BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=136 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 246 4e-64 lcl|Jr6D 39.2 0.094 lcl|Jr8D 37.4 0.33 lcl|Jr1D 37.4 0.33 lcl|Jr8S 35.6 1.1 lcl|Jr5S 35.6 1.1 lcl|Jr5D 35.6 1.1 lcl|Jr2S 35.6 1.1 lcl|Jr4S 33.7 4.0 lcl|Jr3S 33.7 4.0 lcl|Jr2D 33.7 4.0 lcl|Jr1S 33.7 4.0 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 246 bits (272), Expect = 4e-64 Identities = 136/136 (100%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1 ACCGATGGGATGGGCTGCTCAGATATATTCTGAGTCGAGTGCTAGGATTGAGACGTGATG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18450793 ACCGATGGGATGGGCTGCTCAGATATATTCTGAGTCGAGTGCTAGGATTGAGACGTGATG 18450852 Query 61 ATCGCTTGCGTCCTACCTTTGTTTTTATTCTAATTTAGGATGTTCGTGGTGTCATATGTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18450853 ATCGCTTGCGTCCTACCTTTGTTTTTATTCTAATTTAGGATGTTCGTGGTGTCATATGTA 18450912 Query 121 GACACGTTTTACTAAC 136 |||||||||||||||| Sbjct 18450913 GACACGTTTTACTAAC 18450928 Score = 33.7 bits (36), Expect = 4.0 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 77 CTTTGTTTTTATTCTAATTTAGGATGTT 104 ||||||||||||||| ||| | ||||| Sbjct 21076586 CTTTGTTTTTATTCTGCTTTTGTATGTT 21076613 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 39.2 bits (42), Expect = 0.094 Identities = 33/41 (80%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 56 TGATGATCGCTTGCGTCCTACCTTTGTTTTTATTCTAATTT 96 ||| ||| |||| | |||| ||| | |||||||| |||||| Sbjct 34946162 TGAGGATAGCTTTCTTCCTTCCTCTTTTTTTATTTTAATTT 34946202 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 37.4 bits (40), Expect = 0.33 Identities = 33/39 (85%), Gaps = 2/39 (5%) Strand=Plus/Plus Query 79 TTGTTTTTATTCTAATTTAGGATGTTCGTG-GTGTCATA 116 ||| ||||||||| ||||||||| | |||| ||| |||| Sbjct 28209607 TTGGTTTTATTCTCATTTAGGAT-TACGTGTGTGCCATA 28209644 Score = 35.6 bits (38), Expect = 1.1 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 73 CTACCTTTGTTTTTATTCTAATTT 96 |||||||| ||||||| ||||||| Sbjct 2310328 CTACCTTTTTTTTTATACTAATTT 2310305 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 76 CCTTTGTTTTTATTCTAATTT 96 || |||||||||||||||||| Sbjct 1763559 CCATTGTTTTTATTCTAATTT 1763539 Score = 33.7 bits (36), Expect = 4.0 Identities = 23/25 (92%), Gaps = 1/25 (4%) Strand=Plus/Minus Query 74 TACCTTTGTTTTTATTCTA-ATTTA 97 || |||||||||||||||| ||||| Sbjct 4885261 TATCTTTGTTTTTATTCTATATTTA 4885237 Score = 33.7 bits (36), Expect = 4.0 Identities = 22/23 (96%), Gaps = 1/23 (4%) Strand=Plus/Plus Query 74 TACCTTTGTTTTTATTCTAATTT 96 |||||||||||||||| |||||| Sbjct 16425667 TACCTTTGTTTTTATT-TAATTT 16425688 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 37.4 bits (40), Expect = 0.33 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 74 TACCTTTGTTTTTATTCTAATTTAG 98 ||||||| ||||||| ||||||||| Sbjct 19887339 TACCTTTTTTTTTATGCTAATTTAG 19887363 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 77 CTTTGTTTTTATTCTAATTTA 97 ||||||||||||| ||||||| Sbjct 42680874 CTTTGTTTTTATTGTAATTTA 42680894 Score = 33.7 bits (36), Expect = 4.0 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 80 TGTTTTTATTCTAATTTAGGATGTTC 105 |||| |||||| ||||||||||||| Sbjct 51249069 TGTTATTATTCGTATTTAGGATGTTC 51249094 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 35.6 bits (38), Expect = 1.1 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 78 TTTGTTTTTATTCTAATTTAGGAT 101 ||||||||||||||| ||||| || Sbjct 2913102 TTTGTTTTTATTCTATTTTAGCAT 2913125 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 81 GTTTTTATTCTAATTTAGGAT 101 |||||||||||||||||| || Sbjct 14001844 GTTTTTATTCTAATTTAGAAT 14001864 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 35.6 bits (38), Expect = 1.1 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 76 CCTTTGTTTTTATTCTAAT 94 ||||||||||||||||||| Sbjct 5769398 CCTTTGTTTTTATTCTAAT 5769416 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 79 TTGTTTTTATTCTAATTT 96 |||||||||||||||||| Sbjct 7123583 TTGTTTTTATTCTAATTT 7123566 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 35.6 bits (38), Expect = 1.1 Identities = 31/39 (79%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 88 TTCTAATTTAGGATGTTCGTGGTGTCATATGTAGACACG 126 || || || | ||||||| ||||||||||| | ||||| Sbjct 20602361 TTTTACTTCATGATGTTCATGGTGTCATATTCATACACG 20602323 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 78 TTTGTTTTTATTCTAATT 95 |||||||||||||||||| Sbjct 26044298 TTTGTTTTTATTCTAATT 26044281 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 35.6 bits (38), Expect = 1.1 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Plus Query 84 TTTATTCTAATTTAGGATG 102 ||||||||||||||||||| Sbjct 1022409 TTTATTCTAATTTAGGATG 1022427 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 78 TTTGTTTTTATTCTAATT 95 |||||||||||||||||| Sbjct 28610149 TTTGTTTTTATTCTAATT 28610132 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 78 TTTGTTTTTATTCTAATT 95 |||||||||||||||||| Sbjct 28732660 TTTGTTTTTATTCTAATT 28732643 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 78 TTTGTTTTTATTCTAATT 95 |||||||||||||||||| Sbjct 29043240 TTTGTTTTTATTCTAATT 29043223 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 78 TTTGTTTTTATTCTAATT 95 |||||||||||||||||| Sbjct 29113789 TTTGTTTTTATTCTAATT 29113772 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 33.7 bits (36), Expect = 4.0 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Minus Query 83 TTTTATTCTAATTTAGGATGTTCGTGGT 110 ||||||| || | |||||| |||||||| Sbjct 3979166 TTTTATTATATTATAGGATCTTCGTGGT 3979139 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 81 GTTTTTATTCTAATTTAGGATGT 103 ||||||||| ||| ||||||||| Sbjct 9851144 GTTTTTATTTTAAGTTAGGATGT 9851166 Score = 33.7 bits (36), Expect = 4.0 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 77 CTTTGTTTTTATTCTAATTTA 97 ||||||||||||| ||||||| Sbjct 18042074 CTTTGTTTTTATTGTAATTTA 18042054 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 33.7 bits (36), Expect = 4.0 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 78 TTTGTTTTTATTCTAATT 95 |||||||||||||||||| Sbjct 19821027 TTTGTTTTTATTCTAATT 19821044 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 33.7 bits (36), Expect = 4.0 Identities = 35/45 (78%), Gaps = 2/45 (4%) Strand=Plus/Plus Query 80 TGTTTTTATTCTAATTTAGGATGTTCGTGGTGTCATATGTAGACA 124 |||||| ||| | ||| |||| || || |||||| |||||||| Sbjct 13308384 TGTTTTGATTTT--TTTTGGATATTATTGTTGTCATCTGTAGACA 13308426 Score = 33.7 bits (36), Expect = 4.0 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 77 CTTTGTTTTTATTCTAATTTAGG 99 || ||||||||||||| |||||| Sbjct 32661072 CTCTGTTTTTATTCTATTTTAGG 32661050 Score = 33.7 bits (36), Expect = 4.0 Identities = 23/26 (88%), Gaps = 0/26 (0%) Strand=Plus/Plus Query 71 TCCTACCTTTGTTTTTATTCTAATTT 96 ||||| |||||||||||||| || || Sbjct 42274793 TCCTATCTTTGTTTTTATTCAAAATT 42274818 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 33.7 bits (36), Expect = 4.0 Identities = 24/28 (86%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 77 CTTTGTTTTTATTCTAATTTAGGATGTT 104 ||||||||||||||| ||| | ||||| Sbjct 18040820 CTTTGTTTTTATTCTGCTTTTGTATGTT 18040847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 57744347580 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2