BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=21 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr4D 39.2 0.003 lcl|Jr6S 33.7 0.11 lcl|Jr5D 31.9 0.39 lcl|Jr8D 30.1 1.4 lcl|Jr7S 30.1 1.4 lcl|Jr6D 30.1 1.4 lcl|Jr5S 30.1 1.4 lcl|Jr3S 30.1 1.4 lcl|Jr2S 30.1 1.4 lcl|Jr8S 28.3 4.7 lcl|Jr7D 28.3 4.7 lcl|Jr4S 28.3 4.7 lcl|Jr3D 28.3 4.7 lcl|Jr2D 28.3 4.7 lcl|Jr1S 28.3 4.7 lcl|Jr1D 28.3 4.7 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 39.2 bits (42), Expect = 0.003 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATCT 21 ||||||||||||||||||||| Sbjct 18451861 TTTTTAAAAAGCTAAAGATCT 18451881 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 2 TTTTAAAAAGCTAAAGATCT 21 |||||||||| ||| ||||| Sbjct 24694231 TTTTAAAAAGGTAATGATCT 24694250 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 33.7 bits (36), Expect = 0.11 Identities = 20/21 (95%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATCT 21 ||||||||||||| ||||||| Sbjct 24586560 TTTTTAAAAAGCTTAAGATCT 24586540 Score = 30.1 bits (32), Expect = 1.4 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATCT 21 ||||||| || |||||||||| Sbjct 12733325 TTTTTAATAATCTAAAGATCT 12733305 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 2 TTTTAAAAAGCTAAA 16 ||||||||||||||| Sbjct 9657195 TTTTAAAAAGCTAAA 9657181 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 2 TTTTAAAAAGCTAAA 16 ||||||||||||||| Sbjct 10081605 TTTTAAAAAGCTAAA 10081591 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2 TTTTAAAAAGCTAAAGATCT 21 ||||| ||| |||||||||| Sbjct 12734462 TTTTACAAATCTAAAGATCT 12734443 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 31.9 bits (34), Expect = 0.39 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATC 20 |||||||||||| ||||||| Sbjct 8898782 TTTTTAAAAAGCCAAAGATC 8898801 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 2 TTTTAAAAAGCTAAA 16 ||||||||||||||| Sbjct 11289496 TTTTAAAAAGCTAAA 11289482 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAA 15 ||||||||||||||| Sbjct 11455501 TTTTTAAAAAGCTAA 11455515 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 2 TTTTAAAAAGCTAAA 16 ||||||||||||||| Sbjct 14029855 TTTTAAAAAGCTAAA 14029869 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||||||||| |||||| Sbjct 15993276 TTTTTAAAAAGTTAAAGA 15993259 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 30.1 bits (32), Expect = 1.4 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAA 16 |||||||||||||||| Sbjct 19136574 TTTTTAAAAAGCTAAA 19136559 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 2 TTTTAAAAAGCTAAAGAT 19 ||||||||| |||||||| Sbjct 28360426 TTTTAAAAATCTAAAGAT 28360409 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATC 20 |||||||||||||| |||| Sbjct 32252785 TTTTTAAAAAGCTATTGATC 32252804 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 5 TAAAAAGCTAAAGAT 19 ||||||||||||||| Sbjct 34739105 TAAAAAGCTAAAGAT 34739119 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 30.1 bits (32), Expect = 1.4 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATCT 21 ||||||||| |||||||||| Sbjct 17819213 TTTTTAAAAGTCTAAAGATCT 17819233 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||||||||| |||||| Sbjct 930813 TTTTTAAAAAGTTAAAGA 930830 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||||||||| |||||| Sbjct 7706608 TTTTTAAAAAGATAAAGA 7706591 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGA 18 |||||||||||| ||||| Sbjct 8256245 TTTTTAAAAAGCAAAAGA 8256262 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATC 20 |||||||||| ||||| ||| Sbjct 9267771 TTTTTAAAAAACTAAAAATC 9267790 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAA 15 ||||||||||||||| Sbjct 14815296 TTTTTAAAAAGCTAA 14815310 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 30.1 bits (32), Expect = 1.4 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATCT 21 |||| |||||| ||||||||| Sbjct 10499631 TTTTAAAAAAGATAAAGATCT 10499651 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAA 15 ||||||||||||||| Sbjct 12313907 TTTTTAAAAAGCTAA 12313893 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATC 20 ||||| |||||||||| ||| Sbjct 19255085 TTTTTCAAAAGCTAAAAATC 19255066 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGA 18 ||| |||||||||||||| Sbjct 21198775 TTTCTAAAAAGCTAAAGA 21198792 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||||||||| |||||| Sbjct 25446265 TTTTTAAAAAGATAAAGA 25446248 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2 TTTTAAAAAGCTAAAGATCT 21 |||||||||||| || |||| Sbjct 34175059 TTTTAAAAAGCTTAAAATCT 34175040 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 30.1 bits (32), Expect = 1.4 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 3 TTTAAAAAGCTAAAGA 18 |||||||||||||||| Sbjct 14198160 TTTAAAAAGCTAAAGA 14198145 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAA 15 ||||||||||||||| Sbjct 12592265 TTTTTAAAAAGCTAA 12592251 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 2 TTTTAAAAAGCTAAA 16 ||||||||||||||| Sbjct 16053855 TTTTAAAAAGCTAAA 16053869 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 30.1 bits (32), Expect = 1.4 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATCT 21 ||||| |||||||||| |||| Sbjct 9026369 TTTTTGAAAAGCTAAAAATCT 9026349 Score = 30.1 bits (32), Expect = 1.4 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 4 TTAAAAAGCTAAAGAT 19 |||||||||||||||| Sbjct 25346477 TTAAAAAGCTAAAGAT 25346492 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 4 TTAAAAAGCTAAAGATCT 21 ||||||||||||| |||| Sbjct 9915908 TTAAAAAGCTAAATATCT 9915925 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAA 15 ||||||||||||||| Sbjct 26356355 TTTTTAAAAAGCTAA 26356341 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 30.1 bits (32), Expect = 1.4 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 6 AAAAAGCTAAAGATCT 21 |||||||||||||||| Sbjct 4436247 AAAAAGCTAAAGATCT 4436232 Score = 30.1 bits (32), Expect = 1.4 Identities = 19/21 (90%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATCT 21 ||||||||| | ||||||||| Sbjct 31360986 TTTTTAAAATGATAAAGATCT 31360966 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||||||||| |||||| Sbjct 7083452 TTTTTAAAAAGATAAAGA 7083435 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 6 AAAAAGCTAAAGATC 20 ||||||||||||||| Sbjct 5150636 AAAAAGCTAAAGATC 5150650 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 5 TAAAAAGCTAAAGAT 19 ||||||||||||||| Sbjct 17828094 TAAAAAGCTAAAGAT 17828080 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 3 TTTAAAAAGCTAAAG 17 ||||||||||||||| Sbjct 5113521 TTTAAAAAGCTAAAG 5113507 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 2 TTTTAAAAAGCTAAAGATCT 21 |||||||||| |||||||| Sbjct 11418891 TTTTAAAAAGAGAAAGATCT 11418910 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATC 20 ||||||||||| |||| ||| Sbjct 19153771 TTTTTAAAAAGTTAAAAATC 19153790 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATC 20 ||| | |||||||||||||| Sbjct 27099354 TTTCTGAAAAGCTAAAGATC 27099335 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGA 18 |||||||||||| ||||| Sbjct 3169134 TTTTTAAAAAGCAAAAGA 3169117 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 6 AAAAAGCTAAAGATC 20 ||||||||||||||| Sbjct 10145302 AAAAAGCTAAAGATC 10145316 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 2 TTTTAAAAAGCTAAAGAT 19 ||| |||||||||||||| Sbjct 30891038 TTTGAAAAAGCTAAAGAT 30891055 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||||||||| |||||| Sbjct 32628004 TTTTTAAAAAGTTAAAGA 32627987 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 28.3 bits (30), Expect = 4.7 Identities = 19/20 (95%), Gaps = 1/20 (5%) Strand=Plus/Minus Query 2 TTTTAAAAAGCTAAA-GATC 20 ||||||||||||||| |||| Sbjct 3255978 TTTTAAAAAGCTAAATGATC 3255959 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATC 20 |||||||||| |||||||| Sbjct 11126246 TTTTTAAAAAAATAAAGATC 11126227 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 3 TTTAAAAAGCTAAAGATC 20 |||||||||| ||||||| Sbjct 34557416 TTTAAAAAGCAAAAGATC 34557433 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATC 20 ||||| |||| ||||||||| Sbjct 4388005 TTTTTTAAAATCTAAAGATC 4388024 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||||||||||| |||| Sbjct 12122201 TTTTTAAAAAGCTCAAGA 12122218 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGATC 20 |||||||||||| || |||| Sbjct 88569 TTTTTAAAAAGCAAATGATC 88588 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 4 TTAAAAAGCTAAAGA 18 ||||||||||||||| Sbjct 7414787 TTAAAAAGCTAAAGA 7414773 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 6 AAAAAGCTAAAGATC 20 ||||||||||||||| Sbjct 9850651 AAAAAGCTAAAGATC 9850637 Score = 28.3 bits (30), Expect = 4.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAA 15 ||||||||||||||| Sbjct 22379079 TTTTTAAAAAGCTAA 22379093 Score = 28.3 bits (30), Expect = 4.7 Identities = 18/20 (90%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1 TTTTTAAAAAGCTAAAGATC 20 |||||||||| |||||||| Sbjct 23862598 TTTTTAAAAAAATAAAGATC 23862579 Score = 28.3 bits (30), Expect = 4.7 Identities = 17/18 (94%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 1 TTTTTAAAAAGCTAAAGA 18 ||||| |||||||||||| Sbjct 32103013 TTTTTGAAAAGCTAAAGA 32103030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1604011845 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2