 
Length=51893103

 Score = 33.7 bits (36),  Expect = 4.3
 Identities = 29/35 (83%), Gaps = 1/35 (3%)
 Strand=Plus/Plus

Query  32        TCACAAATGTTGT-GCATGCTTGGGATAATATTAG  65
                 ||| | ||||||| |||||||| | ||||| ||||
Sbjct  21576643  TCAGATATGTTGTTGCATGCTTTGAATAATTTTAG  21576677


 Score = 33.7 bits (36),  Expect = 4.3
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  96        TCTCCTCTTAGCATCTCT  113
                 ||||||||||||||||||
Sbjct  50752844  TCTCCTCTTAGCATCTCT  50752827



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 61487036775


  Database: JrSerr_genome.fa
    Posted date:  Apr 26, 2019  2:59 PM
  Number of letters in database: 534,671,929
  Number of sequences in database:  73



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2