BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: JrSerr_genome.fa
           73 sequences; 534,671,929 total letters



Query= 
Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

lcl|Jr4D                                                               246    4e-64
lcl|Jr6D                                                              39.2    0.094
lcl|Jr8D                                                              37.4    0.33 
lcl|Jr1D                                                              37.4    0.33 


>Query1 on lcl|Jr4D| Query1 on lcl|Jr4D 
Length=35878018

 Score =  246 bits (272),  Expect = 4e-64
 Identities = 136/136 (100%), Gaps = 0/136 (0%)
 Strand=Plus/Plus

Query  1         ACCGATGGGATGGGCTGCTCAGATATATTCTGAGTCGAGTGCTAGGATTGAGACGTGATG  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18450793  ACCGATGGGATGGGCTGCTCAGATATATTCTGAGTCGAGTGCTAGGATTGAGACGTGATG  18450852

Query  61        ATCGCTTGCGTCCTACCTTTGTTTTTATTCTAATTTAGGATGTTCGTGGTGTCATATGTA  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18450853  ATCGCTTGCGTCCTACCTTTGTTTTTATTCTAATTTAGGATGTTCGTGGTGTCATATGTA  18450912

Query  121       GACACGTTTTACTAAC  136
                 ||||||||||||||||
Sbjct  18450913  GACACGTTTTACTAAC  18450928


>Query1 on lcl|Jr6D| Query1 on lcl|Jr6D 
Length=37991167

 Score = 39.2 bits (42),  Expect = 0.094
 Identities = 33/41 (80%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  56        TGATGATCGCTTGCGTCCTACCTTTGTTTTTATTCTAATTT  96
                 ||| ||| |||| | |||| ||| | |||||||| ||||||
Sbjct  34946162  TGAGGATAGCTTTCTTCCTTCCTCTTTTTTTATTTTAATTT  34946202


>Query1 on lcl|Jr8D| Query1 on lcl|Jr8D 
Length=35197335

 Score = 37.4 bits (40),  Expect = 0.33
 Identities = 33/39 (85%), Gaps = 2/39 (5%)
 Strand=Plus/Plus

Query  79        TTGTTTTTATTCTAATTTAGGATGTTCGTG-GTGTCATA  116
                 ||| ||||||||| ||||||||| | |||| ||| ||||
Sbjct  28209607  TTGGTTTTATTCTCATTTAGGAT-TACGTGTGTGCCATA  28209644


>Query1 on lcl|Jr1D| Query1 on lcl|Jr1D 
Length=51893103

 Score = 37.4 bits (40),  Expect = 0.33
 Identities = 23/25 (92%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  74        TACCTTTGTTTTTATTCTAATTTAG  98
                 ||||||| ||||||| |||||||||
Sbjct  19887339  TACCTTTTTTTTTATGCTAATTTAG  19887363



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 57744347580


  Database: JrSerr_genome.fa
    Posted date:  Apr 26, 2019  2:59 PM
  Number of letters in database: 534,671,929
  Number of sequences in database:  73



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2