BLAST Results
BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: test_aa_db 214 sequences; 49,279 total letters Query= 8 Length=543 Score E Sequences producing significant alignments: (Bits) Value gi|6694198|gb|AAF25174.1|AF182346_1 (AF182346) NADH dehydrogena... 23.5 1.9 gi|6694190|gb|AAF25170.1|AF182342_1 (AF182342) NADH dehydrogena... 23.5 1.9 gi|6694194|gb|AAF25172.1|AF182344_1 (AF182344) NADH dehydrogena... 23.1 2.3 gi|6694214|gb|AAF25182.1|AF182354_1 (AF182354) NADH dehydrogena... 21.6 7.2 gi|6694200|gb|AAF25175.1|AF182347_1 (AF182347) NADH dehydrogena... 21.6 7.8 gi|6694210|gb|AAF25180.1|AF182352_1 (AF182352) NADH dehydrogena... 21.2 8.9 gi|6694202|gb|AAF25176.1|AF182348_1 (AF182348) NADH dehydrogena... 21.2 8.9 gi|6694208|gb|AAF25179.1|AF182351_1 (AF182351) NADH dehydrogena... 21.2 9.2 gi|6694192|gb|AAF25171.1|AF182343_1 (AF182343) NADH dehydrogena... 21.2 9.5 > 8 on gi|6694198|gb|AAF25174.1|AF182346_1 (AF182346) NADH dehydrogenase [Yushania exilis] Length=702 Score = 23.5 bits (49), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVGS 217 + + L +L++ TP S+ F + N + + F NAI S L+ LSIA F GS Sbjct 561 NGIAELTILSKWLTP---SINFFQESSNSSINSYEFITNAISSVSLAMFGLSIAYIFYGS 617 > 8 on gi|6694190|gb|AAF25170.1|AF182342_1 (AF182342) NADH dehydrogenase [Shibataea kumasaca] Length=705 Score = 23.5 bits (49), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVGS 217 + + L +L++ TP S+ F + N + + F NAI S L+ LSIA F GS Sbjct 561 NGIAELTILSKWLTP---SINFFQESSNSSINSYEFITNAISSVSLAMFGLSIAYIFYGS 617 > 8 on gi|6694194|gb|AAF25172.1|AF182344_1 (AF182344) NADH dehydrogenase [Sasa variegata] Length=702 Score = 23.1 bits (48), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVGS 217 + + L +L++ TP S+ F + N + + F NAI S L+ LSIA F GS Sbjct 561 NGITELTILSKWLTP---SINFFQESSNSSINSYEFITNAISSVSLAMFGLSIAYIFYGS 617 > 8 on gi|6694214|gb|AAF25182.1|AF182354_1 (AF182354) NADH dehydrogenase [Pariana radiciflora] Length=702 Score = 21.6 bits (44), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVGS 217 + + L VL++ TP S+ F + N + + F NAI S L+ L IA F GS Sbjct 561 NGIAELTVLSKWLTP---SINFFQESSNSSINSYEFLTNAISSVSLAMFGLFIAYIFYGS 617 > 8 on gi|6694200|gb|AAF25175.1|AF182347_1 (AF182347) NADH dehydrogenase [Alvimia gracilis] Length=701 Score = 21.6 bits (44), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 29/61 (48%), Gaps = 5/61 (8%) Query 159 TDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVG 216 + + L +L++ TP S+ F + N + + F NAI S L+ L IA F G Sbjct 560 NNGIAELTILSKWLTP---SINFFQESSNSSINFYEFITNAISSVSLAMFGLFIAYIFYG 616 Query 217 S 217 S Sbjct 617 S 617 > 8 on gi|6694210|gb|AAF25180.1|AF182352_1 (AF182352) NADH dehydrogenase [Nastus elatus] Length=702 Score = 21.2 bits (43), Expect = 8.9, Method: Compositional matrix adjust. Identities = 19/60 (32%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVGS 217 + + L +L++ TP S+ F + N + + F NAI S L+ L IA F GS Sbjct 561 NGIAELTILSKWLTP---SISFFQESSNSSINSYEFITNAISSVSLAMFGLFIAYIFYGS 617 > 8 on gi|6694202|gb|AAF25176.1|AF182348_1 (AF182348) NADH dehydrogenase [Melocanna baccifera] Length=702 Score = 21.2 bits (43), Expect = 8.9, Method: Compositional matrix adjust. Identities = 19/60 (32%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVGS 217 + + L +L++ TP S+ F + N + + F NAI S L+ L IA F GS Sbjct 561 NGIAELTILSKWLTP---SISFFQESSNSSINSYEFITNAISSVSLAMFGLFIAYIFYGS 617 > 8 on gi|6694208|gb|AAF25179.1|AF182351_1 (AF182351) NADH dehydrogenase [Hickelia madagascariensis] Length=704 Score = 21.2 bits (43), Expect = 9.2, Method: Compositional matrix adjust. Identities = 22/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query 151 AIGAIF---AATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSH 205 +IG +F + + L +L++ TP S+ F + N + + F NAI S L+ Sbjct 549 SIGILFDNGVMDNGIAELTILSKWLTP---SISFFQESSNSSMNSYEFITNAISSVSLAM 605 Query 206 ISLSIALKFVGS 217 L IA F GS Sbjct 606 FGLFIAYIFYGS 617 > 8 on gi|6694192|gb|AAF25171.1|AF182343_1 (AF182343) NADH dehydrogenase [Sucrea maculata] Length=704 Score = 21.2 bits (43), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/60 (32%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query 160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLF--NAIQSFDLSHISLSIALKFVGS 217 + + L +L++ TP S+ F + N + + F NAI S L+ L IA F GS Sbjct 563 NEIAELTILSKWLTP---SINFFQKSSNSSINSYEFFINAISSVSLAMFGLFIAYIFYGS 619 Lambda K H a alpha 0.326 0.138 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16906382 Database: test_aa_db Posted date: Jul 19, 2010 4:26 PM Number of letters in database: 49,279 Number of sequences in database: 214 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40