BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=188 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 340 3e-92 lcl|Jr6D 37.4 0.48 lcl|Jr5S 37.4 0.48 lcl|Jr1S 37.4 0.48 lcl|Jr8S 35.6 1.7 lcl|Jr6S 35.6 1.7 lcl|Jr5D 35.6 1.7 lcl|Jr3D 35.6 1.7 lcl|Jr8D 33.7 5.9 lcl|Jr7D 33.7 5.9 lcl|Jr2S 33.7 5.9 lcl|Jr2D 33.7 5.9 lcl|Jr1D 33.7 5.9 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 340 bits (376), Expect = 3e-92 Identities = 188/188 (100%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1 TCACTATGCATGCCCAGGTCAATTTTTAATGTTGTCAAAGGTAAACCTGCCTGTGAAGTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18451236 TCACTATGCATGCCCAGGTCAATTTTTAATGTTGTCAAAGGTAAACCTGCCTGTGAAGTT 18451295 Query 61 ATTCCAACTTCGATCAGCAATAATATTTATCATAATATGCCGAGTTCACACTTCCAACAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18451296 ATTCCAACTTCGATCAGCAATAATATTTATCATAATATGCCGAGTTCACACTTCCAACAA 18451355 Query 121 TACGttaaatgttaggattatagtgaaaatgaaaattaacttataaattttaaattattt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18451356 TACGTTAAATGTTAGGATTATAGTGAAAATGAAAATTAACTTATAAATTTTAAATTATTT 18451415 Query 181 tattatta 188 |||||||| Sbjct 18451416 TATTATTA 18451423 Score = 37.4 bits (40), Expect = 0.48 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 75 CAGCAATAATATTTATCATAATATGCCGAGTTCAC 109 |||||||||||||||||| || | ||| | |||| Sbjct 23533135 CAGCAATAATATTTATCAGAAAACGCCTGGATCAC 23533169 Score = 33.7 bits (36), Expect = 5.9 Identities = 29/36 (81%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 64 CCAACTTCGATCAGCAATAATATTTATCATAATATG 99 ||||||| ||||| ||||||| | || ||||| || Sbjct 25842089 CCAACTTTAATCAGAAATAATAATAATAATAATCTG 25842124 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 37.4 bits (40), Expect = 0.48 Identities = 50/69 (72%), Gaps = 8/69 (12%) Strand=Plus/Plus Query 115 CAACAATACGttaaatgttagg-attatagtgaaaatgaaaattaacttataaattttaa 173 |||||||| |||||||| || ||||| || ||||||| |||||||| | | Sbjct 34174622 CAACAATATGTTAAATGAAGGGTATTATTGT-------AAAATTATCTTATAAAAATAAG 34174674 Query 174 attatttta 182 || |||||| Sbjct 34174675 ATGATTTTA 34174683 Score = 35.6 bits (38), Expect = 1.7 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 60 TATTCCAACTTCGATCAGCAATAA 83 |||||||||||| | ||||||||| Sbjct 32120712 TATTCCAACTTCCAACAGCAATAA 32120735 Score = 33.7 bits (36), Expect = 5.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 78 CAATAATATTTATCATAATAT 98 || |||||||||||||||||| Sbjct 30378894 CAGTAATATTTATCATAATAT 30378914 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 37.4 bits (40), Expect = 0.48 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 19 TCAATTTTTAATGTTGTCAAAGG 41 ||||| ||||||||||||||||| Sbjct 3694304 TCAATATTTAATGTTGTCAAAGG 3694326 Score = 35.6 bits (38), Expect = 1.7 Identities = 50/68 (74%), Gaps = 7/68 (10%) Strand=Plus/Plus Query 116 AACAATACGttaaatgttaggattatagtgaaaatgaaaattaacttataaattttaaat 175 ||||||| |||||||| || ||| || | || ||| || |||||||| | | || Sbjct 21542639 AACAATATGTTAAATGATA-GATAATTTT----AT--AAAATATTTTATAAATATAATAT 21542691 Query 176 tattttat 183 |||||||| Sbjct 21542692 TATTTTAT 21542699 Score = 33.7 bits (36), Expect = 5.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 20 CAATTTTTAATGTTGTCAAAGGT 42 |||||| ||||||||||||||| Sbjct 8753997 CAATTTAAAATGTTGTCAAAGGT 8754019 Score = 33.7 bits (36), Expect = 5.9 Identities = 49/69 (71%), Gaps = 8/69 (12%) Strand=Plus/Plus Query 115 CAACAATACGttaaatgttagg-attatagtgaaaatgaaaattaacttataaattttaa 173 |||||||| |||||||| || ||||| || ||||| | |||||||| | | Sbjct 9302645 CAACAATATGTTAAATGAGGGGTATTATTGT-------AAAATCATCTTATAAAAATAAG 9302697 Query 174 attatttta 182 || |||||| Sbjct 9302698 ATAATTTTA 9302706 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 37.4 bits (40), Expect = 0.48 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 113 TCCAACAATACGttaaatgttagga 137 |||||||||| || ||||||||||| Sbjct 3135025 TCCAACAATAAGTCAAATGTTAGGA 3135001 Score = 35.6 bits (38), Expect = 1.7 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 70 TCGATCAGCAATAATATTTATC 91 |||||||| ||||||||||||| Sbjct 26850867 TCGATCAGTAATAATATTTATC 26850888 Score = 33.7 bits (36), Expect = 5.9 Identities = 32/40 (80%), Gaps = 1/40 (3%) Strand=Plus/Minus Query 118 CAATACGttaaatgttaggattatagtgaaaatgaaaatt 157 |||||||||||| | | ||||||| || || ||||||| Sbjct 1876699 CAATACGTTAAAGATGATGATTATAACGATAA-GAAAATT 1876661 Score = 33.7 bits (36), Expect = 5.9 Identities = 35/44 (80%), Gaps = 3/44 (7%) Strand=Plus/Minus Query 54 TGAAGTTATTCCAACTTCGATC-AGCAATAATATTTATCATAAT 96 ||||||||| || |||| | | | ||||||||| |||| |||| Sbjct 16229473 TGAAGTTAT--CATCTTCTAACGAACAATAATATCTATCCTAAT 16229432 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 35.6 bits (38), Expect = 1.7 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 27 TAATGTTGTCAAAGGTAAACCTGCCTG 53 ||||||||||| || ||| |||||||| Sbjct 3953783 TAATGTTGTCAGAGATAAGCCTGCCTG 3953809 Score = 33.7 bits (36), Expect = 5.9 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 80 ATAATATTTATCATAATA 97 |||||||||||||||||| Sbjct 17406976 ATAATATTTATCATAATA 17406993 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 35.6 bits (38), Expect = 1.7 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 64 CCAACTTCGATCAGCAATAATATTTAT 90 ||| ||||||||| ||||||||| ||| Sbjct 17192596 CCATCTTCGATCATCAATAATATATAT 17192570 Score = 35.6 bits (38), Expect = 1.7 Identities = 27/32 (84%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 59 TTATTCCAACTTCGATCAGCAATAATATTTAT 90 |||||| |||||||||| |||| ||||||| Sbjct 24497679 TTATTCTAACTTCGATCGATAATATTATTTAT 24497710 Score = 33.7 bits (36), Expect = 5.9 Identities = 26/31 (84%), Gaps = 0/31 (0%) Strand=Plus/Minus Query 78 CAATAATATTTATCATAATATGCCGAGTTCA 108 ||||||||| ||| ||||||| || || ||| Sbjct 6905453 CAATAATATATATGATAATATTCCAAGCTCA 6905423 Score = 33.7 bits (36), Expect = 5.9 Identities = 26/31 (84%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 106 TCACACTTCCAACAATACGttaaatgttagg 136 ||||||||||| |||| ||||| |||||| Sbjct 17532988 TCACACTTCCACCAATTATTTAAAGGTTAGG 17533018 Score = 33.7 bits (36), Expect = 5.9 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 69 TTCGATCAGCAATAATATTTATCATAAT 96 ||| ||||||||| |||||| |||||| Sbjct 23383396 TTCCATCAGCAATCATATTTTGCATAAT 23383369 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 35.6 bits (38), Expect = 1.7 Identities = 33/42 (79%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 43 AAACCTGCCTGTGAAGTTATTCCAACTTCGATCAGCAATAAT 84 ||||||||| | | |||||||||| ||| | || ||| ||| Sbjct 19763509 AAACCTGCCCTTAATGTTATTCCAAGTTCCAACAACAAGAAT 19763550 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 35.6 bits (38), Expect = 1.7 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 75 CAGCAATAATATTTATCATAAT 96 |||||||| ||||||||||||| Sbjct 14722064 CAGCAATACTATTTATCATAAT 14722043 Score = 33.7 bits (36), Expect = 5.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 23 TTTTTAATGTTGTCAAAGGTA 43 ||||||||||||||||| ||| Sbjct 12032133 TTTTTAATGTTGTCAAAAGTA 12032153 Score = 33.7 bits (36), Expect = 5.9 Identities = 32/40 (80%), Gaps = 2/40 (5%) Strand=Plus/Minus Query 22 ATTTTTAATGTTGTCAAAGGTAA--ACCTGCCTGTGAAGT 59 ||||||| |||||||| ||| || |||| ||| || ||| Sbjct 16341638 ATTTTTAGTGTTGTCATAGGAAAGGACCTACCTTTGTAGT 16341599 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 33.7 bits (36), Expect = 5.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 79 AATAATATTTATCATAATATGCC 101 |||||||||||| ||||||| || Sbjct 9774069 AATAATATTTATGATAATATACC 9774047 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 33.7 bits (36), Expect = 5.9 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 42 TAAACCTGCCTGTGAAGTTATTCCAACT 69 ||||| | |||||||| || |||||||| Sbjct 15182417 TAAACATCCCTGTGAATTTCTTCCAACT 15182444 Score = 33.7 bits (36), Expect = 5.9 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 76 AGCAATAATATTTATCATAATAT 98 || |||||||||||| ||||||| Sbjct 25031335 AGAAATAATATTTATTATAATAT 25031357 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 33.7 bits (36), Expect = 5.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 72 GATCAGCAATAATATTTATCA 92 ||||| ||||||||||||||| Sbjct 22476910 GATCATCAATAATATTTATCA 22476890 Score = 33.7 bits (36), Expect = 5.9 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 22 ATTTTTAATGTTGTCAAAGGT 42 |||||| |||||||||||||| Sbjct 35817903 ATTTTTTATGTTGTCAAAGGT 35817923 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 33.7 bits (36), Expect = 5.9 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 51 CTGTGAAGTTATTCCAACTTCGATCAGC 78 |||| | ||| | ||||||||||||||| Sbjct 14910553 CTGTAAGGTTTTCCCAACTTCGATCAGC 14910526 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 33.7 bits (36), Expect = 5.9 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Minus Query 73 ATCAGCAATAATATTTATCATAATAT 98 || |||||| |||||| ||||||||| Sbjct 37021282 ATAAGCAATGATATTTTTCATAATAT 37021257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 85012500108 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2