BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: JrSerr_genome.fa 73 sequences; 534,671,929 total letters Query= Length=1405 Score E Sequences producing significant alignments: (Bits) Value lcl|Jr3D 1792 0.0 lcl|Jr3S 120 4e-25 lcl|Jr1S 93.3 6e-17 lcl|Jr6S 89.7 8e-16 lcl|Jr1D 78.8 1e-12 lcl|Jr8D 77.0 5e-12 lcl|Jr2D 75.2 2e-11 lcl|Jr5D 71.6 2e-10 lcl|Jr6D 60.8 4e-07 lcl|Jr2S 59.0 1e-06 lcl|Jr8S 57.2 4e-06 lcl|Jr7S 57.2 4e-06 lcl|Jr4D 57.2 4e-06 lcl|Jr5S 55.4 2e-05 lcl|Jr7D 44.6 0.028 lcl|Jr4S 37.4 4.2 >Query1 on lcl|Jr3D| Query1 on lcl|Jr3D Length=38540051 Score = 1792 bits (1986), Expect = 0.0 Identities = 995/996 (99%), Gaps = 0/996 (0%) Strand=Plus/Plus Query 410 TATGGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGTTCGT 469 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647316 TAGGGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGTTCGT 16647375 Query 470 GGTCAAAAGCATTTGCTGAAGAATATCGGTAGAAGGAAAAAGCTGCAGCAGCCTGCCAAC 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647376 GGTCAAAAGCATTTGCTGAAGAATATCGGTAGAAGGAAAAAGCTGCAGCAGCCTGCCAAC 16647435 Query 530 TCTGATGGATCAGGGGAAAAAATTCAAAACTTAGGCCTGTGGAAGGAAATCGAGAACTTA 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647436 TCTGATGGATCAGGGGAAAAAATTCAAAACTTAGGCCTGTGGAAGGAAATCGAGAACTTA 16647495 Query 590 AAGACAGATAAAAATGCTCTTATGCAGGAGTTGGTCAAACTTAGGCAGCACCAAGAAACT 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647496 AAGACAGATAAAAATGCTCTTATGCAGGAGTTGGTCAAACTTAGGCAGCACCAAGAAACT 16647555 Query 650 TCAGATAATAAGTTGCTCCTCTTGAGAGATCGTCTTCACGGGATGGAAAAGAATCAGCAG 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647556 TCAGATAATAAGTTGCTCCTCTTGAGAGATCGTCTTCACGGGATGGAAAAGAATCAGCAG 16647615 Query 710 CAGATGCTGTCATTCCTGGTGATGGCAATGCAAAGCCCTGCGTTTTTAGTTCAAATGCTT 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647616 CAGATGCTGTCATTCCTGGTGATGGCAATGCAAAGCCCTGCGTTTTTAGTTCAAATGCTT 16647675 Query 770 CGGCGCATGGCAGAAACAGCCAGTATGCTAGATGTAGGTACAGAGGATGTTAGATCAGTT 829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647676 CGGCGCATGGCAGAAACAGCCAGTATGCTAGATGTAGGTACAGAGGATGTTAGATCAGTT 16647735 Query 830 GCTTCTGATGGGATGATAGTACGGTACCAGCCACCAGTGGATGAAACACCCAAGTCTGTG 889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647736 GCTTCTGATGGGATGATAGTACGGTACCAGCCACCAGTGGATGAAACACCCAAGTCTGTG 16647795 Query 890 CAGACACGAAACTTTATTTCAGAAAATCAAGAAGTTGATCCTTCTCCTGATGGGTTGAAA 949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647796 CAGACACGAAACTTTATTTCAGAAAATCAAGAAGTTGATCCTTCTCCTGATGGGTTGAAA 16647855 Query 950 GATTTTCTCCTGAATGCTGATTTTTTGAAAATGCTTACAGATGAAAAATTGTGTTCCTTG 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647856 GATTTTCTCCTGAATGCTGATTTTTTGAAAATGCTTACAGATGAAAAATTGTGTTCCTTG 16647915 Query 1010 GATAATCATGCTCCATTTATCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTT 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647916 GATAATCATGCTCCATTTATCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTT 16647975 Query 1070 CTATTAGCCAGCCCTTTCTTAGAAAATACCGAGGATGGAAAGCTGGATAGTGAGGAGCAC 1129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16647976 CTATTAGCCAGCCCTTTCTTAGAAAATACCGAGGATGGAAAGCTGGATAGTGAGGAGCAC 16648035 Query 1130 AATGATTATGAGCTGGAGATGGAAACATCAGTGTCTGGAGGCCAGCTTGAAACATCCCGA 1189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16648036 AATGATTATGAGCTGGAGATGGAAACATCAGTGTCTGGAGGCCAGCTTGAAACATCCCGA 16648095 Query 1190 GAATTTGAACTTCTGATTGAACAAATGGAGAAATCACAGACCTTGGGAATGGAATAATCA 1249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16648096 GAATTTGAACTTCTGATTGAACAAATGGAGAAATCACAGACCTTGGGAATGGAATAATCA 16648155 Query 1250 GTTTATTaaaaaaaCTCATTTGGAGCAATGGCAAAACTTGGATTGCAATTGAGCAAATAG 1309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16648156 GTTTATTAAAAAAACTCATTTGGAGCAATGGCAAAACTTGGATTGCAATTGAGCAAATAG 16648215 Query 1310 GACTTCTTGTCTTCTGAAGTCTGAACCTTGCTTTTAATTCGGAATATAATAGAACATGAG 1369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16648216 GACTTCTTGTCTTCTGAAGTCTGAACCTTGCTTTTAATTCGGAATATAATAGAACATGAG 16648275 Query 1370 TACGACACAATTTTGATGTCTTCGTGTGTTTTCTGA 1405 |||||||||||||||||||||||||||||||||||| Sbjct 16648276 TACGACACAATTTTGATGTCTTCGTGTGTTTTCTGA 16648311 Score = 746 bits (826), Expect = 0.0 Identities = 413/413 (100%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 1 TAGGAACCGCAAACCACCAACCGCAGAGAGACAGCCACGCCACACTTTCTTCTTGGCTTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16644692 TAGGAACCGCAAACCACCAACCGCAGAGAGACAGCCACGCCACACTTTCTTCTTGGCTTT 16644751 Query 61 CAAATAGTCCGATCAAATTGTACGATTCCAAACCCGTCCTCACACTCCAAATTAATAAGG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16644752 CAAATAGTCCGATCAAATTGTACGATTCCAAACCCGTCCTCACACTCCAAATTAATAAGG 16644811 Query 121 ACGCTGCAGAAACTCCCTTTGATCCGAACAACTCCTGAGAACTCCGATTTTCGCTTTACG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16644812 ACGCTGCAGAAACTCCCTTTGATCCGAACAACTCCTGAGAACTCCGATTTTCGCTTTACG 16644871 Query 181 TGGTAACGTGATGGTGAAGAAATCGGCCGAGGATGCTTCTGCTTCAGTGCCACCGTTTCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16644872 TGGTAACGTGATGGTGAAGAAATCGGCCGAGGATGCTTCTGCTTCAGTGCCACCGTTTCT 16644931 Query 241 GAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATCATATCGTGGAGTCA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16644932 GAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATCATATCGTGGAGTCA 16644991 Query 301 GACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCCGGTTGCTTCCTAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16644992 GACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCCGGTTGCTTCCTAA 16645051 Query 361 ATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTATG 413 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16645052 ATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTATG 16645104 Score = 69.8 bits (76), Expect = 7e-10 Identities = 123/179 (69%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 225 CAGTGCCACCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCA 284 || |||| |||||||||||||| ||||| |||||||||||| || || ||||| Sbjct 32826335 CATTGCCTCCGTTTCTGAAGAAGCTCTACGCCATGGTGGACGACCCGGAGACCGACTCGG 32826394 Query 285 TCATATCGTGGAGTCA----GACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTC 340 | | || ||||| | |||| || ||||||| | ||| || | ||||||| Sbjct 32826395 TTGTGTCTTGGAGCAACGGCGACA----ACAGCTTTGTGGTTTGGAACCCGCACGAGTTC 32826450 Query 341 TCGGTCCGGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCA 399 | | | | || || || |||||||||||| || ||| | |||||||| |||| Sbjct 32826451 GCCTCCAAGCTTCTGCCCAAGCACTTCAAGCACAATAACTTCGCTAGCTTCATCCGGCA 32826509 Score = 60.8 bits (66), Expect = 4e-07 Identities = 111/163 (68%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 596 GATAAAAATGCTCTTATGCAGGAGTTGGTCAAACTTAGGCAGCACCAAGAAACTTCAGAT 655 || || ||||||||||||||||| | || | | ||||||||||| || | | ||| Sbjct 32840997 GACAAGAATGCTCTTATGCAGGAACTTGTTAGGTTGAGGCAGCACCAGCAAGCAACTGAT 32841056 Query 656 AATAAGTTGCTCCTCTTGAGAGATCGTCTTCACGGGATGGAAAAGAATCAGCAGCAGATG 715 | ||||||| || || | ||| | || ||||| ||| ||||| || ||| Sbjct 32841057 CACCAGTTGCTGAGTGTGGGACAACGTGTGCAGCTAATGGAGCAGAGACAGCAACAAATG 32841116 Query 716 CTGTCATTCCTGGTGATGGCAATGCAAAGCCCTGCGTTTTTAG 758 |||| ||||| | | ||| ||||| || || | || |||| Sbjct 32841117 ATGTCTTTCCTTGCAAAGGCTATGCATAGTCCCGGCTTATTAG 32841159 Score = 37.4 bits (40), Expect = 4.2 Identities = 50/67 (75%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 443 GAATTTGCAAATGATGGA-TTTGTTCGTGGTCAAAAGCATTTGCTGAAGAATATCGGTAG 501 ||||||||||||| || | ||| | | ||||||| || | |||| | |||| |||| Sbjct 32840820 GAATTTGCAAATG-TGAAGTTTCTAAGAGGTCAAACACACCTTTTGAAAAGTATCAGTAG 32840878 Query 502 AAGGAAA 508 |||||| Sbjct 32840879 GAGGAAA 32840885 Score = 37.4 bits (40), Expect = 4.2 Identities = 22/23 (96%), Gaps = 0/23 (0%) Strand=Plus/Plus Query 38 CGCCACACTTTCTTCTTGGCTTT 60 ||||||||||| ||||||||||| Sbjct 33430458 CGCCACACTTTATTCTTGGCTTT 33430480 >Query1 on lcl|Jr3S| Query1 on lcl|Jr3S Length=28458890 Score = 120 bits (132), Expect = 4e-25 Identities = 150/204 (74%), Gaps = 19/204 (9%) Strand=Plus/Plus Query 456 ATGGATTTGTTCGTGGTCAAAAGCATTTGCTGAAGA-------ATATCGGTAGAAGGAAA 508 |||||||||| || ||||||||||||||| | |||| || || ||||| ||| Sbjct 9304635 ATGGATTTGTCCGAGGTCAAAAGCATTTGTTAAAGATATATCAATGTCCGTAGAGTAAAA 9304694 Query 509 A--AGCTGCAGCAGCCTGCCAACTCTGATGGATCAGGGGA-AAAAATTCAAAACTTAGGC 565 | || |||||| ||| ||||| ||||| | |||||| ||||||| |||||| | Sbjct 9304695 ACAAGTTGCAGCCACCTTACAACTGTGATGCACCAGGGGGCAAAAATTGGAAACTTGGCA 9304754 Query 566 CTGTGGAAG---GAAATCGAGAACTTAAAGACAGATAAAAATGCTCTTATGCAGGAGTTG 622 | || ||| ||||||||||| || ||| |||||||||||| | |||||| Sbjct 9304755 TTATGAAAGCTGGAAATCGAGAATATATC------TAAGAATGCTCTTATGAAAGAGTTG 9304808 Query 623 GTCAAACTTAGGCAGCACCAAGAA 646 ||||||||| ||||| |||||||| Sbjct 9304809 GTCAAACTTGGGCAGTACCAAGAA 9304832 Score = 89.7 bits (98), Expect = 8e-16 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 672 TGAGAGATCGTCTTCACGGGATGGAAAAGAATCAGCAGCAGATGCTGTCATTCCTGGTGA 731 ||| ||| ||||||| || || |||||||||||||||| |||| ||| ||||| | | Sbjct 9304958 TGAAAGACAGTCTTCAAGGTATAGAAAAGAATCAGCAGCCAATGCGGTCCTTCCTAGCAA 9305017 Query 732 TGGCAATGCAAAGCCCTGCGTTTTTAGTTCAAATGCTTCGGC 773 |||| ||||||| ||||| |||| ||||||| | |||| || Sbjct 9305018 TGGCCATGCAAAACCCTGGGTTTGTAGTTCAGCTACTTCAGC 9305059 Score = 69.8 bits (76), Expect = 7e-10 Identities = 125/183 (68%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 225 CAGTGCCACCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCA 284 || |||| |||||||||| ||| |||| |||||||||||| || || ||||| Sbjct 4718683 CATTGCCGCCGTTTCTGAGGAAGCTTTACGCCATGGTGGACGACCCGGAGACCGACTCGG 4718624 Query 285 TCATATCGTGGAGTCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGG 344 | | || ||||| | || || ||||||| ||||| || | |||||| | | Sbjct 4718623 TGGTTTCCTGGAGCGACGGAAACAACAGCTTTGTGGTCTGGAACCCGCATGAGTTCGCCG 4718564 Query 345 TCCGGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCA 404 | | | || || || |||||||||||| || || |||||||||| |||| | | Sbjct 4718563 CCAAGCTTCTGCCCAAGCACTTCAAGCACAAGAACTTGGCCAGCTTCATCCGGCAGTTGA 4718504 Query 405 ACA 407 ||| Sbjct 4718503 ACA 4718501 Score = 62.6 bits (68), Expect = 1e-07 Identities = 106/154 (69%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 596 GATAAAAATGCTCTTATGCAGGAGTTGGTCAAACTTAGGCAGCACCAAGAAACTTCAGAT 655 || || |||| |||||||||||| | || ||| | ||||||||||| || | | ||| Sbjct 4713808 GACAAGAATGTTCTTATGCAGGAACTTGTTAAATTGAGGCAGCACCAGCAAGCAACTGAT 4713749 Query 656 AATAAGTTGCTCCTCTTGAGAGATCGTCTTCACGGGATGGAAAAGAATCAGCAGCAGATG 715 || |||||| || | | ||| | || | |||| ||| ||||| || ||| Sbjct 4713748 CATCAGTTGCAGAATGTGGGGCAGCGTGTGCAGGTACTGGAGCAGAGACAGCAACAAATG 4713689 Query 716 CTGTCATTCCTGGTGATGGCAATGCAAAGCCCTG 749 |||| ||||| | | ||| ||||| || |||| Sbjct 4713688 ATGTCTTTCCTAGCAAAGGCTATGCAGAGTCCTG 4713655 Score = 60.8 bits (66), Expect = 4e-07 Identities = 123/183 (67%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 225 CAGTGCCACCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCA 284 || |||| |||||||||| ||| |||| |||||||| ||| || || ||||| Sbjct 26434440 CATTGCCGCCGTTTCTGAGGAAGCTTTACGCCATGGTGGAAGACCCGGAGACCGACTCGG 26434381 Query 285 TCATATCGTGGAGTCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGG 344 | | || ||||| | | || ||||||| ||||| | | ||||||| | | Sbjct 26434380 TGGTTTCTTGGAGCGATTGCAACAACAGCTTTGTGGTCTGGAATCCGCACGAGTTCGCCG 26434321 Query 345 TCCGGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCA 404 | | | || || || |||||||||||| || || |||||||||| |||| | | Sbjct 26434320 CCAAGCTTCTGCCCAAGCACTTCAAGCACAAGAACTTGGCCAGCTTCATCCGGCAGTTGA 26434261 Query 405 ACA 407 ||| Sbjct 26434260 ACA 26434258 Score = 59.0 bits (64), Expect = 1e-06 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1010 GATAATCATGCTCCATTTATCCTACCAGATTT 1041 |||||||||||||||||||||||||||||||| Sbjct 9305251 GATAATCATGCTCCATTTATCCTACCAGATTT 9305282 Score = 50.0 bits (54), Expect = 7e-04 Identities = 32/35 (91%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1079 AGCCCTTTCTTAGAAAATACCGAGGATGGAAAGCT 1113 ||||||||||||||| ||| | ||||||||||||| Sbjct 9305292 AGCCCTTTCTTAGAAGATAACAAGGATGGAAAGCT 9305326 Score = 37.4 bits (40), Expect = 4.2 Identities = 30/34 (88%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 647 ACTTCAGATAATAAGTTGCTCCTCTTGAGAGATC 680 |||||| ||| |||| ||||||||||||||||| Sbjct 5926930 ACTTCA-ATAG-AAGTGGCTCCTCTTGAGAGATC 5926899 >Query1 on lcl|Jr1S| Query1 on lcl|Jr1S Length=29818788 Score = 93.3 bits (102), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 233 CCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATCATATCG 292 |||||||||| || ||||| ||||||||||| ||| || ||| ||| ||||| Sbjct 15567753 CCGTTTCTGATAAAGACGTACGACATGGTGGACGATTCGGCGACGGACGAGATCGTATCG 15567694 Query 293 TGGAG-TCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCCGGTT 351 ||||| || ||||| || |||| || ||||| || |||||||| | || | Sbjct 15567693 TGGAGCTCCCACAAGA-ACAGCTTCGTGGTCTGGAACCCC-CCGAGTTCGCCCGCCTCCT 15567636 Query 352 GCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTA 411 || || | ||||||||||||| ||| |||||||||||||| | || ||||| | ||| Sbjct 15567635 CCTCCCCACCTACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTA 15567576 Query 412 TG 413 || Sbjct 15567575 TG 15567574 Score = 44.6 bits (48), Expect = 0.028 Identities = 48/64 (75%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 350 TTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATC 409 ||||| ||| | | ||||| |||| ||| |||||||||||| | | || || |||| Sbjct 1188329 TTGCTGCCTTACTGTTTCAAACACAACAACTTCTCCAGCTTCGTCCGCCAGCTTAACACA 1188388 Query 410 TATG 413 |||| Sbjct 1188389 TATG 1188392 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 905 ATTTCAGAAAATCAAGAAGTTGATCCTTCTCCT 937 ||||||| || | ||||||||||||| ||| || Sbjct 9942184 ATTTCAGCAATTGAAGAAGTTGATCCATCTGCT 9942152 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/32 (88%), Gaps = 2/32 (6%) Strand=Plus/Minus Query 943 GTTGAAAGATTTTCTCCTGAATGCTGATTTTT 974 ||| |||||||||| || ||||||||||||| Sbjct 11264948 GTTAAAAGATTTTC--CTAAATGCTGATTTTT 11264919 >Query1 on lcl|Jr6S| Query1 on lcl|Jr6S Length=24894769 Score = 89.7 bits (98), Expect = 8e-16 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 251 TACGAGATGGTGGACGACGAGGCCACAGACTCCATCATATCGTGGAGTCAGACAAGTGAC 310 ||||| ||||| || ||| ||| || ||| | || | |||||||| | || | || Sbjct 18247398 TACGATATGGTCGATGACCCGGCAACCGACCCAATAGTGTCGTGGAGCCCCACGAACAAC 18247457 Query 311 GGCTTTGTCATCTGGGACATGACCGAGTTCTC---GGTCCGGTTGCTTCCTAAATACTTC 367 |||| || | ||| || | |||||||| | || || | || || || |||||| Sbjct 18247458 AGCTTCGTGGTGTGGAACCCGCCCGAGTTCGCCAGGGACC---TCCTGCCCAAGTACTTC 18247514 Query 368 AAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTA 411 ||||||| |||||||||||||||| | ||||| ||||||| ||| Sbjct 18247515 AAGCACAACAATTTCTCCAGCTTCGTCAGGCAGCTCAACACCTA 18247558 Score = 78.8 bits (86), Expect = 1e-12 Identities = 120/171 (70%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 579 TCGAGAACTTAAAGACAGATAAAAATGCTCTTATGCAGGAGTTGGTCAAACTTAGGCAGC 638 |||||| | |||| || || |||| ||||||||||| | ||||| | ||||||| Sbjct 18259276 TCGAGAGGCTTAAGAGGGACAAGAATGTGCTTATGCAGGAACTTGTCAAGTTGAGGCAGC 18259335 Query 639 ACCAAGAAACTTCAGATAATAAGTTGCTCCTCTTGAGAGATCGTCTTCACGGGATGGAAA 698 | ||| | || | |||| | || ||| | || | |||||||| |||||||| Sbjct 18259336 AACAACAGGCTACTGATAGTCAGCTGCAAACCATGGTGCAGCGTCTTCAGGGGATGGAGC 18259395 Query 699 AGAATCAGCAGCAGATGCTGTCATTCCTGGTGATGGCAATGCAAAGCCCTG 749 ||| ||||| ||| || ||||||| |||| | || ||||| || |||| Sbjct 18259396 AGAGGCAGCAACAGGTGATGTCATTTCTGGCAAAAGCTATGCAGAGTCCTG 18259446 Score = 75.2 bits (82), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 229 GCCACCGTTTCTGAAGAAATGC-TACGAGATGGTGGACGACGAGGCCACAGACTCCATCA 287 ||| ||||| || ||| || | ||||| ||||| || ||| ||||| ||| || Sbjct 18256563 GCCGCCGTTCCT-AAGTAAGACGTACGACATGGTCGATGACTCCGCCACCGACCGAATAG 18256621 Query 288 TATCGTGGAGTCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTC---GG 344 | || ||||| | || | || |||| || | ||| || | |||||||| | || Sbjct 18256622 TGTCATGGAGCCCCACGAACAACAGCTTCGTGGTGTGGAACCCGCCCGAGTTCGCCAGGG 18256681 Query 345 TCCGGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCA 404 || | || || || ||||||||||||| ||| ||||||||||| | ||||| |||| Sbjct 18256682 ACC---TCCTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTTGTCAGGCAGCTCA 18256738 Query 405 ACATCTA 411 ||| ||| Sbjct 18256739 ACACCTA 18256745 Score = 69.8 bits (76), Expect = 7e-10 Identities = 131/193 (68%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 557 AACTTAGGCCTGTGGAAGGAAATCGAGAACTTAAAGACAGATAAAAATGCTCTTATGCAG 616 || || |||||| | | || | |||| | |||| || || |||| ||||||||| Sbjct 18251608 AAGTTTGGCCTGGAGGAAGAGGTTGAGAGGCTTAAGAGGGACAAGAATGTGCTTATGCAG 18251667 Query 617 GAGTTGGTCAAACTTAGGCAGCACCAAGAAACTTCAGATAATAAGTTGCTCCTCTTGAGA 676 || | |||| | |||||||| ||| | | | |||| | || ||| | || Sbjct 18251668 GAACTTGTCAGGTTGAGGCAGCAGCAACAGGCAACTGATAGTCAGCTGCAAACCATGGTG 18251727 Query 677 GATCGTCTTCACGGGATGGAAAAGAATCAGCAGCAGATGCTGTCATTCCTGGTGATGGCA 736 | |||||||| |||||||| ||| || || ||| || |||||||||||| | ||| Sbjct 18251728 CAGCGTCTTCAGGGGATGGAGCAGAGGCATCAACAGGTGATGTCATTCCTGGCAAAGGCT 18251787 Query 737 ATGCAAAGCCCTG 749 |||| || |||| Sbjct 18251788 GTGCAGAGTCCTG 18251800 Score = 55.4 bits (60), Expect = 2e-05 Identities = 59/78 (76%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 413 GGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGTTCGTGGT 472 ||||| || || ||||| || |||||||||||||||||||| || ||| | | || Sbjct 18259077 GGTTTCAGGAAGGTTGATCCAGACCGCTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGC 18259136 Query 473 CAAAAGCATTTGCTGAAG 490 ||||| || |||| ||| Sbjct 18259137 CAAAAACACCTGCTTAAG 18259154 Score = 51.8 bits (56), Expect = 2e-04 Identities = 61/83 (73%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 413 GGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGTTCGTGGT 472 ||||| || || ||||| || || ||||||||||||||||| || || | | || Sbjct 18251431 GGTTTCAGGAAGGTTGATCCAGACCGATGGGAATTTGCAAATGAGGGCTTCTTGAGGGGC 18251490 Query 473 CAAAAGCATTTGCTGAAGAATAT 495 ||||| || |||| |||| ||| Sbjct 18251491 CAAAAACACCTGCTTAAGAGTAT 18251513 >Query1 on lcl|Jr1D| Query1 on lcl|Jr1D Length=51893103 Score = 78.8 bits (86), Expect = 1e-12 Identities = 127/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 233 CCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATCATATCG 292 |||||||||| || ||||| |||||||||||| | | || ||| ||| | ||| Sbjct 21821452 CCGTTTCTGATAAAGACGTACGACATGGTGGACGACTCGACGACCGACGAGATCGTGTCG 21821393 Query 293 TGGAG-TCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCCGGTT 351 ||||| || |||||| | |||| || ||||| || | | |||||||| || | Sbjct 21821392 TGGAGCTCCGACAAGAC-CAGCTTCGTGGTCTGGAACCCGCCTGAGTTCTCCCGCCTCCT 21821334 Query 352 GCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTA 411 || || | | |||||||||| ||| |||||||||||||| | || || || | ||| Sbjct 21821333 CCTCCCCACCTTTTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTTAATACCTA 21821274 Score = 64.4 bits (70), Expect = 3e-08 Identities = 49/58 (84%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 350 TTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACA 407 ||||| |||||||| |||||||||| |||||||||||||||| | | || || |||| Sbjct 1850433 TTGCTGCCTAAATATTTCAAGCACAACAATTTCTCCAGCTTCGTCCGCCAGCTTAACA 1850490 Score = 57.2 bits (62), Expect = 4e-06 Identities = 49/61 (80%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 353 CTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTAT 412 || || | |||||||||||||| ||||||||| ||||| | ||||| ||||| | ||| Sbjct 40962779 CTCCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAGCTCAATACTTAT 40962720 Query 413 G 413 | Sbjct 40962719 G 40962719 Score = 37.4 bits (40), Expect = 4.2 Identities = 31/37 (84%), Gaps = 2/37 (5%) Strand=Plus/Minus Query 567 TGTGGAAGGAAATCGAGAACTTAAAGACAGATAAAAA 603 ||||||| ||| | | |||||||||||||| ||||| Sbjct 7802062 TGTGGAAAGAA--CCATAACTTAAAGACAGACAAAAA 7802028 >Query1 on lcl|Jr8D| Query1 on lcl|Jr8D Length=35197335 Score = 77.0 bits (84), Expect = 5e-12 Identities = 130/186 (70%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 229 GCCACCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATCAT 288 ||| |||||||||| || || || |||||||| ||| | || ||||| || | Sbjct 4253747 GCCTCCGTTTCTGACCAAGACCTTTGAAATGGTGGAGGACCCTTCGACGGACTCGATTGT 4253688 Query 289 ATCGTGGAGTCAGACAA-GTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCC 347 ||||||||| |||| | || |||| ||| | |||||| | ||||||| | Sbjct 4253687 ATCGTGGAG-CAGAGGTCGCAACAGCTTCGTCGTTTGGGACTCCGGCAAGTTCTCCACCA 4253629 Query 348 GGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACA 407 | |||||| ||||| |||||||| || |||||||||||||| | |||||||| | Sbjct 4253628 CCCTTCTTCCTCGGTACTTTAAGCACAGTAACTTCTCCAGCTTCATTCGCCAACTCAATA 4253569 Query 408 TCTATG 413 |||| Sbjct 4253568 CATATG 4253563 Score = 51.8 bits (56), Expect = 2e-04 Identities = 48/61 (79%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 353 CTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTAT 412 || || || ||||||||||||| ||| |||||||| ||| | | || ||||| | |||| Sbjct 7905466 CTCCCCAACTACTTCAAGCACAACAACTTCTCCAGTTTCGTCCGACAGCTCAATACCTAT 7905525 Query 413 G 413 | Sbjct 7905526 G 7905526 Score = 41.0 bits (44), Expect = 0.34 Identities = 27/30 (90%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 897 GAAACTTTATTTCAGAAAATCAAGAAGTTG 926 ||| || || |||||||||||||||||||| Sbjct 57170 GAACCTCTAATTCAGAAAATCAAGAAGTTG 57199 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 156 TGAGAACTCCGATTTTCGCTTTACG 180 ||||||||||||||| ||| ||||| Sbjct 15821700 TGAGAACTCCGATTTGCGCGTTACG 15821676 Score = 37.4 bits (40), Expect = 4.2 Identities = 34/42 (81%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 963 ATGCTGATTTTTTGAAAA--TGCTTACAGATGAAAAATTGTG 1002 ||| |||||||||||| | |||||||||| || | ||||| Sbjct 16527582 ATGTTGATTTTTTGAACATTTGCTTACAGAACAAGAGTTGTG 16527623 >Query1 on lcl|Jr2D| Query1 on lcl|Jr2D Length=43955564 Score = 75.2 bits (82), Expect = 2e-11 Identities = 128/184 (70%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 230 CCACCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATCATA 289 || |||||||||||||| | |||||||||||| ||| || || || | | | Sbjct 35069595 CCGCCGTTTCTGAAGAAGATATTCGAGATGGTGGAAGACCCGGATACCGATACGGTGGTG 35069536 Query 290 TCGTGGAGTCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCCGG 349 |||||||| |||| | ||| |||| | | |||||| || | || ||| | | Sbjct 35069535 TCGTGGAGCGAGACCCGGGACAGCTTCACCGTGTGGGAC--GAGCATGTCTTCGCACAAG 35069478 Query 350 T--TGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACA 407 |||| || | || ||||||||||| || |||||||||||||| | || ||||||| Sbjct 35069477 ACCTGCTCCCAAGGTATTTCAAGCACAGAAACTTCTCCAGCTTCATTCGCCAGCTCAACA 35069418 Query 408 TCTA 411 ||| Sbjct 35069417 CCTA 35069414 Score = 71.6 bits (78), Expect = 2e-10 Identities = 54/64 (84%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 350 TTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATC 409 ||||| |||||||| |||||||||| |||||||||||| ||| | | || ||||||| | Sbjct 8996265 TTGCTCCCTAAATATTTCAAGCACAACAATTTCTCCAGTTTCGTCCGCCAGCTCAACACC 8996206 Query 410 TATG 413 |||| Sbjct 8996205 TATG 8996202 Score = 71.6 bits (78), Expect = 2e-10 Identities = 125/180 (69%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 230 CCACCGTTTCTGAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATCATA 289 || |||||||||||||| | |||||||||||| ||| || || ||| | | Sbjct 35109900 CCGCCGTTTCTGAAGAAGATATTCGAGATGGTGGAAGACCCGGATACCGACAGGGTGGTG 35109841 Query 290 TCGTGGAGTCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCCGG 349 |||||||| |||| | ||| |||| | | |||||| || | || ||| | | Sbjct 35109840 TCGTGGAGCGAGACCCGGGACAGCTTCACCGTGTGGGAC--GAGCATGTCTTCGCACAAG 35109783 Query 350 T--TGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACA 407 |||| || | || ||||||||||| || |||||||||||||| | || ||||||| Sbjct 35109782 ACCTGCTCCCAAGGTATTTCAAGCACAGAAACTTCTCCAGCTTCATTCGCCAGCTCAACA 35109723 Score = 50.0 bits (54), Expect = 7e-04 Identities = 66/92 (72%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 413 GGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGTTCGTGGT 472 ||||| | || ||||||| ||| |||| | |||||||| || |||||| | || Sbjct 35069100 GGTTTCAAGAAGATTGATACAGATAACTGGAAGTTTGCAAACGAAGGATTTCAAGGAGGG 35069041 Query 473 CAAAAGCATTTGCTGAAGAATATCGGTAGAAG 504 | ||||||||||| |||| ||| ||||| Sbjct 35069040 AAGAAGCATTTGCTCAAGAGCATCAAAAGAAG 35069009 Score = 50.0 bits (54), Expect = 7e-04 Identities = 66/92 (72%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 413 GGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGTTCGTGGT 472 ||||| | || ||||||| ||| |||| | |||||||| || |||||| | || Sbjct 35109401 GGTTTCAAGAAGATTGATACAGATAACTGGAAGTTTGCAAACGAAGGATTTCAAAGAGGG 35109342 Query 473 CAAAAGCATTTGCTGAAGAATATCGGTAGAAG 504 | ||||||||||| |||| ||| ||||| Sbjct 35109341 AAGAAGCATTTGCTCAAGAGCATCAAAAGAAG 35109310 Score = 42.8 bits (46), Expect = 0.098 Identities = 36/44 (82%), Gaps = 3/44 (7%) Strand=Plus/Plus Query 350 TTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCAT 393 ||||| ||||| || |||||| ||| ||||||||| |||||| Sbjct 34316570 TTGCTGCCTAACTATTTCAAGTACA---ATTTCTCCAACTTCAT 34316610 >Query1 on lcl|Jr5D| Query1 on lcl|Jr5D Length=33932481 Score = 71.6 bits (78), Expect = 2e-10 Identities = 63/79 (80%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 335 GAGTTCTCGGTCCGGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATG 394 |||||||||| | ||| | ||||||||||||||||||| ||| ||||| |||||||| Sbjct 5285887 GAGTTCTCGGAGCTCTTGTTGCCTAAATACTTCAAGCACAACAACTTCTCTAGCTTCATT 5285828 Query 395 AGGCAACTCAACATCTATG 413 | || || || | ||||| Sbjct 5285827 CGCCAGCTGAATACCTATG 5285809 Score = 55.4 bits (60), Expect = 2e-05 Identities = 126/187 (67%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 228 TGCCACCGTTTCT-GAAGAAATGCTACGAGATGGTGGACGACGAGGCCACAGACTCCATC 286 |||| ||||| || | | ||| | |||||||||||||| || |||| || | | Sbjct 13577590 TGCCTCCGTTCCTTGCAAAAACG-TACGAGATGGTGGATGATCCCTCCACTGATTTAGTG 13577648 Query 287 ATATCGTGGAGTCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTC 346 | |||||||| |||| | | | |||||||| | ||| | | | || || || Sbjct 13577649 GTGTCGTGGAGCCAGAGTAATAAGAGCTTTGTCGTGTGGAATCCGCCTGATTTTGCGAGG 13577708 Query 347 CGGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAAC 406 |||| || | | ||| ||||||| ||| |||||||||||||| || || || || Sbjct 13577709 GATCTGCTGCCGAGGTTCTTTAAGCACAACAACTTCTCCAGCTTCATTAGACAGCTGAAT 13577768 Query 407 ATCTATG 413 | |||| Sbjct 13577769 ACATATG 13577775 Score = 42.8 bits (46), Expect = 0.098 Identities = 41/53 (77%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 413 GGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGT 465 |||||||| || ||||| ||| | ||||||||||| ||||| | ||||| Sbjct 13577891 GGTTTTAGGAAGGTTGATCCGGACCAATGGGAATTTGCGAATGACGATTTTGT 13577943 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 156 TGAGAACTCCGATTTTCGCTTTACG 180 ||||||||||||||| ||| ||||| Sbjct 20572756 TGAGAACTCCGATTTGCGCATTACG 20572732 >Query1 on lcl|Jr6D| Query1 on lcl|Jr6D Length=37991167 Score = 60.8 bits (66), Expect = 4e-07 Identities = 48/58 (83%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 350 TTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACA 407 ||||| || || ||||| ||||||| ||| |||||||||||| | | |||||||||| Sbjct 31617199 TTGCTACCCAAGTACTTTAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACA 31617256 Score = 37.4 bits (40), Expect = 4.2 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 546 AAAAAATTCAAAACTTAGGCCTGTGGAAGGAAATC 580 || ||||| ||||||| ||| |||||||||||| Sbjct 3081947 AAGAAATTAAAAACTTCAGCCAATGGAAGGAAATC 3081981 >Query1 on lcl|Jr2S| Query1 on lcl|Jr2S Length=37319718 Score = 59.0 bits (64), Expect = 1e-06 Identities = 44/52 (85%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 362 TACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTATG 413 || |||||||||||||| |||||||||||| | | || ||||||| ||||| Sbjct 32064197 TATTTCAAGCACAGCAACTTCTCCAGCTTCGTTCGTCAGCTCAACACCTATG 32064146 Score = 37.4 bits (40), Expect = 4.2 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 156 TGAGAACTCCGATTTTCGCTTTACG 180 ||||||||||||||| ||| ||||| Sbjct 35150297 TGAGAACTCCGATTTGCGCATTACG 35150273 >Query1 on lcl|Jr8S| Query1 on lcl|Jr8S Length=19617005 Score = 57.2 bits (62), Expect = 4e-06 Identities = 49/61 (80%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 353 CTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTAT 412 || || || ||||||||||||| ||| ||||| |||||| | | || ||||||| |||| Sbjct 4741577 CTCCCCAACTACTTCAAGCACAACAACTTCTCAAGCTTCGTTCGACAGCTCAACACCTAT 4741636 Query 413 G 413 | Sbjct 4741637 G 4741637 Score = 39.2 bits (42), Expect = 1.2 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 539 TCAGGGGAAAAAATTCAAAAC 559 ||||||||||||||||||||| Sbjct 17423788 TCAGGGGAAAAAATTCAAAAC 17423768 >Query1 on lcl|Jr7S| Query1 on lcl|Jr7S Length=22705590 Score = 57.2 bits (62), Expect = 4e-06 Identities = 49/61 (80%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 353 CTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTAT 412 || ||||| ||||||||||||| |||||||||||| || | | ||||| || | |||| Sbjct 19593930 CTCCCTAACTACTTCAAGCACAACAATTTCTCCAGTTTTGTTCGCCAACTTAATACCTAT 19593871 Query 413 G 413 | Sbjct 19593870 G 19593870 >Query1 on lcl|Jr4D| Query1 on lcl|Jr4D Length=35878018 Score = 57.2 bits (62), Expect = 4e-06 Identities = 49/61 (80%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 353 CTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTAT 412 || || | |||||||||||||| ||||||||| ||||| | ||||| ||||| | ||| Sbjct 19675950 CTACCAAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAGCTCAATACTTAT 19675891 Query 413 G 413 | Sbjct 19675890 G 19675890 Score = 39.2 bits (42), Expect = 1.2 Identities = 30/35 (86%), Gaps = 2/35 (6%) Strand=Plus/Plus Query 1007 TTGGATAATCATGCTCCATTTATCCTACCAGATTT 1041 ||||||| ||| |||||||||||| |||||||| Sbjct 9143470 TTGGATAG--ATGATCCATTTATCCTTCCAGATTT 9143502 Score = 37.4 bits (40), Expect = 4.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 708 AGCAGATGCTGTCATTCCTGGTGATGGCAA 737 ||||| |||||||||||||| ||||| || Sbjct 24243378 AGCAGTTGCTGTCATTCCTGTCGATGGAAA 24243349 >Query1 on lcl|Jr5S| Query1 on lcl|Jr5S Length=32184663 Score = 55.4 bits (60), Expect = 2e-05 Identities = 51/65 (78%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 410 TATGGTTTTAGAAAAATTGATATGGATCGCTGGGAATTTGCAAATGATGGATTTGTTCGT 469 || |||||||||||||||||| ||| | ||||||||||| ||||| | ||| | | Sbjct 13302131 TAGGGTTTTAGAAAAATTGATCCGGAACAATGGGAATTTGCGAATGAAGATTTTATGAGA 13302190 Query 470 GGTCA 474 ||||| Sbjct 13302191 GGTCA 13302195 Score = 50.0 bits (54), Expect = 7e-04 Identities = 111/165 (67%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 251 TACGAGATGGTGGACGACGAGGCCACAGACTCCATCATATCGTGGAGTCAGACAAGTGAC 310 |||||||||||||| || |||| || || | | |||||||| ||| | | | Sbjct 13301858 TACGAGATGGTGGATGATCCCTCCACTGATTCAGTTGTGTCGTGGAGCCAGTGTAATAAG 13301917 Query 311 GGCTTTGTCATCTGGGACATGACCGAGTTCTCGGTCCGGT--TGCTTCCTAAATACTTCA 368 |||||||| | ||| | | ||||| || ||| |||| || || | ||| | Sbjct 13301918 AGCTTTGTCGTGTGGAATCCTCCGGAGTTTGCG--AGGGTTCTGCTGCCGAAGTTCTTTA 13301975 Query 369 AGCACAGCAATTTCTCCAGCTTCATGAGGCAACTCAACATCTATG 413 |||||| || ||||| |||||||| || || || || | |||| Sbjct 13301976 AGCACAATAACTTCTCAAGCTTCATTAGACAGCTGAATACATATG 13302020 >Query1 on lcl|Jr7D| Query1 on lcl|Jr7D Length=29017359 Score = 44.6 bits (48), Expect = 0.028 Identities = 113/170 (66%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 225 CAGTGCCACCGTTTCTGAAGAAATGCT--ACGAGATGGTGGACGACGAGGCCACAGACTC 282 || ||||| ||||||||| ||| ||| ||| ||||| ||||| || || ||||| Sbjct 9792003 CATTGCCATCGTTTCTGAGGAA--GCTTGACGCCATGGTAGACGAGTCGGAGACCGACTC 9791946 Query 283 CATCATATCGTGGAGTCAGACAAGTGACGGCTTTGTCATCTGGGACATGACCGAGTTCTC 342 | | || ||||| | | | || |||||| ||||| || | |||||| | Sbjct 9791945 GGTGGTTTCTTGGAGCGACAGCAACAACAACTTTGTGGTCTGGAACCCGTATGAGTTCGC 9791886 Query 343 GGTCCGGTTGCTTCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCA 392 | | | | | ||||| |||||||||||| || || |||| |||| Sbjct 9791885 TGCCAAGCTTTTGCCTAAGCACTTCAAGCACAAGAACTTGGCCAGTTTCA 9791836 Score = 37.4 bits (40), Expect = 4.2 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 910 AGAAAATCAAGAAGTTGATC 929 |||||||||||||||||||| Sbjct 3398881 AGAAAATCAAGAAGTTGATC 3398900 >Query1 on lcl|Jr4S| Query1 on lcl|Jr4S Length=30027985 Score = 37.4 bits (40), Expect = 4.2 Identities = 26/30 (87%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 708 AGCAGATGCTGTCATTCCTGGTGATGGCAA 737 ||| | |||||||||||||| |||||| || Sbjct 9996777 AGCGGTTGCTGTCATTCCTGTTGATGGAAA 9996806 Score = 37.4 bits (40), Expect = 4.2 Identities = 28/33 (85%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 960 TGAATGCTGATTTTTTGAAAATGCTTACAGATG 992 ||||| || |||||||||||||| ||| || || Sbjct 24880049 TGAATTCTTATTTTTTGAAAATGTTTAAAGTTG 24880017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734636121084 Database: JrSerr_genome.fa Posted date: Apr 26, 2019 2:59 PM Number of letters in database: 534,671,929 Number of sequences in database: 73 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2