BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=257 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 464 2e-129 lcl|Jr4S 48.2 4e-04 lcl|Jr8D 35.6 2.4 lcl|Jr7D 35.6 2.4 lcl|Jr6D 35.6 2.4 lcl|Jr5S 35.6 2.4 lcl|Jr2S 35.6 2.4 lcl|Jr1D 35.6 2.4 lcl|Jr8S 33.7 8.5 lcl|Jr7S 33.7 8.5 lcl|Jr6S 33.7 8.5 lcl|Jr5D 33.7 8.5 lcl|Jr3D 33.7 8.5 lcl|Jr2D 33.7 8.5 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 464 bits (514), Expect = 2e-129 Identities = 257/257 (100%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 1 GACTGCTTGAATATAAGTTTTCAACTTTTAGTGCTGTAGATGGAGGATTGAATTTTTCCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18452174 GACTGCTTGAATATAAGTTTTCAACTTTTAGTGCTGTAGATGGAGGATTGAATTTTTCCA 18452233 Query 61 ATCATGCAAAGGGATAGAGACCCTCTAGTTGTTGGACGTGTTATAGGTGATGTTTTGAAC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18452234 ATCATGCAAAGGGATAGAGACCCTCTAGTTGTTGGACGTGTTATAGGTGATGTTTTGAAC 18452293 Query 121 CCCTTTGAGAAGTCCATTGCTCTGAGGGTCACTTATAACAATAGAGAGGTTAACAATGGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18452294 CCCTTTGAGAAGTCCATTGCTCTGAGGGTCACTTATAACAATAGAGAGGTTAACAATGGC 18452353 Query 181 TGTGAGCTCAAGCCGTCTCTTGTTGTCAGCCCACCTAGGGTTGATGTAGGCGGTGATGAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18452354 TGTGAGCTCAAGCCGTCTCTTGTTGTCAGCCCACCTAGGGTTGATGTAGGCGGTGATGAC 18452413 Query 241 CTCAGGACTTTCTACAC 257 ||||||||||||||||| Sbjct 18452414 CTCAGGACTTTCTACAC 18452430 Score = 205 bits (226), Expect = 2e-51 Identities = 188/239 (79%), Gaps = 13/239 (5%) Strand=Plus/Plus Query 19 TTTCAACTTTTAGTGCTGTAGATGGAGGATTGAATTTTTCCAATCATGCAAAGGGATAGA 78 |||||||||||| | ||| | | || | || ||||| ||||||||| ||| || Sbjct 18588294 TTTCAACTTTTACTTCTGCATAGGGTTGCTT---TTTTTTCAATCATGCTCGAGGAGAGG 18588350 Query 79 GACCCTCTAGTTGTTGGACGTGTTATAGGTGATGTTTTGAACCCCTTTGAGAAGTCCATT 138 ||||| |||||||||||||| ||||||||| |||||||||||| |||| | Sbjct 18588351 GACCC----------GGACGTGTTATAGGAGATGTTTTGGACCCCTTTGAGAGCTCCACT 18588400 Query 139 GCTCTGAGGGTCACTTATAACAATAGAGAGGTTAACAATGGCTGTGAGCTCAAGCCGTCT 198 ||| ||||||| || || || |||||||| ||||| ||||| |||||| ||| | ||| Sbjct 18588401 GCTATGAGGGTTACCTACAATAATAGAGATGTTAATAATGGTTGTGAGTTCAGACTATCT 18588460 Query 199 CTTGTTGTCAGCCCACCTAGGGTTGATGTAGGCGGTGATGACCTCAGGACTTTCTACAC 257 | |||| ||||||||| |||||||||| |||||||||||||||||| |||||||||||| Sbjct 18588461 CATGTTATCAGCCCACGTAGGGTTGATATAGGCGGTGATGACCTCAAGACTTTCTACAC 18588519 Score = 176 bits (194), Expect = 1e-42 Identities = 186/243 (77%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 19 TTTCAACTTTTAGT--GCTGTAGATGGAGGATTGAATTTTTCCAAT--CATGCAAAGGGA 74 ||||||||||| | || || || | | |||||| ||| | | |||| ||||| Sbjct 18639348 TTTCAACTTTTTGCTAGCAGTGTATAGGGTTTTGAATACTTCAATTACCATGTCCAGGGA 18639407 Query 75 TAGAGACCCTCTAGTTGTTGGACGTGTTATAGGTGATGTTTTGAACCCCTTTGAGAAGTC 134 || ||||| |||| ||||| ||||||||||| |||||||| |||| ||| | ||| Sbjct 18639408 CAGGGACCCCCTAGCAGTTGGGCGTGTTATAGGAGATGTTTTAGACCCATTTACTAGGTC 18639467 Query 135 CATTGCTCTGAGGGTCACTTATAACAATAGAGAGGTTAACAATGGCTGTGAGCTCAAGCC 194 ||| |||| || |||||||||||||||| ||| |||| ||||| |||||| |||| || Sbjct 18639468 AATTACTCTCAGAATCACTTATAACAATAGCGAGATTAATAATGGATGTGAGTTCAAACC 18639527 Query 195 GTCTCTTGTTGTCAGCCCACCTAGGGTTGATGTAGGCGGTGATGACCTCAGGACTTTCTA 254 || | ||| ||| || ||||||||| || || ||||| ||||| |||||||||||||| Sbjct 18639528 CTCCCAGGTTCTCAACCAACCTAGGGTCGACGTTGGCGGGGATGATCTCAGGACTTTCTA 18639587 Query 255 CAC 257 ||| Sbjct 18639588 CAC 18639590 Score = 37.4 bits (40), Expect = 0.69 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 85 CTAGTTGTTGGACGTGTTATAGGTG 109 |||||||||||| |||| ||||||| Sbjct 33264090 CTAGTTGTTGGATGTGTCATAGGTG 33264066 Score = 35.6 bits (38), Expect = 2.4 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 115 TTGAACCCCTTTGAGAAGTCCATTGCT 141 |||||| | ||||| |||||||||||| Sbjct 24160454 TTGAACTCATTTGATAAGTCCATTGCT 24160428 Score = 33.7 bits (36), Expect = 8.5 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 8 TGAATATAAGTTTTCAACTTTTA 30 |||||| || ||||||||||||| Sbjct 3144179 TGAATAGAAATTTTCAACTTTTA 3144157 Score = 33.7 bits (36), Expect = 8.5 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 6 CTTGAATATAAGTTTTCAACTTT 28 ||||||| ||||||||||| ||| Sbjct 30073174 CTTGAATTTAAGTTTTCAAGTTT 30073196 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 48.2 bits (52), Expect = 4e-04 Identities = 46/57 (81%), Gaps = 4/57 (7%) Strand=Plus/Plus Query 43 GAGGATTGAATTTTTCCAATCATGCAAAGGGA--TAGA--GACCCTCTAGTTGTTGG 95 |||||||||||||||||||| |||| | ||| || | ||||||| || |||||| Sbjct 15841709 GAGGATTGAATTTTTCCAATTATGCCCAAGGACGTACAAGGACCCTCCAGCTGTTGG 15841765 Score = 44.6 bits (48), Expect = 0.005 Identities = 36/44 (82%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 43 GAGGATTGAATTTTTCCAATCATGCAAAGGGATAGAGACCCTCT 86 |||||||| || ||||||||||||| ||||| | |||| ||| Sbjct 15841663 GAGGATTGCATGTTTCCAATCATGCCCAGGGACATGGACCTTCT 15841620 Score = 39.2 bits (42), Expect = 0.20 Identities = 23/24 (96%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 44 AGGATTGAATTTTTCCAATCATGC 67 ||||||||||||||| |||||||| Sbjct 15832099 AGGATTGAATTTTTCTAATCATGC 15832122 Score = 33.7 bits (36), Expect = 8.5 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 12 TATAAGTTTTCAACTTTTAGTGCTGTAG 39 ||| |||||| ||||||||||| | ||| Sbjct 7123411 TATTAGTTTTAAACTTTTAGTGATTTAG 7123438 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 35.6 bits (38), Expect = 2.4 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 156 TAACAATAGAGAGGTTAACAAT 177 ||||||||||||||||| |||| Sbjct 19919713 TAACAATAGAGAGGTTACCAAT 19919692 Score = 33.7 bits (36), Expect = 8.5 Identities = 23/25 (92%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 114 TTTGAACCCCTTTGAGAAGTCCATT 138 ||||| ||||||||||||| ||||| Sbjct 3963805 TTTGATCCCCTTTGAGAAG-CCATT 3963782 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 35.6 bits (38), Expect = 2.4 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 43 GAGGATTGAATTTTTCCAA 61 ||||||||||||||||||| Sbjct 14304132 GAGGATTGAATTTTTCCAA 14304150 Score = 33.7 bits (36), Expect = 8.5 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 9 GAATATAAGTTTTCAACTTTTAG 31 |||||||||||| ||||||| || Sbjct 12473063 GAATATAAGTTTGCAACTTTCAG 12473085 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 35.6 bits (38), Expect = 2.4 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 15 AAGTTTTCAACTTTTAGTG 33 ||||||||||||||||||| Sbjct 24309492 AAGTTTTCAACTTTTAGTG 24309474 Score = 33.7 bits (36), Expect = 8.5 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 123 CTTTGAGAAGTCCATTGCTCTGA 145 ||| |||||||||||||||| || Sbjct 2426076 CTTCGAGAAGTCCATTGCTCAGA 2426098 Score = 33.7 bits (36), Expect = 8.5 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 35 TGTAGATGGAGGATTGAATTT 55 || |||||||||||||||||| Sbjct 14182507 TGGAGATGGAGGATTGAATTT 14182487 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 35.6 bits (38), Expect = 2.4 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 231 CGGTGATGACCTCAGGACTTTC 252 |||||||||||||||||| ||| Sbjct 20524537 CGGTGATGACCTCAGGACATTC 20524558 Score = 33.7 bits (36), Expect = 8.5 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 69 AAGGGATAGAGACCCTCT 86 |||||||||||||||||| Sbjct 15905798 AAGGGATAGAGACCCTCT 15905815 Score = 33.7 bits (36), Expect = 8.5 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 4 TGCTTGAATATAAGTTTTCAA 24 |||||||||||||||||| || Sbjct 19573288 TGCTTGAATATAAGTTTTTAA 19573308 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 35.6 bits (38), Expect = 2.4 Identities = 30/36 (83%), Gaps = 1/36 (3%) Strand=Plus/Minus Query 92 TTGGACGTGTTATAGGT-GATGTTTTGAACCCCTTT 126 ||| || ||||||| | |||||||||||||| ||| Sbjct 15906189 TTGTACATGTTATATGAAGATGTTTTGAACCCGTTT 15906154 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 35.6 bits (38), Expect = 2.4 Identities = 31/39 (79%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 19 TTTCAACTTTTAGTGCTGTAGATGGAGGATTGAATTTTT 57 ||| || ||| ||| ||||| || | | ||||||||||| Sbjct 50597933 TTTTAATTTTGAGTCCTGTAAATAGTGAATTGAATTTTT 50597971 Score = 33.7 bits (36), Expect = 8.5 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 14 TAAGTTTTCAACTTTTAGTGCTG 36 |||||||| ||||||||||||| Sbjct 17746471 TAAGTTTTACACTTTTAGTGCTG 17746493 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 33.7 bits (36), Expect = 8.5 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 12 TATAAGTTTTCAACTTTT 29 |||||||||||||||||| Sbjct 6365421 TATAAGTTTTCAACTTTT 6365438 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 33.7 bits (36), Expect = 8.5 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 35 TGTAGATGGAGGATTGAATTTTT 57 || ||||||||||| |||||||| Sbjct 18819848 TGGAGATGGAGGATGGAATTTTT 18819826 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 33.7 bits (36), Expect = 8.5 Identities = 29/35 (83%), Gaps = 1/35 (3%) Strand=Plus/Minus Query 47 ATTGAATTTTTCCAATCATGCAAAGGGATA-GAGA 80 ||||||||||| |||||| |||| | ||| |||| Sbjct 24297913 ATTGAATTTTTAAAATCATTCAAAAGTATACGAGA 24297879 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 33.7 bits (36), Expect = 8.5 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 7 TTGAATATAAGTTTTCAACTTTTAGT 32 ||| ||||||||||| ||||| |||| Sbjct 6403110 TTGGATATAAGTTTTAAACTTATAGT 6403135 Score = 33.7 bits (36), Expect = 8.5 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 33 GCTGTAGATGGAGGATTG 50 |||||||||||||||||| Sbjct 22334415 GCTGTAGATGGAGGATTG 22334398 Score = 33.7 bits (36), Expect = 8.5 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 93 TGGACGTGTTATAGGTGATGTTTTGAAC 120 ||||| ||||| | || ||||||||||| Sbjct 33616647 TGGACATGTTAGAAGTAATGTTTTGAAC 33616620 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 33.7 bits (36), Expect = 8.5 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 51 AATTTTTCCAATCATGCAAAGGGATAGA 78 ||||||||||||||| ||| | ||||| Sbjct 7688737 AATTTTTCCAATCATTAAAAAGCATAGA 7688710 Score = 33.7 bits (36), Expect = 8.5 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 149 TCACTTATAACAATAGAGAGGTTAACAA 176 ||||||||||||||| | || |||| || Sbjct 8878315 TCACTTATAACAATAAATAGATTAAGAA 8878288 Score = 33.7 bits (36), Expect = 8.5 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 52 ATTTTTCCAATCATGCAAAGG 72 |||||| |||||||||||||| Sbjct 9571732 ATTTTTACAATCATGCAAAGG 9571752 Score = 33.7 bits (36), Expect = 8.5 Identities = 26/30 (87%), Gaps = 1/30 (3%) Strand=Plus/Plus Query 7 TTGAATA-TAAGTTTTCAACTTTTAGTGCT 35 ||| ||| |||| ||||||||||| ||||| Sbjct 23791745 TTGTATACTAAGCTTTCAACTTTTGGTGCT 23791774 Score = 33.7 bits (36), Expect = 8.5 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 39 GATGGAGGATTGAATTTT 56 |||||||||||||||||| Sbjct 33950787 GATGGAGGATTGAATTTT 33950770 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 33.7 bits (36), Expect = 8.5 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 52 ATTTTTCCAATCATGCAA 69 |||||||||||||||||| Sbjct 4710305 ATTTTTCCAATCATGCAA 4710288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121904717136 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2