BLAST Search Results

BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: JrSerr_genome.fa
           73 sequences; 534,671,929 total letters



Query= 
Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

lcl|Jr8S                                                              33.7    0.11 
lcl|Jr2D                                                              31.9    0.39 
lcl|Jr5S                                                              30.1    1.4  
lcl|Jr3D                                                              30.1    1.4  
lcl|Jr8D                                                              28.3    4.7  
lcl|Jr7S                                                              28.3    4.7  
lcl|Jr6S                                                              28.3    4.7  
lcl|Jr4D                                                              28.3    4.7  
lcl|Jr3S                                                              28.3    4.7  
lcl|Jr2S                                                              28.3    4.7  
lcl|Jr1S                                                              28.3    4.7  


>Query1 on lcl|Jr8S| Query1 on lcl|Jr8S 
Length=19617005

 Score = 33.7 bits (36),  Expect = 0.11
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3         TGTTTTGTGGGTGGTGGT  20
                 ||||||||||||||||||
Sbjct  19041640  TGTTTTGTGGGTGGTGGT  19041623


 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  3         TGTTTTGTGGGTGGTGGT  20
                 ||||| ||||||||||||
Sbjct  19497008  TGTTTGGTGGGTGGTGGT  19496991


>Query1 on lcl|Jr2D| Query1 on lcl|Jr2D 
Length=43955564

 Score = 31.9 bits (34),  Expect = 0.39
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  1         ATTGTTTTGTGGGTGGTGGT  20
                 ||||||||||||| ||||||
Sbjct  36719593  ATTGTTTTGTGGGAGGTGGT  36719574


 Score = 30.1 bits (32),  Expect = 1.4
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  2        TTGTTTTGTGGGTGGTGGT  20
                || ||||||||||||||||
Sbjct  6882776  TTTTTTTGTGGGTGGTGGT  6882758


>Query1 on lcl|Jr5S| Query1 on lcl|Jr5S 
Length=32184663

 Score = 30.1 bits (32),  Expect = 1.4
 Identities = 18/19 (95%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  1        ATTGTTTTGTGGGTGGTGG  19
                ||||||||||||| |||||
Sbjct  2785976  ATTGTTTTGTGGGGGGTGG  2785958


>Query1 on lcl|Jr3D| Query1 on lcl|Jr3D 
Length=38540051

 Score = 30.1 bits (32),  Expect = 1.4
 Identities = 16/16 (100%), Gaps = 0/16 (0%)
 Strand=Plus/Minus

Query  5         TTTTGTGGGTGGTGGT  20
                 ||||||||||||||||
Sbjct  30877271  TTTTGTGGGTGGTGGT  30877256


>Query1 on lcl|Jr8D| Query1 on lcl|Jr8D 
Length=35197335

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  6         TTTGTGGGTGGTGGT  20
                 |||||||||||||||
Sbjct  11888933  TTTGTGGGTGGTGGT  11888947


>Query1 on lcl|Jr7S| Query1 on lcl|Jr7S 
Length=22705590

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  2        TTGTTTTGTGGGTGG  16
                |||||||||||||||
Sbjct  1060223  TTGTTTTGTGGGTGG  1060209


>Query1 on lcl|Jr6S| Query1 on lcl|Jr6S 
Length=24894769

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  3        TGTTTTGTGGGTGGT  17
                |||||||||||||||
Sbjct  6132659  TGTTTTGTGGGTGGT  6132645


 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  2        TTGTTTTGTGGGTGGTGG  19
                |||| |||||||||||||
Sbjct  8393389  TTGTCTTGTGGGTGGTGG  8393372


>Query1 on lcl|Jr4D| Query1 on lcl|Jr4D 
Length=35878018

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3        TGTTTTGTGGGTGGTGGT  20
                ||| ||||||||||||||
Sbjct  8233400  TGTGTTGTGGGTGGTGGT  8233417


 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 17/18 (94%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3        TGTTTTGTGGGTGGTGGT  20
                ||| ||||||||||||||
Sbjct  8244022  TGTGTTGTGGGTGGTGGT  8244039


>Query1 on lcl|Jr3S| Query1 on lcl|Jr3S 
Length=28458890

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  3         TGTTTTGTGGGTGGT  17
                 |||||||||||||||
Sbjct  16724595  TGTTTTGTGGGTGGT  16724609


>Query1 on lcl|Jr2S| Query1 on lcl|Jr2S 
Length=37319718

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  6         TTTGTGGGTGGTGGT  20
                 |||||||||||||||
Sbjct  22393567  TTTGTGGGTGGTGGT  22393553


>Query1 on lcl|Jr1S| Query1 on lcl|Jr1S 
Length=29818788

 Score = 28.3 bits (30),  Expect = 4.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  1         ATTGTTTTGTGGGTG  15
                 |||||||||||||||
Sbjct  23592336  ATTGTTTTGTGGGTG  23592322



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 1604012064


  Database: JrSerr_genome.fa
    Posted date:  Apr 26, 2019  2:59 PM
  Number of letters in database: 534,671,929
  Number of sequences in database:  73



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2